Wall clock time and date at job start Thu Apr 9 2020 11:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 O 1.42902 * 109.47296 * 65.00043 * 3 2 1 5 5 C 1.52997 * 109.47105 * 305.00259 * 3 2 1 6 6 C 1.53008 * 109.47301 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47255 * 59.99553 * 6 5 3 8 8 N 1.46910 * 109.46729 * 60.00156 * 7 6 5 9 9 C 1.46898 * 110.99538 * 85.00392 * 8 7 6 10 10 C 1.50705 * 109.46675 * 180.02562 * 9 8 7 11 11 H 1.08001 * 120.00002 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99736 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00320 * 359.97438 * 12 10 9 14 14 Si 1.86809 * 119.99966 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46699 * 89.99658 * 14 12 10 16 16 H 1.48497 * 109.47227 * 209.99601 * 14 12 10 17 17 H 1.48501 * 109.47023 * 329.99838 * 14 12 10 18 18 C 1.52997 * 109.47331 * 300.00429 * 7 6 5 19 19 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 25 25 H 0.96707 * 113.99582 * 300.00457 * 4 3 2 26 26 H 1.08998 * 109.47494 * 299.99463 * 5 3 2 27 27 H 1.08993 * 109.47314 * 59.99963 * 5 3 2 28 28 H 1.09003 * 109.46865 * 299.99556 * 6 5 3 29 29 H 1.09000 * 109.47044 * 179.97438 * 6 5 3 30 30 H 1.08992 * 109.47292 * 179.97438 * 7 6 5 31 31 H 1.00894 * 111.00043 * 321.04773 * 8 7 6 32 32 H 1.08996 * 109.47056 * 299.99119 * 9 8 7 33 33 H 1.08996 * 109.47839 * 60.00126 * 9 8 7 34 34 H 0.97003 * 120.00002 * 180.02562 * 13 12 10 35 35 H 1.08998 * 109.47494 * 300.00019 * 18 7 6 36 36 H 1.09001 * 109.47187 * 179.97438 * 18 7 6 37 37 H 1.09000 * 109.47346 * 300.00002 * 19 3 2 38 38 H 1.09007 * 109.46964 * 60.00529 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 1.6621 2.0813 1.2210 5 6 1.4300 2.1991 -1.1816 6 6 1.9396 3.6418 -1.1812 7 6 3.4644 3.6441 -1.3066 8 7 3.8535 2.9876 -2.5619 9 6 3.8228 3.9360 -3.6833 10 6 4.2262 3.2280 -4.9511 11 1 4.4803 2.1786 -4.9261 12 6 4.2708 3.9199 -6.1428 13 7 3.9609 5.1977 -6.1733 14 14 4.7715 3.0425 -7.7141 15 1 3.5653 2.4794 -8.3724 16 1 5.4311 4.0066 -8.6308 17 1 5.7159 1.9438 -7.3882 18 6 4.0745 2.8875 -0.1250 19 6 3.5648 1.4442 -0.1257 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 0.7068 2.1164 1.3672 26 1 1.7183 1.7118 -2.1130 27 1 0.3437 2.1978 -1.0920 28 1 1.6508 4.1289 -0.2498 29 1 1.5053 4.1807 -2.0233 30 1 3.8274 4.6718 -1.3068 31 1 3.2673 2.1879 -2.7485 32 1 2.8143 4.3340 -3.7951 33 1 4.5164 4.7536 -3.4870 34 1 3.9919 5.6844 -7.0119 35 1 3.7858 3.3744 0.8064 36 1 5.1608 2.8888 -0.2146 37 1 3.9995 0.9052 0.7161 38 1 3.8532 0.9569 -1.0571 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591758219.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:25 Heat of formation + Delta-G solvation = -76.137003 kcal Electronic energy + Delta-G solvation = -16745.052234 eV Core-core repulsion = 14200.181479 eV Total energy + Delta-G solvation = -2544.870755 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.78388 -36.27293 -33.33410 -32.80717 -31.36823 -30.36352 -28.16322 -25.79458 -23.67406 -22.32623 -21.63347 -20.40530 -18.70108 -16.57846 -16.23652 -15.60282 -14.89613 -14.66400 -14.42592 -13.91082 -13.48595 -13.32968 -12.88412 -12.60267 -12.15687 -12.08707 -11.76874 -11.68908 -11.43450 -11.23370 -10.99527 -10.87597 -10.80430 -10.62012 -10.31277 -10.27799 -9.78065 -9.64772 -9.43540 -9.08963 -8.46108 -7.16970 -6.00870 -4.02611 3.32214 3.38442 3.43069 4.35991 4.44712 4.74496 4.84834 4.98384 5.14487 5.28998 5.34830 5.37237 5.52737 5.61403 5.66856 5.74229 5.82798 5.86661 5.90301 5.99392 6.06328 6.15096 6.26862 6.34938 6.47730 6.54133 6.63680 6.73183 6.85034 7.34496 7.50583 7.77557 7.82511 8.18278 8.48047 8.69445 9.07425 9.62270 11.10140 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037303 B = 0.006305 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.423606 B = 4439.535148 C = 4697.934632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.151 4.151 3 C 0.136 3.864 4 O -0.556 6.556 5 C -0.144 4.144 6 C -0.143 4.143 7 C 0.085 3.915 8 N -0.684 5.684 9 C 0.193 3.807 10 C -0.513 4.513 11 H 0.061 0.939 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.897 3.103 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.273 1.273 18 C -0.099 4.099 19 C -0.100 4.100 20 H 0.061 0.939 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.366 0.634 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.326 0.674 32 H -0.014 1.014 33 H 0.026 0.974 34 H 0.261 0.739 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.530 -7.683 12.656 16.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.189 4.189 3 C 0.096 3.904 4 O -0.361 6.361 5 C -0.182 4.182 6 C -0.182 4.182 7 C -0.026 4.026 8 N -0.315 5.315 9 C 0.067 3.933 10 C -0.552 4.552 11 H 0.079 0.921 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.725 3.275 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.137 4.137 19 C -0.138 4.138 20 H 0.080 0.920 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.213 0.787 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.145 0.855 32 H 0.003 0.997 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.196 -7.388 12.682 15.569 hybrid contribution -1.417 -0.295 -1.227 1.898 sum -6.613 -7.683 11.455 15.296 Atomic orbital electron populations 1.21867 0.96026 1.01826 1.01830 1.22214 0.96146 0.97695 1.02830 1.21234 0.95608 0.89831 0.83777 1.86555 1.27479 1.81388 1.40707 1.22233 0.99792 0.97162 0.99012 1.22090 0.98598 0.95899 1.01635 1.21494 0.91635 0.97933 0.91584 1.60828 1.57327 1.10776 1.02574 1.19564 0.95069 0.91426 0.87287 1.21209 1.45264 0.96689 0.91997 0.92107 1.24988 0.95557 0.94875 0.99163 1.69967 1.49185 1.07984 1.26645 0.86514 0.78640 0.79386 0.82958 1.20794 1.21253 1.19785 1.21437 1.00111 0.94794 0.97406 1.21472 0.91703 0.98492 1.02120 0.92015 0.92940 0.92674 0.91476 0.90891 0.78712 0.90738 0.91991 0.91932 0.92091 0.91304 0.85468 0.99664 0.95591 0.92975 0.92081 0.91831 0.92302 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.21 37.16 0.34 -1.11 16 2 C -0.15 -1.63 5.23 -26.74 -0.14 -1.77 16 3 C 0.14 1.72 0.73 -90.63 -0.07 1.66 16 4 O -0.56 -6.96 11.62 -35.23 -0.41 -7.37 16 5 C -0.14 -2.01 4.17 -26.73 -0.11 -2.12 16 6 C -0.14 -2.32 5.37 -26.73 -0.14 -2.47 16 7 C 0.08 1.54 2.86 -67.71 -0.19 1.35 16 8 N -0.68 -14.67 5.75 -107.99 -0.62 -15.29 16 9 C 0.19 5.11 5.24 -4.97 -0.03 5.09 16 10 C -0.51 -14.66 9.32 -34.44 -0.32 -14.98 16 11 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 14 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 C -0.10 -1.58 5.49 -26.70 -0.15 -1.73 16 19 C -0.10 -1.43 4.71 -26.70 -0.13 -1.56 16 20 H 0.06 0.59 6.35 -51.93 -0.33 0.26 16 21 H 0.05 0.42 6.89 -51.93 -0.36 0.06 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.37 3.43 7.53 45.56 0.34 3.77 16 26 H 0.07 1.14 6.26 -51.93 -0.33 0.82 16 27 H 0.06 0.76 6.34 -51.93 -0.33 0.43 16 28 H 0.06 0.95 7.68 -51.93 -0.40 0.55 16 29 H 0.06 1.10 7.45 -51.93 -0.39 0.72 16 30 H 0.07 1.35 7.80 -51.93 -0.40 0.95 16 31 H 0.33 6.70 5.56 -39.29 -0.22 6.48 16 32 H -0.01 -0.40 7.43 -51.93 -0.39 -0.79 16 33 H 0.03 0.75 8.05 -51.93 -0.42 0.33 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.06 0.94 7.68 -51.93 -0.40 0.54 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.25 7.21 -51.92 -0.37 0.87 16 LS Contribution 288.37 15.07 4.35 4.35 Total: -1.00 -30.30 288.37 -7.64 -37.95 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.64 Total: 6.06 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -1.03 Total: -16.14 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.11 Total: -41.66 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.41 Total: -7.37 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.30 -7.64 -37.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591758219.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.191 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds