Wall clock time and date at job start Thu Apr 9 2020 11:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47325 * 2 1 4 4 C 1.53004 * 109.47583 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47231 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.46697 * 180.02562 * 5 4 3 7 7 C 1.48720 * 111.01831 * 74.48907 * 6 5 4 8 8 C 1.54381 * 104.51692 * 158.96284 * 7 6 5 9 9 C 1.54257 * 105.14978 * 336.27274 * 8 7 6 10 10 O 1.42906 * 110.32239 * 240.94794 * 9 8 7 11 11 C 1.50697 * 110.32628 * 118.84329 * 9 8 7 12 12 H 1.07995 * 120.00073 * 241.44522 * 11 9 8 13 13 C 1.37883 * 119.99811 * 61.45328 * 11 9 8 14 14 N 1.31514 * 119.99933 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99722 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46901 * 60.00150 * 15 13 11 17 17 H 1.48501 * 109.47188 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47596 * 299.99981 * 15 13 11 19 19 C 1.48567 * 110.99718 * 189.99889 * 6 5 4 20 20 H 1.08997 * 109.47494 * 300.00479 * 1 2 3 21 21 H 1.08997 * 109.46704 * 60.00294 * 1 2 3 22 22 H 1.09001 * 109.47265 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47494 * 239.99521 * 2 1 3 24 24 H 1.09004 * 109.47335 * 119.99581 * 2 1 3 25 25 H 1.09001 * 109.47611 * 59.99633 * 3 2 1 26 26 H 1.09002 * 109.47084 * 300.00003 * 3 2 1 27 27 H 1.09001 * 109.46812 * 59.99308 * 4 3 2 28 28 H 1.08997 * 109.46710 * 299.99867 * 4 3 2 29 29 H 1.08997 * 109.47422 * 59.99616 * 5 4 3 30 30 H 1.08999 * 109.46632 * 299.99620 * 5 4 3 31 31 H 1.09004 * 110.38960 * 40.24251 * 7 6 5 32 32 H 1.08996 * 110.50963 * 277.74694 * 7 6 5 33 33 H 1.09002 * 110.32526 * 217.32092 * 8 7 6 34 34 H 1.08998 * 110.32190 * 95.21733 * 8 7 6 35 35 H 0.96695 * 113.99929 * 298.55053 * 10 9 8 36 36 H 0.97002 * 119.99478 * 180.02562 * 14 13 11 37 37 H 1.08999 * 110.41133 * 82.17552 * 19 6 5 38 38 H 1.09001 * 110.41003 * 319.73948 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 7 5.5490 2.8849 0.0013 7 6 6.0824 2.5143 -1.3366 8 6 7.5233 3.0683 -1.3458 9 6 7.5233 4.2090 -0.3073 10 8 7.8539 5.4503 -0.9334 11 6 8.4980 3.9072 0.8017 12 1 8.1453 3.8033 1.8172 13 6 9.8401 3.7640 0.5199 14 7 10.2696 3.8912 -0.7166 15 14 11.0484 3.3907 1.8947 16 1 10.6789 2.1069 2.5433 17 1 12.4192 3.2848 1.3337 18 1 11.0075 4.4829 2.9000 19 6 6.0814 4.2508 0.2427 20 1 -0.3634 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 3.9337 0.9284 -0.8891 28 1 3.9329 0.9288 0.8909 29 1 3.7163 3.3986 0.8912 30 1 3.7171 3.3990 -0.8887 31 1 5.4906 2.9811 -2.1240 32 1 6.0909 1.4311 -1.4576 33 1 7.7738 3.4555 -2.3335 34 1 8.2297 2.2910 -1.0543 35 1 8.7331 5.4659 -1.3358 36 1 11.2137 3.7901 -0.9148 37 1 6.0878 4.4731 1.3098 38 1 5.4899 4.9902 -0.2970 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592149999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:59 Heat of formation + Delta-G solvation = -71.534869 kcal Electronic energy + Delta-G solvation = -16234.169834 eV Core-core repulsion = 13689.498643 eV Total energy + Delta-G solvation = -2544.671191 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.40954 -36.11337 -34.55241 -32.05105 -31.53074 -28.82726 -27.83927 -25.47603 -23.96770 -21.78306 -20.96927 -19.98306 -19.27744 -16.96500 -15.75002 -15.30351 -14.81855 -14.50372 -14.06243 -13.81026 -13.58500 -13.22856 -12.78086 -12.22067 -12.17350 -11.94500 -11.72933 -11.30095 -11.11160 -11.07843 -10.88277 -10.74757 -10.59419 -10.48082 -10.41008 -10.21716 -10.17427 -9.83414 -8.97449 -8.51248 -8.07531 -7.74801 -6.11361 -4.16742 3.31476 3.35113 3.39193 4.39500 4.50224 4.90382 4.95546 5.10107 5.17367 5.29925 5.46170 5.61096 5.69533 5.74531 5.77982 5.88419 5.98706 6.00390 6.02085 6.10168 6.16512 6.23246 6.25921 6.41520 6.46057 6.57650 6.58696 6.92796 7.12898 7.28753 7.62500 7.73384 7.79876 7.92015 8.27976 8.85417 9.47719 9.56625 10.96176 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042168 B = 0.005469 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.852931 B = 5118.631586 C = 5391.685619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.119 4.119 4 C -0.112 4.112 5 C 0.044 3.956 6 N -0.502 5.502 7 C 0.033 3.967 8 C -0.121 4.121 9 C 0.248 3.752 10 O -0.595 6.595 11 C -0.518 4.518 12 H 0.061 0.939 13 C 0.065 3.935 14 N -0.901 5.901 15 Si 0.899 3.101 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.053 3.947 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.382 0.618 36 H 0.265 0.735 37 H 0.075 0.925 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.776 -5.202 -0.512 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.150 4.150 5 C -0.084 4.084 6 N -0.227 5.227 7 C -0.095 4.095 8 C -0.160 4.160 9 C 0.208 3.792 10 O -0.404 6.404 11 C -0.556 4.556 12 H 0.079 0.921 13 C -0.136 4.136 14 N -0.542 5.542 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.075 4.075 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.232 0.768 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -13.046 -5.419 0.009 14.126 hybrid contribution 0.988 0.127 -0.176 1.012 sum -12.058 -5.292 -0.167 13.169 Atomic orbital electron populations 1.21781 0.96236 1.01284 1.01658 1.21525 0.95429 0.97214 1.02042 1.21594 0.95888 0.96444 1.01742 1.21525 0.93956 0.96893 1.02632 1.22261 0.89570 0.96527 1.00081 1.65313 1.05733 1.24040 1.27564 1.23184 0.97500 0.99640 0.89157 1.22848 0.93052 1.00821 0.99233 1.19262 0.89607 0.80839 0.89451 1.86083 1.39728 1.37982 1.76635 1.21619 0.91921 1.47609 0.94491 0.92057 1.25007 0.98404 0.94401 0.95758 1.69693 1.15633 1.50799 1.18074 0.86535 0.79687 0.78979 0.82073 1.20145 1.21324 1.20205 1.22972 0.96224 0.87770 1.00500 0.92855 0.92913 0.93029 0.92147 0.92002 0.92135 0.92383 0.92217 0.91240 0.91514 0.95465 0.95508 0.91691 0.93198 0.90677 0.76794 0.92469 0.90639 0.95290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.23 5.93 -26.73 -0.16 -1.39 16 3 C -0.12 -1.32 5.21 -26.73 -0.14 -1.46 16 4 C -0.11 -1.54 5.33 -26.73 -0.14 -1.68 16 5 C 0.04 0.72 4.83 -3.82 -0.02 0.70 16 6 N -0.50 -10.20 5.34 -229.83 -1.23 -11.42 16 7 C 0.03 0.67 5.93 -2.09 -0.01 0.66 16 8 C -0.12 -2.90 5.55 -25.35 -0.14 -3.04 16 9 C 0.25 6.38 1.05 -90.39 -0.10 6.28 16 10 O -0.60 -15.94 12.94 -35.23 -0.46 -16.39 16 11 C -0.52 -14.33 8.10 -34.44 -0.28 -14.61 16 12 H 0.06 1.71 7.53 -52.49 -0.40 1.31 16 13 C 0.07 1.77 5.02 -17.82 -0.09 1.68 16 14 N -0.90 -24.61 10.81 55.43 0.60 -24.01 16 15 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 C 0.05 1.20 5.74 -2.18 -0.01 1.19 16 20 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.84 7.47 -51.93 -0.39 0.45 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 30 H 0.03 0.44 7.77 -51.93 -0.40 0.03 16 31 H 0.03 0.52 7.75 -51.93 -0.40 0.11 16 32 H 0.06 1.22 7.86 -51.93 -0.41 0.81 16 33 H 0.05 1.20 7.98 -51.93 -0.41 0.78 16 34 H 0.07 1.96 7.23 -51.93 -0.38 1.58 16 35 H 0.38 10.28 7.32 45.56 0.33 10.61 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.08 1.72 7.67 -51.93 -0.40 1.32 16 38 H 0.03 0.64 7.94 -51.93 -0.41 0.23 16 LS Contribution 300.61 15.07 4.53 4.53 Total: -1.00 -27.84 300.61 -8.50 -36.33 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.20 Total: 7.34 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -0.72 Total: -12.59 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.63 Total: -35.44 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.46 Total: -16.39 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.84 -8.50 -36.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.204 kcal (2) G-P(sol) polarization free energy of solvation -27.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds