Wall clock time and date at job start Thu Apr 9 2020 11:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 N 1.46906 * 109.47441 * 299.99975 * 3 2 1 5 5 C 1.46897 * 111.00348 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47093 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99676 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00106 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99806 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00040 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47157 * 90.00124 * 10 8 6 12 12 H 1.48494 * 109.47202 * 210.00315 * 10 8 6 13 13 H 1.48505 * 109.46948 * 330.00223 * 10 8 6 14 14 C 1.53002 * 109.47392 * 240.00071 * 2 1 3 15 15 C 1.52997 * 109.46978 * 299.99957 * 14 2 1 16 16 C 1.53006 * 109.47164 * 299.99874 * 15 14 2 17 17 C 1.52997 * 109.47127 * 59.99836 * 16 15 14 18 18 C 1.52996 * 109.47473 * 119.99974 * 2 1 3 19 19 H 1.09004 * 109.47368 * 300.00213 * 18 2 1 20 20 O 1.42900 * 109.47636 * 180.02562 * 18 2 1 21 21 H 1.09004 * 109.46998 * 299.99586 * 1 2 3 22 22 H 1.09002 * 109.47722 * 60.00114 * 1 2 3 23 23 H 1.09004 * 109.46862 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47140 * 59.99892 * 3 2 1 25 25 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 26 26 H 1.00907 * 110.99530 * 56.04088 * 4 3 2 27 27 H 1.09001 * 109.46981 * 299.99935 * 5 4 3 28 28 H 1.09000 * 109.47220 * 59.99866 * 5 4 3 29 29 H 0.97003 * 119.99975 * 179.97438 * 9 8 6 30 30 H 1.09002 * 109.47097 * 59.99758 * 14 2 1 31 31 H 1.09001 * 109.47142 * 179.97438 * 14 2 1 32 32 H 1.09001 * 109.47375 * 59.99908 * 15 14 2 33 33 H 1.09000 * 109.47140 * 179.97438 * 15 14 2 34 34 H 1.08998 * 109.46505 * 299.99708 * 16 15 14 35 35 H 1.08996 * 109.46884 * 180.02562 * 16 15 14 36 36 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 37 37 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 38 38 H 0.96698 * 114.00516 * 180.02562 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5502 2.1351 -1.1995 5 6 2.0207 3.5262 -1.2331 6 6 1.4991 4.2030 -2.4744 7 1 0.8803 3.6544 -3.1691 8 6 1.8118 5.5226 -2.7233 9 7 2.5657 6.1905 -1.8776 10 14 1.1658 6.3613 -4.2623 11 1 -0.1492 6.9866 -3.9705 12 1 2.1261 7.4076 -4.6960 13 1 1.0068 5.3563 -5.3441 14 6 2.0400 -0.7212 -1.2492 15 6 1.5300 -2.1637 -1.2492 16 6 2.0401 -2.8850 0.0001 17 6 1.5301 -2.1637 1.2493 18 6 2.0400 -0.7212 1.2492 19 1 1.6767 -0.2074 2.1392 20 8 3.4690 -0.7207 1.2495 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6765 1.9563 0.8900 25 1 3.1299 1.4425 0.0005 26 1 0.5436 2.0925 -1.2559 27 1 1.6568 4.0542 -0.3517 28 1 3.1106 3.5411 -1.2414 29 1 2.7860 7.1188 -2.0529 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7208 -1.2494 32 1 0.4400 -2.1638 -1.2493 33 1 1.8930 -2.6774 -2.1394 34 1 3.1300 -2.8850 -0.0001 35 1 1.6771 -3.9127 -0.0002 36 1 1.8938 -2.6773 2.1393 37 1 0.4401 -2.1638 1.2492 38 1 3.8624 -1.1627 2.0144 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592431038.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:05 Heat of formation + Delta-G solvation = -75.609064 kcal Electronic energy + Delta-G solvation = -16616.399963 eV Core-core repulsion = 14071.552101 eV Total energy + Delta-G solvation = -2544.847862 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.82920 -35.72987 -34.75303 -32.81271 -31.17023 -29.89646 -26.97490 -26.25268 -24.03308 -22.50317 -21.39269 -20.58715 -18.13364 -16.82493 -16.46035 -15.46954 -15.08542 -14.80543 -14.44322 -13.98670 -13.35950 -13.10052 -12.76347 -12.54108 -12.39276 -12.11725 -11.93719 -11.56084 -11.33824 -11.22103 -10.94995 -10.72835 -10.65942 -10.63976 -10.27718 -10.00086 -9.93179 -9.61145 -9.47718 -9.04939 -8.42623 -7.15725 -5.97798 -3.99508 3.34803 3.40680 3.45574 4.32331 4.47022 4.74510 4.82130 4.96470 5.25294 5.28239 5.37935 5.40770 5.51655 5.55650 5.66314 5.70040 5.74734 5.88234 6.00544 6.01691 6.08593 6.25520 6.30115 6.37805 6.41385 6.58516 6.62197 6.83700 6.92457 7.36368 7.51297 7.78850 7.84985 8.20759 8.50093 8.71469 9.10300 9.65137 11.13415 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.048202 B = 0.005636 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.747893 B = 4966.824725 C = 5198.246195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C 0.073 3.927 4 N -0.687 5.687 5 C 0.194 3.806 6 C -0.512 4.512 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.898 3.102 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C -0.094 4.094 15 C -0.123 4.123 16 C -0.113 4.113 17 C -0.152 4.152 18 C 0.115 3.885 19 H 0.048 0.952 20 O -0.556 6.556 21 H 0.049 0.951 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.011 0.989 25 H 0.071 0.929 26 H 0.325 0.675 27 H -0.016 1.016 28 H 0.027 0.973 29 H 0.261 0.739 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.663 -16.880 6.729 18.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.047 4.047 3 C -0.057 4.057 4 N -0.318 5.318 5 C 0.067 3.933 6 C -0.550 4.550 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.726 3.274 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.132 4.132 15 C -0.160 4.160 16 C -0.151 4.151 17 C -0.189 4.189 18 C 0.056 3.944 19 H 0.066 0.934 20 O -0.360 6.360 21 H 0.068 0.932 22 H 0.088 0.912 23 H 0.076 0.924 24 H 0.029 0.971 25 H 0.090 0.910 26 H 0.142 0.858 27 H 0.001 0.999 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.158 -16.592 5.781 17.702 hybrid contribution -0.768 0.701 0.585 1.193 sum -2.926 -15.890 6.366 17.366 Atomic orbital electron populations 1.21988 0.94630 1.01559 1.02295 1.20497 0.94720 0.95547 0.93935 1.21842 1.00495 0.91471 0.91866 1.60701 1.14953 1.18999 1.37137 1.19529 0.96237 0.81806 0.95707 1.21204 1.31343 0.95634 1.06864 0.92030 1.24996 0.95339 0.97394 0.96920 1.69973 1.37405 1.10092 1.36361 0.86494 0.78453 0.79145 0.83276 1.20791 1.21275 1.19782 1.21376 1.01034 0.93160 0.97622 1.21633 1.00448 0.96888 0.97058 1.21423 1.01266 0.97790 0.94574 1.22273 1.01624 0.96731 0.98297 1.21791 0.80869 0.94074 0.97713 0.93412 1.86602 1.19408 1.80982 1.48987 0.93214 0.91204 0.92371 0.97064 0.91046 0.85775 0.99868 0.95488 0.92986 0.90394 0.91637 0.92241 0.92493 0.91576 0.92927 0.92409 0.90984 0.78605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 7.45 37.15 0.28 -1.69 16 2 C -0.05 -0.69 0.42 -154.51 -0.07 -0.76 16 3 C 0.07 1.40 4.50 -3.82 -0.02 1.38 16 4 N -0.69 -15.24 5.70 -115.06 -0.66 -15.89 16 5 C 0.19 5.30 5.44 -4.98 -0.03 5.27 16 6 C -0.51 -14.90 9.32 -34.44 -0.32 -15.22 16 7 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 8 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 10 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 14 C -0.09 -1.43 4.43 -26.73 -0.12 -1.55 16 15 C -0.12 -1.49 5.65 -26.73 -0.15 -1.64 16 16 C -0.11 -1.21 5.78 -26.73 -0.15 -1.37 16 17 C -0.15 -1.55 5.36 -26.73 -0.14 -1.69 16 18 C 0.11 1.45 2.73 -26.73 -0.07 1.37 16 19 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 20 O -0.56 -7.25 11.30 -35.23 -0.40 -7.65 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.07 1.00 6.57 -51.93 -0.34 0.66 16 23 H 0.06 0.66 4.81 -51.93 -0.25 0.41 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.07 1.50 7.68 -51.93 -0.40 1.10 16 26 H 0.32 6.83 6.76 -39.29 -0.27 6.57 16 27 H -0.02 -0.48 8.14 -51.93 -0.42 -0.90 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.08 1.33 7.60 -51.93 -0.39 0.93 16 31 H 0.06 1.10 7.68 -51.93 -0.40 0.70 16 32 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.75 7.68 -51.93 -0.40 0.35 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.71 6.43 -51.93 -0.33 0.38 16 38 H 0.37 3.14 9.08 45.56 0.41 3.56 16 LS Contribution 289.67 15.07 4.37 4.37 Total: -1.00 -31.40 289.67 -7.49 -38.89 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.63 Total: 4.38 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -0.89 Total: -14.37 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.08 Total: -42.70 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.40 Total: -7.65 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.40 -7.49 -38.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592431038.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.717 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds