Wall clock time and date at job start Thu Apr 9 2020 11:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37097 * 119.99976 * 2 1 4 4 H 1.08008 * 120.00123 * 202.11193 * 3 2 1 5 5 C 1.38949 * 120.00409 * 22.11283 * 3 2 1 6 6 N 1.31413 * 119.99755 * 15.73417 * 5 3 2 7 7 Si 1.86802 * 120.00315 * 195.73714 * 5 3 2 8 8 H 1.48502 * 109.46943 * 94.72373 * 7 5 3 9 9 H 1.48499 * 109.47232 * 214.72100 * 7 5 3 10 10 H 1.48503 * 109.47124 * 334.72591 * 7 5 3 11 11 C 1.34771 * 120.00022 * 179.97438 * 2 1 3 12 12 O 1.21296 * 120.00180 * 3.80829 * 11 2 1 13 13 C 1.50701 * 119.99944 * 183.80130 * 11 2 1 14 14 H 1.08995 * 109.47794 * 304.01712 * 13 11 2 15 15 C 1.52999 * 109.47143 * 64.02568 * 13 11 2 16 16 C 1.53000 * 109.47639 * 179.97438 * 15 13 11 17 17 C 1.52992 * 109.46887 * 299.99708 * 16 15 13 18 18 C 1.53003 * 109.47247 * 59.99829 * 17 16 15 19 19 H 1.08998 * 109.47064 * 179.97438 * 18 17 16 20 20 O 1.42903 * 109.47045 * 59.99970 * 18 17 16 21 21 C 1.53000 * 109.47317 * 299.99908 * 18 17 16 22 22 H 1.09001 * 109.47086 * 268.64308 * 1 2 3 23 23 H 1.09007 * 109.47190 * 28.64284 * 1 2 3 24 24 H 1.08997 * 109.47103 * 148.63894 * 1 2 3 25 25 H 0.96994 * 120.00289 * 179.97438 * 6 5 3 26 26 H 1.08995 * 109.47475 * 59.98948 * 15 13 11 27 27 H 1.09007 * 109.46734 * 299.99414 * 15 13 11 28 28 H 1.08996 * 109.47510 * 179.97438 * 16 15 13 29 29 H 1.09007 * 109.46641 * 59.99535 * 16 15 13 30 30 H 1.08999 * 109.47481 * 299.99655 * 17 16 15 31 31 H 1.09007 * 109.47050 * 179.97438 * 17 16 15 32 32 H 0.96703 * 114.00209 * 59.99961 * 20 18 17 33 33 H 1.08990 * 109.47465 * 179.97438 * 21 18 17 34 34 H 1.09002 * 109.46582 * 300.00522 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1709 1.2217 -0.3521 5 6 1.5324 2.3464 0.4530 6 7 0.4270 2.2686 1.1593 7 14 2.2728 4.0153 0.0579 8 1 1.6299 4.5657 -1.1624 9 1 2.0453 4.9401 1.1973 10 1 3.7319 3.8668 -0.1755 11 6 2.1388 -1.1672 0.0005 12 8 1.5344 -2.2165 -0.0688 13 6 3.6433 -1.1685 0.0870 14 1 4.0545 -0.5664 -0.7232 15 6 4.0774 -0.5800 1.4309 16 6 5.6049 -0.5819 1.5192 17 6 6.1207 -2.0174 1.4007 18 6 5.6866 -2.6061 0.0568 19 1 6.0545 -3.6286 -0.0277 20 8 6.2261 -1.8169 -1.0054 21 6 4.1592 -2.6041 -0.0314 22 1 -0.3633 -0.0243 1.0274 23 1 -0.3634 0.9020 -0.4926 24 1 -0.3633 -0.8775 -0.5348 25 1 -0.0043 3.0777 1.4758 26 1 3.6662 -1.1821 2.2411 27 1 3.7096 0.4427 1.5155 28 1 5.9141 -0.1622 2.4764 29 1 6.0163 0.0201 0.7089 30 1 5.7092 -2.6194 2.2109 31 1 7.2089 -2.0187 1.4631 32 1 7.1922 -1.7733 -1.0116 33 1 3.8500 -3.0230 -0.9889 34 1 3.7478 -3.2060 0.7789 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336159611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:43 Heat of formation + Delta-G solvation = -99.169699 kcal Electronic energy + Delta-G solvation = -16820.160941 eV Core-core repulsion = 14138.458319 eV Total energy + Delta-G solvation = -2681.702622 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.37579 -37.64646 -34.73906 -34.48965 -31.40039 -30.45839 -29.38061 -26.26702 -24.68641 -22.33084 -21.91940 -19.56673 -18.84796 -17.13622 -16.32589 -15.97202 -15.05134 -14.43705 -14.30161 -14.09915 -13.67711 -13.39775 -12.71496 -12.46999 -12.01486 -11.85589 -11.51673 -11.34129 -11.28461 -11.00389 -10.80059 -10.66747 -10.47409 -10.33413 -10.30299 -10.00982 -9.73502 -9.31982 -9.01539 -8.21773 -7.66211 -6.33836 -3.89718 3.12470 3.22452 3.24738 3.98313 4.12410 4.53527 4.83121 5.06739 5.12264 5.13552 5.34680 5.72163 5.78986 5.82507 5.96184 5.98771 6.08361 6.22747 6.42579 6.49864 6.60659 6.66066 6.77635 6.93300 7.04210 7.09457 7.16598 7.38458 7.45599 7.84716 7.89122 8.43201 9.12128 9.60361 10.01430 10.69622 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.027973 B = 0.010017 C = 0.008234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.739898 B = 2794.475242 C = 3399.816078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.444 5.444 3 C -0.330 4.330 4 H 0.098 0.902 5 C 0.036 3.964 6 N -0.869 5.869 7 Si 0.917 3.083 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.268 1.268 11 C 0.460 3.540 12 O -0.616 6.616 13 C -0.077 4.077 14 H 0.089 0.911 15 C -0.112 4.112 16 C -0.112 4.112 17 C -0.151 4.151 18 C 0.105 3.895 19 H 0.048 0.952 20 O -0.560 6.560 21 C -0.089 4.089 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.032 0.968 25 H 0.268 0.732 26 H 0.051 0.949 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.368 0.632 33 H 0.067 0.933 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.139 -3.225 0.277 10.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.161 5.161 3 C -0.458 4.458 4 H 0.116 0.884 5 C -0.169 4.169 6 N -0.507 5.507 7 Si 0.744 3.256 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.192 1.192 11 C 0.248 3.752 12 O -0.504 6.504 13 C -0.098 4.098 14 H 0.107 0.893 15 C -0.150 4.150 16 C -0.149 4.149 17 C -0.189 4.189 18 C 0.047 3.953 19 H 0.066 0.934 20 O -0.365 6.365 21 C -0.127 4.127 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.213 0.787 33 H 0.085 0.915 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.017 -3.488 0.204 9.671 hybrid contribution 0.857 0.968 0.103 1.297 sum 9.874 -2.520 0.307 10.195 Atomic orbital electron populations 1.21222 0.81028 0.99002 1.00824 1.43565 1.05509 1.04866 1.62202 1.19628 0.99400 0.84576 1.42170 0.88418 1.25297 0.96583 0.99898 0.95141 1.70051 1.19176 1.29285 1.32141 0.86062 0.79558 0.81888 0.78110 1.20404 1.20965 1.19224 1.20244 0.89491 0.83497 0.81925 1.90492 1.70585 1.31776 1.57545 1.20810 0.93279 0.96304 0.99397 0.89337 1.21534 0.93979 1.03776 0.95690 1.21442 0.96819 0.95457 1.01197 1.22261 0.99827 0.98465 0.98316 1.21868 0.95201 0.92382 0.85894 0.93395 1.86610 1.24629 1.73730 1.51485 1.21326 0.91009 0.97403 1.02952 0.93252 0.91802 0.94902 0.92183 0.93000 0.88652 0.92594 0.91544 0.91321 0.92546 0.78655 0.91473 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.15 8.72 59.84 0.52 3.68 16 2 N -0.44 -11.70 3.01 -122.19 -0.37 -12.07 16 3 C -0.33 -8.46 7.17 -14.93 -0.11 -8.57 16 4 H 0.10 2.41 6.14 -52.48 -0.32 2.09 16 5 C 0.04 0.91 5.00 -17.47 -0.09 0.82 16 6 N -0.87 -23.05 10.86 55.50 0.60 -22.45 16 7 Si 0.92 19.63 29.58 -169.99 -5.03 14.60 16 8 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 11 C 0.46 11.68 6.98 -10.99 -0.08 11.61 16 12 O -0.62 -17.02 15.56 5.54 0.09 -16.93 16 13 C -0.08 -1.61 1.57 -91.77 -0.14 -1.75 16 14 H 0.09 1.93 6.85 -51.93 -0.36 1.57 16 15 C -0.11 -2.16 4.93 -26.73 -0.13 -2.29 16 16 C -0.11 -1.70 5.78 -26.74 -0.15 -1.86 16 17 C -0.15 -1.97 5.64 -26.73 -0.15 -2.12 16 18 C 0.11 1.51 3.77 -26.73 -0.10 1.41 16 19 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 20 O -0.56 -8.08 11.97 -35.23 -0.42 -8.50 16 21 C -0.09 -1.64 4.24 -26.73 -0.11 -1.75 16 22 H 0.05 1.31 7.73 -51.93 -0.40 0.91 16 23 H 0.06 1.64 6.92 -51.92 -0.36 1.28 16 24 H 0.03 0.81 7.41 -51.93 -0.38 0.43 16 25 H 0.27 6.72 8.31 -40.82 -0.34 6.39 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.10 2.06 5.83 -51.93 -0.30 1.76 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.03 7.68 -51.92 -0.40 0.63 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.37 3.51 9.08 45.56 0.41 3.93 16 33 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 34 H 0.08 1.42 8.06 -51.93 -0.42 1.00 16 LS Contribution 268.96 15.07 4.05 4.05 Total: -1.00 -30.10 268.96 -5.82 -35.92 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.20 Total: 6.20 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -0.54 Total: -0.83 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.23 Total: -34.51 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.34 Total: -25.43 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.10 -5.82 -35.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336159611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.254 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds