Wall clock time and date at job start Thu Apr 9 2020 11:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00389 * 2 1 4 4 C 1.50705 * 109.46961 * 288.38507 * 3 2 1 5 5 H 1.07997 * 120.00219 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99647 * 179.72366 * 4 3 2 7 7 N 1.31515 * 120.00103 * 0.27093 * 6 4 3 8 8 Si 1.86796 * 119.99833 * 180.27289 * 6 4 3 9 9 H 1.48500 * 109.47279 * 89.99570 * 8 6 4 10 10 H 1.48502 * 109.47465 * 209.99810 * 8 6 4 11 11 H 1.48497 * 109.47238 * 330.00029 * 8 6 4 12 12 C 1.46902 * 110.99734 * 123.95524 * 2 1 3 13 13 C 1.50704 * 110.01515 * 181.73390 * 12 2 1 14 14 O 1.20827 * 120.00041 * 143.86665 * 13 12 2 15 15 O 1.34226 * 119.99952 * 323.87043 * 13 12 2 16 16 C 1.54266 * 110.03344 * 60.34324 * 12 2 1 17 17 C 1.54956 * 104.15860 * 217.13604 * 16 12 2 18 18 C 1.54887 * 102.77930 * 37.88964 * 17 16 12 19 19 C 1.53870 * 110.03132 * 303.12415 * 12 2 1 20 20 H 1.09009 * 109.46876 * 64.66613 * 1 2 3 21 21 H 1.08995 * 109.47007 * 184.66693 * 1 2 3 22 22 H 1.09001 * 109.47333 * 304.67109 * 1 2 3 23 23 H 1.08993 * 109.47760 * 168.38209 * 3 2 1 24 24 H 1.09005 * 109.46783 * 48.38080 * 3 2 1 25 25 H 0.96992 * 119.99913 * 180.02562 * 7 6 4 26 26 H 0.96700 * 117.00159 * 179.97438 * 15 13 12 27 27 H 1.08992 * 110.48403 * 335.78461 * 16 12 2 28 28 H 1.09001 * 110.48258 * 98.42786 * 16 12 2 29 29 H 1.09004 * 110.72190 * 279.57252 * 17 16 12 30 30 H 1.08996 * 110.92222 * 156.29809 * 17 16 12 31 31 H 1.09007 * 110.48411 * 203.41024 * 18 17 16 32 32 H 1.08991 * 110.48962 * 80.76071 * 18 17 16 33 33 H 1.09005 * 110.03236 * 238.57175 * 19 12 2 34 34 H 1.09003 * 110.03550 * 0.02562 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7572 2.0010 -1.3484 5 1 1.2643 1.4384 -2.1275 6 6 2.1638 3.2969 -1.5856 7 7 2.7644 3.9818 -0.6370 8 14 1.8616 4.0799 -3.2544 9 1 0.5406 4.7582 -3.2510 10 1 2.9280 5.0745 -3.5350 11 1 1.8758 3.0294 -4.3039 12 6 1.9954 -0.7660 1.1376 13 6 3.5016 -0.7162 1.1403 14 8 4.1026 -0.6676 2.1874 15 8 4.1755 -0.7257 -0.0205 16 6 1.5152 -2.2298 1.0565 17 6 1.2541 -2.6254 2.5318 18 6 0.6512 -1.3310 3.1320 19 6 1.4467 -0.1947 2.4568 20 1 -0.3633 0.4398 -0.9289 21 1 -0.3633 -1.0242 0.0836 22 1 -0.3634 0.5846 0.8452 23 1 3.0654 1.3499 0.2069 24 1 1.4885 1.9552 0.7683 25 1 3.0501 4.8935 -0.8037 26 1 5.1405 -0.6920 0.0318 27 1 0.5959 -2.2980 0.4750 28 1 2.2901 -2.8619 0.6227 29 1 2.1869 -2.8852 3.0323 30 1 0.5420 -3.4481 2.5940 31 1 0.7957 -1.3081 4.2122 32 1 -0.4077 -1.2537 2.8860 33 1 2.2699 0.1178 3.0993 34 1 0.7895 0.6506 2.2529 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308696380.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:45 Heat of formation + Delta-G solvation = -110.517720 kcal Electronic energy + Delta-G solvation = -16903.545850 eV Core-core repulsion = 14221.351140 eV Total energy + Delta-G solvation = -2682.194709 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.99459 -39.45656 -37.21193 -36.15436 -34.37917 -30.21506 -29.68577 -29.17169 -26.21869 -24.15091 -23.35962 -21.65717 -20.11709 -18.99541 -18.61361 -17.85005 -17.09505 -16.59502 -16.17230 -15.84371 -15.22896 -15.03456 -14.40168 -14.24456 -13.73702 -13.34265 -13.05458 -12.96624 -12.73078 -12.58405 -12.49464 -12.28283 -12.06967 -12.02790 -11.99019 -11.84431 -11.58023 -11.29060 -11.16640 -10.60664 -9.06567 -8.19822 -6.29760 1.14153 1.41459 1.43065 1.54882 2.17082 2.40459 3.04896 3.13442 3.58253 3.61995 4.07247 4.27001 4.34979 4.39885 4.48140 4.65852 4.69113 4.74359 4.79872 4.99741 5.01574 5.08828 5.16304 5.19449 5.26400 5.29946 5.43605 5.56082 5.66378 6.02451 6.26002 6.48310 6.85483 7.03845 7.39471 8.91136 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.035997 B = 0.008584 C = 0.007928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.657547 B = 3261.108999 C = 3530.768037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.523 5.523 3 C 0.209 3.791 4 C -0.515 4.515 5 H 0.067 0.933 6 C -0.001 4.001 7 N -0.938 5.938 8 Si 0.971 3.029 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.263 1.263 12 C 0.106 3.894 13 C 0.499 3.501 14 O -0.552 6.552 15 O -0.496 6.496 16 C -0.104 4.104 17 C -0.117 4.117 18 C -0.109 4.109 19 C -0.152 4.152 20 H 0.063 0.937 21 H 0.095 0.905 22 H 0.019 0.981 23 H -0.001 1.001 24 H -0.037 1.037 25 H 0.263 0.737 26 H 0.415 0.585 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.386 -12.595 3.599 13.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.247 5.247 3 C 0.083 3.917 4 C -0.553 4.553 5 H 0.085 0.915 6 C -0.199 4.199 7 N -0.579 5.579 8 Si 0.795 3.205 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.187 1.187 12 C 0.015 3.985 13 C 0.343 3.657 14 O -0.443 6.443 15 O -0.307 6.307 16 C -0.141 4.141 17 C -0.154 4.154 18 C -0.147 4.147 19 C -0.191 4.191 20 H 0.081 0.919 21 H 0.113 0.887 22 H 0.037 0.963 23 H 0.017 0.983 24 H -0.019 1.019 25 H 0.072 0.928 26 H 0.275 0.725 27 H 0.125 0.875 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.401 -12.662 3.429 13.837 hybrid contribution 0.883 1.635 0.159 1.865 sum -3.519 -11.028 3.589 12.119 Atomic orbital electron populations 1.22418 0.86219 1.02074 1.00745 1.62326 1.09069 1.15196 1.38112 1.19426 0.93008 0.83624 0.95617 1.21415 1.37784 0.97670 0.98421 0.91528 1.25942 0.94945 0.97843 1.01169 1.70106 1.41498 1.11137 1.35135 0.85355 0.77824 0.78072 0.79207 1.19733 1.21069 1.18696 1.21863 0.85945 0.98914 0.91808 1.23532 0.92134 0.69423 0.80565 1.90611 1.71057 1.48387 1.34234 1.84711 1.27007 1.84059 1.34913 1.22567 1.03005 0.89499 0.99034 1.22550 1.01534 0.97984 0.93378 1.22292 0.99538 0.92783 1.00040 1.22840 1.00461 1.00166 0.95649 0.91855 0.88669 0.96284 0.98331 1.01907 0.92835 0.72531 0.87513 0.90808 0.92071 0.87598 0.90403 0.89654 0.92560 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.16 8.66 127.69 1.11 2.27 16 2 N -0.52 -22.10 4.38 -877.26 -3.85 -25.95 16 3 C 0.21 11.23 3.95 85.56 0.34 11.57 16 4 C -0.51 -29.20 8.65 25.60 0.22 -28.98 16 5 H 0.07 3.67 7.47 -2.91 -0.02 3.65 16 6 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 7 N -0.94 -57.39 13.29 21.45 0.28 -57.10 16 8 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 12 C 0.11 3.88 0.58 3.50 0.00 3.88 16 13 C 0.50 20.13 5.48 71.24 0.39 20.52 16 14 O -0.55 -23.77 16.25 21.96 0.36 -23.41 16 15 O -0.50 -18.86 12.38 -51.38 -0.64 -19.50 16 16 C -0.10 -2.76 5.83 31.69 0.18 -2.57 16 17 C -0.12 -2.53 6.91 31.91 0.22 -2.31 16 18 C -0.11 -2.64 6.83 31.67 0.22 -2.42 16 19 C -0.15 -5.31 5.09 31.32 0.16 -5.15 16 20 H 0.06 2.39 7.38 -2.38 -0.02 2.38 16 21 H 0.10 2.56 5.72 -2.39 -0.01 2.55 16 22 H 0.02 0.68 6.34 -2.39 -0.02 0.66 16 23 H 0.00 -0.08 5.97 -2.39 -0.01 -0.09 16 24 H -0.04 -2.15 7.08 -2.38 -0.02 -2.17 16 25 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 26 H 0.42 11.68 9.10 -74.06 -0.67 11.01 16 27 H 0.11 2.51 5.67 -2.39 -0.01 2.50 16 28 H 0.07 1.92 7.83 -2.39 -0.02 1.90 16 29 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 2.22 6.66 -2.38 -0.02 2.20 16 34 H 0.06 2.33 5.20 -2.39 -0.01 2.31 16 Total: -1.00 -70.75 269.91 1.93 -68.82 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.44 Total: 13.46 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 3.30 Total: -2.84 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -3.56 Total: -83.05 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -0.28 Total: -42.91 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -70.75 1.93 -68.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308696380.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.693 kcal (2) G-P(sol) polarization free energy of solvation -70.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds