Wall clock time and date at job start Thu Apr 9 2020 11:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99738 * 2 1 4 4 H 1.48502 * 109.47421 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47145 * 299.99562 * 3 2 1 6 6 H 1.48495 * 109.47579 * 59.99454 * 3 2 1 7 7 C 1.37876 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99929 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46880 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99853 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.46985 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.46948 * 179.97438 * 12 11 10 14 14 O 1.42897 * 109.47093 * 179.97438 * 13 12 11 15 15 C 1.42898 * 114.00017 * 179.97438 * 14 13 12 16 16 C 1.54894 * 110.48190 * 93.24436 * 15 14 13 17 17 C 1.55238 * 102.58338 * 156.67678 * 16 15 14 18 18 C 1.54266 * 104.23333 * 322.08174 * 17 16 15 19 19 C 1.53869 * 106.59800 * 23.61579 * 18 17 16 20 20 H 0.96997 * 120.00077 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.47108 * 59.99563 * 9 7 2 22 22 H 1.08994 * 109.46930 * 299.99520 * 9 7 2 23 23 H 1.00894 * 111.00137 * 303.95386 * 10 9 7 24 24 H 1.08999 * 109.47180 * 60.00034 * 11 10 9 25 25 H 1.08999 * 109.46785 * 300.00250 * 11 10 9 26 26 H 1.08999 * 109.47091 * 60.00031 * 12 11 10 27 27 H 1.08991 * 109.47437 * 299.99606 * 12 11 10 28 28 H 1.08999 * 109.47003 * 60.00218 * 13 12 11 29 29 H 1.08999 * 109.47000 * 300.00412 * 13 12 11 30 30 H 1.09002 * 110.43427 * 330.70321 * 15 14 13 31 31 H 1.08996 * 110.75388 * 275.06031 * 16 15 14 32 32 H 1.08993 * 110.76071 * 38.44257 * 16 15 14 33 33 H 1.09005 * 110.46917 * 203.39204 * 17 16 15 34 34 H 1.09007 * 110.58541 * 80.83124 * 17 16 15 35 35 H 1.08999 * 110.03060 * 264.32313 * 18 17 16 36 36 H 1.09006 * 110.06829 * 142.91691 * 18 17 16 37 37 H 1.09001 * 110.02983 * 240.71432 * 19 18 17 38 38 H 1.08996 * 110.07773 * 119.30576 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 1.5056 -4.9070 0.0011 12 6 2.5306 -6.0429 0.0005 13 6 1.8012 -7.3880 0.0018 14 8 2.7585 -8.4489 0.0005 15 6 2.1787 -9.7550 0.0022 16 6 2.0312 -10.2843 -1.4460 17 6 1.9933 -11.8227 -1.2415 18 6 3.0074 -12.0798 -0.1078 19 6 3.1252 -10.7651 0.6830 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8903 23 1 2.8407 -3.5486 -0.7808 24 1 0.8804 -4.9818 -0.8886 25 1 0.8810 -4.9812 0.8914 26 1 3.1561 -5.9684 0.8900 27 1 3.1548 -5.9686 -0.8899 28 1 1.1754 -7.4628 -0.8875 29 1 1.1773 -7.4621 0.8924 30 1 1.2110 -9.7411 0.5037 31 1 1.1037 -9.9288 -1.8946 32 1 2.8901 -9.9961 -2.0520 33 1 2.3013 -12.3360 -2.1525 34 1 0.9961 -12.1450 -0.9417 35 1 3.9760 -12.3512 -0.5277 36 1 2.6466 -12.8761 0.5433 37 1 4.1511 -10.3984 0.6469 38 1 2.8215 -10.9224 1.7179 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591728742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:22 Heat of formation + Delta-G solvation = -76.110781 kcal Electronic energy + Delta-G solvation = -15176.406032 eV Core-core repulsion = 12631.536414 eV Total energy + Delta-G solvation = -2544.869618 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.07270 -36.60306 -35.41046 -32.83304 -31.01625 -28.95735 -27.90715 -26.52241 -23.84034 -21.36622 -21.19433 -20.87468 -20.32533 -17.11856 -16.34179 -15.97690 -15.76111 -14.90461 -14.65557 -14.46543 -13.68868 -13.57595 -13.10996 -12.81139 -12.69607 -12.18104 -11.67783 -11.55276 -11.42879 -11.33395 -11.16447 -11.03163 -10.80801 -10.70658 -10.63309 -10.55842 -10.44000 -9.88104 -9.47678 -9.15711 -8.47628 -7.28937 -6.02531 -4.04387 3.32065 3.39080 3.44656 3.58823 4.33963 4.38548 4.44539 4.65816 5.00109 5.13359 5.14812 5.21024 5.25496 5.33482 5.36363 5.43674 5.48007 5.58751 5.62614 5.68371 5.76183 5.78505 5.95145 5.96645 5.99519 6.05372 6.12696 6.50258 6.56238 7.24846 7.29098 7.42769 7.80016 8.13520 8.40572 8.62589 9.05369 9.60621 11.08778 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.091630 B = 0.003210 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 305.502774 B = 8721.914225 C = 8833.457581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.691 5.691 11 C 0.062 3.938 12 C -0.114 4.114 13 C 0.065 3.935 14 O -0.380 6.380 15 C 0.082 3.918 16 C -0.148 4.148 17 C -0.124 4.124 18 C -0.122 4.122 19 C -0.123 4.123 20 H 0.261 0.739 21 H -0.014 1.014 22 H 0.028 0.972 23 H 0.329 0.671 24 H 0.018 0.982 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 -22.526 -1.404 22.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.066 3.934 10 N -0.321 5.321 11 C -0.068 4.068 12 C -0.152 4.152 13 C -0.012 4.012 14 O -0.299 6.299 15 C 0.024 3.976 16 C -0.185 4.185 17 C -0.162 4.162 18 C -0.160 4.160 19 C -0.161 4.161 20 H 0.070 0.930 21 H 0.004 0.996 22 H 0.046 0.954 23 H 0.146 0.854 24 H 0.036 0.964 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.212 -22.353 -0.705 22.593 hybrid contribution -0.361 0.873 -0.917 1.317 sum 2.851 -21.480 -1.622 21.729 Atomic orbital electron populations 1.69976 1.06107 1.26688 1.51083 1.25006 0.94898 0.99437 0.95352 0.86411 0.80084 0.83246 0.77492 1.19609 1.21089 1.20981 1.21243 0.93608 0.90229 1.50124 0.91845 1.19569 0.90622 0.87409 0.95783 1.60628 1.21272 1.01187 1.49022 1.21759 0.95067 0.90173 0.99783 1.21503 0.98977 0.91243 1.03487 1.22544 0.91514 0.87315 0.99857 1.87917 1.33569 1.13477 1.94913 1.22980 0.96231 0.83209 0.95165 1.23058 1.02449 0.95392 0.97644 1.22334 0.99389 0.95807 0.98638 1.22082 0.99676 0.97060 0.97194 1.22183 1.00992 0.93959 0.98970 0.92966 0.99596 0.95401 0.85443 0.96401 0.91750 0.90525 0.91624 0.93632 0.93358 0.91734 0.91494 0.90425 0.91469 0.91584 0.91572 0.91709 0.90444 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.89 9.32 -34.44 -0.32 -15.21 16 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.19 5.20 5.44 -4.97 -0.03 5.17 16 10 N -0.69 -15.38 6.49 -115.06 -0.75 -16.13 16 11 C 0.06 1.14 5.69 -3.83 -0.02 1.11 16 12 C -0.11 -1.74 5.84 -26.73 -0.16 -1.90 16 13 C 0.06 0.85 5.79 37.16 0.22 1.07 16 14 O -0.38 -5.09 10.05 -35.23 -0.35 -5.45 16 15 C 0.08 0.87 3.33 -25.07 -0.08 0.78 16 16 C -0.15 -1.38 6.65 -24.55 -0.16 -1.54 16 17 C -0.12 -0.93 6.84 -24.88 -0.17 -1.10 16 18 C -0.12 -0.91 6.80 -25.62 -0.17 -1.08 16 19 C -0.12 -1.12 6.56 -25.62 -0.17 -1.29 16 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 21 H -0.01 -0.39 8.14 -51.93 -0.42 -0.81 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.33 6.97 8.72 -39.30 -0.34 6.63 16 24 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.60 8.10 -51.93 -0.42 0.18 16 30 H 0.06 0.64 7.84 -51.93 -0.41 0.23 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 311.24 15.07 4.69 4.69 Total: -1.00 -30.66 311.24 -8.92 -39.58 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -7.05 Total: -0.62 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -1.17 Total: -12.50 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: -0.01 Total: -42.65 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.35 Total: -5.45 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.66 -8.92 -39.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591728742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.532 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds