Wall clock time and date at job start Thu Apr 9 2020 11:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99588 * 2 1 4 4 H 1.48494 * 109.47399 * 270.00260 * 3 2 1 5 5 H 1.48500 * 109.47096 * 30.00421 * 3 2 1 6 6 H 1.48497 * 109.47090 * 149.99876 * 3 2 1 7 7 C 1.37873 * 120.00562 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99955 * 0.02562 * 7 2 1 9 9 C 1.50709 * 120.00070 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.46681 * 180.02562 * 9 7 2 11 11 C 1.48001 * 111.00222 * 293.95585 * 10 9 7 12 12 C 1.50447 * 112.82569 * 191.34712 * 11 10 9 13 13 C 1.54308 * 108.49739 * 93.72476 * 12 11 10 14 14 C 1.45879 * 112.19063 * 281.46520 * 13 12 11 15 15 H 1.09001 * 108.93574 * 300.51120 * 14 13 12 16 16 C 1.53006 * 108.93783 * 181.81737 * 14 13 12 17 17 C 1.52997 * 109.47127 * 65.00073 * 16 14 13 18 18 O 1.42895 * 109.47269 * 179.97438 * 17 16 14 19 19 C 1.54306 * 112.18692 * 61.11992 * 14 13 12 20 20 C 1.48005 * 110.99485 * 165.23789 * 10 9 7 21 21 H 0.96992 * 120.00378 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.46626 * 60.00417 * 9 7 2 23 23 H 1.09000 * 109.47075 * 300.00449 * 9 7 2 24 24 H 1.08992 * 108.81321 * 70.48532 * 11 10 9 25 25 H 1.09001 * 108.81013 * 312.20438 * 11 10 9 26 26 H 1.09001 * 109.63237 * 334.02615 * 12 11 10 27 27 H 1.08996 * 109.63472 * 213.42687 * 12 11 10 28 28 H 1.09003 * 108.93619 * 160.76176 * 13 12 11 29 29 H 1.09005 * 108.87011 * 42.11408 * 13 12 11 30 30 H 1.09001 * 109.47002 * 184.99647 * 16 14 13 31 31 H 1.08993 * 109.46955 * 305.00084 * 16 14 13 32 32 H 1.09001 * 109.47289 * 299.99953 * 17 16 14 33 33 H 1.09004 * 109.47261 * 59.99697 * 17 16 14 34 34 H 0.96700 * 114.00516 * 179.97438 * 18 17 16 35 35 H 1.09003 * 109.63201 * 41.16553 * 19 14 13 36 36 H 1.09000 * 109.63510 * 161.76010 * 19 14 13 37 37 H 1.09005 * 108.80717 * 205.69903 * 20 10 9 38 38 H 1.09000 * 108.81319 * 323.96870 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5117 -1.1938 -0.0011 10 7 4.0014 -2.5788 -0.0022 11 6 3.6498 -3.2667 1.2601 12 6 4.3557 -4.5854 1.4224 13 6 5.6471 -4.3527 2.2343 14 6 6.7170 -3.7893 1.4182 15 1 6.9357 -4.4748 0.5994 16 6 7.9701 -3.6322 2.2819 17 6 8.4672 -5.0127 2.7153 18 8 9.6379 -4.8661 3.5215 19 6 6.3385 -2.4139 0.8299 20 6 5.4378 -2.6331 -0.3549 21 1 -0.4850 0.8399 0.0004 22 1 3.8753 -0.6802 0.8889 23 1 3.8746 -0.6797 -0.8911 24 1 2.5738 -3.4395 1.2783 25 1 3.9142 -2.6212 2.0976 26 1 4.6074 -4.9891 0.4417 27 1 3.7095 -5.2837 1.9542 28 1 5.9812 -5.3043 2.6479 29 1 5.4296 -3.6680 3.0541 30 1 8.7477 -3.1304 1.7060 31 1 7.7311 -3.0386 3.1642 32 1 7.6896 -5.5146 3.2912 33 1 8.7061 -5.6064 1.8329 34 1 10.0084 -5.7032 3.8330 35 1 5.8156 -1.8247 1.5833 36 1 7.2404 -1.8906 0.5125 37 1 5.6568 -3.6095 -0.7871 38 1 5.6457 -1.8663 -1.1012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591478557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:20 Heat of formation + Delta-G solvation = -61.464311 kcal Electronic energy + Delta-G solvation = -16457.634201 eV Core-core repulsion = 13913.399702 eV Total energy + Delta-G solvation = -2544.234499 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.39202 -37.11070 -34.99799 -32.50087 -32.01470 -30.06222 -27.60319 -25.16287 -24.63884 -21.96295 -21.56729 -19.97612 -18.91214 -17.56984 -16.85706 -15.60822 -15.34943 -15.06169 -14.51032 -14.09334 -13.56098 -13.35930 -13.18574 -12.83720 -12.40285 -12.33398 -11.88638 -11.69463 -11.40810 -11.29731 -10.99606 -10.71244 -10.51363 -10.42554 -10.26814 -10.13270 -10.06078 -9.84004 -9.67057 -9.22355 -8.53264 -7.15619 -6.01927 -3.98616 3.30332 3.37676 3.40052 4.00358 4.44818 4.69066 4.74788 4.81878 5.02788 5.13157 5.27017 5.30747 5.33809 5.47376 5.60959 5.70534 5.77150 5.81403 5.92401 6.03549 6.12932 6.19245 6.23876 6.30022 6.39009 6.42820 6.61390 6.69828 6.80510 6.94590 7.07754 7.40274 7.67123 7.98581 8.18077 8.71905 9.07383 9.60559 11.11396 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044920 B = 0.005895 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.179182 B = 4748.924627 C = 5043.610824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.507 4.507 8 H 0.080 0.920 9 C 0.165 3.835 10 N -0.538 5.538 11 C 0.074 3.926 12 C -0.120 4.120 13 C -0.119 4.119 14 C -0.078 4.078 15 H 0.068 0.932 16 C -0.117 4.117 17 C 0.072 3.928 18 O -0.578 6.578 19 C -0.143 4.143 20 C 0.058 3.942 21 H 0.263 0.737 22 H -0.014 1.014 23 H 0.022 0.978 24 H 0.077 0.923 25 H 0.024 0.976 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.376 0.624 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.775 -9.647 4.623 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.545 4.545 8 H 0.098 0.902 9 C 0.039 3.961 10 N -0.263 5.263 11 C -0.054 4.054 12 C -0.158 4.158 13 C -0.157 4.157 14 C -0.096 4.096 15 H 0.087 0.913 16 C -0.155 4.155 17 C -0.005 4.005 18 O -0.383 6.383 19 C -0.182 4.182 20 C -0.071 4.071 21 H 0.073 0.927 22 H 0.004 0.996 23 H 0.040 0.960 24 H 0.095 0.905 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.223 0.777 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.259 -9.128 4.156 18.260 hybrid contribution 0.871 0.832 0.733 1.410 sum 16.130 -8.296 4.889 18.786 Atomic orbital electron populations 1.69893 1.06111 1.26746 1.51412 1.24902 0.94715 0.98798 0.94963 0.86881 0.80313 0.84130 0.78562 1.20172 1.21258 1.19321 1.21089 0.88918 0.94652 1.49880 0.90215 1.20177 0.96855 0.84277 0.94788 1.61797 1.12087 1.18734 1.33687 1.21584 1.00655 0.92961 0.90168 1.21472 0.95821 0.98138 1.00336 1.20761 0.95689 1.00415 0.98811 1.20099 0.94006 0.97694 0.97812 0.91322 1.21685 0.97456 0.95977 1.00356 1.22353 0.86587 0.98113 0.93443 1.86484 1.44855 1.35514 1.71448 1.22013 1.00146 0.96138 0.99904 1.21879 0.87926 1.01223 0.96055 0.92738 0.99613 0.96012 0.90511 0.95778 0.91078 0.91707 0.92547 0.92173 0.91408 0.91406 0.93322 0.93800 0.77722 0.91536 0.91946 0.92023 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.79 27.47 -169.99 -4.67 17.12 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 7 C -0.51 -14.59 9.20 -34.44 -0.32 -14.90 16 8 H 0.08 2.49 7.36 -52.48 -0.39 2.11 16 9 C 0.17 4.07 3.71 -4.97 -0.02 4.05 16 10 N -0.54 -11.28 4.67 -237.34 -1.11 -12.39 16 11 C 0.07 1.41 4.60 -4.49 -0.02 1.38 16 12 C -0.12 -1.75 5.63 -27.32 -0.15 -1.90 16 13 C -0.12 -1.51 4.37 -29.42 -0.13 -1.63 16 14 C -0.08 -0.95 1.74 -93.30 -0.16 -1.12 16 15 H 0.07 0.80 7.50 -51.93 -0.39 0.41 16 16 C -0.12 -1.34 4.97 -26.73 -0.13 -1.48 16 17 C 0.07 0.71 6.75 37.16 0.25 0.96 16 18 O -0.58 -5.95 13.66 -35.23 -0.48 -6.43 16 19 C -0.14 -2.10 4.96 -27.33 -0.14 -2.24 16 20 C 0.06 0.97 5.15 -4.49 -0.02 0.95 16 21 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 22 H -0.01 -0.34 6.88 -51.93 -0.36 -0.70 16 23 H 0.02 0.54 7.10 -51.93 -0.37 0.17 16 24 H 0.08 1.64 7.17 -51.93 -0.37 1.27 16 25 H 0.02 0.48 6.37 -51.93 -0.33 0.14 16 26 H 0.07 1.04 7.08 -51.93 -0.37 0.68 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.60 6.20 -51.93 -0.32 0.28 16 29 H 0.06 0.82 7.51 -51.93 -0.39 0.43 16 30 H 0.07 0.79 7.97 -51.93 -0.41 0.37 16 31 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 32 H 0.05 0.44 6.45 -51.93 -0.33 0.11 16 33 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.38 2.04 9.12 45.56 0.42 2.46 16 35 H 0.07 1.12 6.84 -51.93 -0.36 0.77 16 36 H 0.06 0.83 7.88 -51.93 -0.41 0.42 16 37 H 0.06 0.95 6.58 -51.93 -0.34 0.61 16 38 H 0.06 1.04 7.56 -51.93 -0.39 0.65 16 LS Contribution 285.37 15.07 4.30 4.30 Total: -1.00 -31.80 285.37 -7.67 -39.48 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -5.55 Total: -0.89 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -0.94 Total: -14.05 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: -0.33 Total: -39.53 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.48 Total: -6.43 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.80 -7.67 -39.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591478557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.985 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds