Wall clock time and date at job start Thu Apr 9 2020 11:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00339 * 2 1 4 4 H 1.48505 * 109.46869 * 270.00353 * 3 2 1 5 5 H 1.48499 * 109.46989 * 30.00004 * 3 2 1 6 6 H 1.48494 * 109.47322 * 149.99995 * 3 2 1 7 7 C 1.37874 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00598 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00163 * 359.97438 * 7 2 1 10 10 N 1.46891 * 109.47707 * 179.97438 * 9 7 2 11 11 C 1.46895 * 111.00390 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47374 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47002 * 305.00055 * 12 11 10 14 14 O 1.42895 * 109.47036 * 64.99532 * 12 11 10 15 15 C 1.52997 * 109.47164 * 184.99793 * 12 11 10 16 16 C 1.52996 * 109.46975 * 179.97438 * 15 12 11 17 17 C 1.53000 * 109.47328 * 180.02562 * 16 15 12 18 18 C 1.52997 * 109.47060 * 60.00126 * 17 16 15 19 19 C 1.53006 * 109.47127 * 300.00449 * 18 17 16 20 20 C 1.52997 * 109.47164 * 59.99836 * 19 18 17 21 21 H 0.97001 * 119.99444 * 0.02562 * 1 2 3 22 22 H 1.09008 * 109.46338 * 59.99969 * 9 7 2 23 23 H 1.09001 * 109.47157 * 300.00481 * 9 7 2 24 24 H 1.00909 * 111.00129 * 303.96174 * 10 9 7 25 25 H 1.08995 * 109.47222 * 60.00508 * 11 10 9 26 26 H 1.08997 * 109.46788 * 300.00030 * 11 10 9 27 27 H 0.96705 * 114.00010 * 60.00438 * 14 12 11 28 28 H 1.08992 * 109.47280 * 300.00199 * 15 12 11 29 29 H 1.09004 * 109.47368 * 60.00217 * 16 15 12 30 30 H 1.09001 * 109.47372 * 300.00372 * 16 15 12 31 31 H 1.09002 * 109.47398 * 180.02562 * 17 16 15 32 32 H 1.09001 * 109.47194 * 300.00476 * 17 16 15 33 33 H 1.08998 * 109.47533 * 59.99948 * 18 17 16 34 34 H 1.08996 * 109.47853 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47002 * 299.99574 * 19 18 17 36 36 H 1.09000 * 109.47050 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.47045 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47375 * 59.99966 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2055 -3.6158 0.0015 11 6 1.5052 -4.9070 0.0020 12 6 2.5301 -6.0431 0.0023 13 1 3.2111 -5.9184 -0.8396 14 8 3.2720 -6.0149 1.2233 15 6 1.8047 -7.3844 -0.1228 16 6 2.8296 -8.5203 -0.1231 17 6 2.1043 -9.8616 -0.2488 18 6 1.3100 -9.8912 -1.5561 19 6 0.2850 -8.7552 -1.5559 20 6 1.0104 -7.4140 -1.4301 21 1 -0.4849 0.8401 -0.0004 22 1 0.6240 -2.5574 -0.8881 23 1 0.6246 -2.5563 0.8919 24 1 2.8399 -3.5491 -0.7804 25 1 0.8800 -4.9817 -0.8877 26 1 0.8807 -4.9813 0.8922 27 1 2.7287 -6.1205 2.0162 28 1 1.1237 -7.5091 0.7190 29 1 3.3959 -8.4991 0.8081 30 1 3.5103 -8.3954 -0.9652 31 1 2.8345 -10.6710 -0.2486 32 1 1.4233 -9.9868 0.5930 33 1 1.9908 -9.7660 -2.3980 34 1 0.7929 -10.8466 -1.6456 35 1 -0.3960 -8.8804 -0.7141 36 1 -0.2806 -8.7760 -2.4874 37 1 0.2802 -6.6047 -1.4295 38 1 1.6914 -7.2888 -2.2720 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591764375.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:36 Heat of formation + Delta-G solvation = -87.038790 kcal Electronic energy + Delta-G solvation = -16027.390301 eV Core-core repulsion = 13482.046809 eV Total energy + Delta-G solvation = -2545.343492 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -39.28405 -36.59037 -34.60226 -32.43518 -31.40897 -30.75810 -27.91249 -25.38767 -23.09020 -22.36132 -21.24681 -20.78144 -19.84645 -16.69542 -16.08418 -15.58507 -15.10892 -14.70255 -14.34422 -14.10686 -14.03363 -13.57199 -12.94367 -12.89291 -12.32731 -12.27317 -12.03748 -11.51338 -11.26213 -11.20647 -11.19018 -10.83853 -10.72142 -10.67770 -10.45507 -10.43440 -10.00688 -9.97351 -9.40999 -9.02380 -8.46018 -7.20668 -6.01510 -4.03163 3.33520 3.39308 3.44909 4.41678 4.51530 4.56712 4.67696 4.86327 5.00740 5.20897 5.21087 5.34484 5.39586 5.45684 5.46660 5.51198 5.60582 5.65759 5.80224 5.88865 5.93603 6.00456 6.07866 6.10220 6.17826 6.23420 6.33172 6.38635 6.54871 7.25332 7.42799 7.81023 8.01293 8.15352 8.42677 8.64904 9.06613 9.61838 11.09725 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.055302 B = 0.004648 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.185569 B = 6023.166376 C = 6340.261687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.682 5.682 11 C 0.026 3.974 12 C 0.116 3.884 13 H 0.091 0.909 14 O -0.549 6.549 15 C -0.116 4.116 16 C -0.109 4.109 17 C -0.119 4.119 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.118 4.118 21 H 0.261 0.739 22 H -0.016 1.016 23 H 0.026 0.974 24 H 0.328 0.672 25 H 0.028 0.972 26 H 0.063 0.937 27 H 0.369 0.631 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 -18.798 -1.986 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.312 5.312 11 C -0.104 4.104 12 C 0.056 3.944 13 H 0.108 0.892 14 O -0.353 6.353 15 C -0.136 4.136 16 C -0.146 4.146 17 C -0.157 4.157 18 C -0.157 4.157 19 C -0.156 4.156 20 C -0.155 4.155 21 H 0.070 0.930 22 H 0.002 0.998 23 H 0.044 0.956 24 H 0.144 0.856 25 H 0.046 0.954 26 H 0.082 0.918 27 H 0.215 0.785 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.044 -18.569 -1.705 18.759 hybrid contribution -0.604 0.860 -0.605 1.212 sum 1.441 -17.710 -2.310 17.918 Atomic orbital electron populations 1.69969 1.06105 1.26749 1.51113 1.24995 0.94879 0.99391 0.95360 0.86475 0.79843 0.82950 0.78020 1.20734 1.21245 1.19709 1.21209 0.93583 0.90245 1.50096 0.91912 1.19560 0.90610 0.87577 0.95562 1.60579 1.20845 1.00831 1.48931 1.22673 0.95787 0.91634 1.00297 1.21950 0.93081 0.91549 0.87815 0.89156 1.86566 1.37533 1.95953 1.15249 1.21858 0.97409 0.95755 0.98545 1.21485 0.97410 0.93367 1.02349 1.21545 0.99005 0.97494 0.97651 1.21546 0.98025 0.98180 0.97981 1.21526 0.97727 0.94767 1.01578 1.21635 0.99284 0.97381 0.97231 0.92953 0.99824 0.95584 0.85599 0.95371 0.91819 0.78503 0.91132 0.91355 0.92189 0.92334 0.92228 0.92137 0.92464 0.92115 0.92181 0.91229 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.92 9.32 -34.44 -0.32 -15.24 16 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.19 5.21 5.44 -4.98 -0.03 5.18 16 10 N -0.68 -15.10 6.44 -115.06 -0.74 -15.84 16 11 C 0.03 0.46 5.10 -3.82 -0.02 0.45 16 12 C 0.12 1.67 2.72 -26.73 -0.07 1.60 16 13 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 14 O -0.55 -8.46 12.61 -35.23 -0.44 -8.91 16 15 C -0.12 -1.34 1.96 -90.62 -0.18 -1.52 16 16 C -0.11 -1.15 5.06 -26.73 -0.14 -1.28 16 17 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 18 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 19 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 20 C -0.12 -1.31 4.86 -26.73 -0.13 -1.44 16 21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 22 H -0.02 -0.45 8.14 -51.92 -0.42 -0.88 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.33 7.03 8.72 -39.29 -0.34 6.69 16 25 H 0.03 0.49 6.17 -51.93 -0.32 0.17 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.37 4.63 9.05 45.56 0.41 5.04 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.75 7.68 -51.93 -0.40 0.35 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.85 6.32 -51.93 -0.33 0.52 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 300.80 15.07 4.53 4.53 Total: -1.00 -31.08 300.80 -8.41 -39.49 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.02 Total: 4.77 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -1.46 Total: -14.52 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.00 Total: -42.41 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.44 Total: -8.91 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.08 -8.41 -39.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591764375.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.546 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds