Wall clock time and date at job start Thu Apr 9 2020 11:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 N 1.46906 * 109.47441 * 299.99975 * 3 2 1 5 5 C 1.46897 * 111.00348 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47093 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99676 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00106 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99806 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00040 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47157 * 90.00124 * 10 8 6 12 12 H 1.48494 * 109.47202 * 210.00315 * 10 8 6 13 13 H 1.48505 * 109.46948 * 330.00223 * 10 8 6 14 14 C 1.53002 * 109.47392 * 240.00071 * 2 1 3 15 15 C 1.52997 * 109.46978 * 299.99957 * 14 2 1 16 16 C 1.53006 * 109.47164 * 299.99874 * 15 14 2 17 17 C 1.52997 * 109.47127 * 59.99836 * 16 15 14 18 18 C 1.52996 * 109.47473 * 119.99974 * 2 1 3 19 19 H 1.09004 * 109.47368 * 300.00213 * 18 2 1 20 20 O 1.42900 * 109.47636 * 180.02562 * 18 2 1 21 21 H 1.09004 * 109.46998 * 299.99586 * 1 2 3 22 22 H 1.09002 * 109.47722 * 60.00114 * 1 2 3 23 23 H 1.09004 * 109.46862 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47140 * 59.99892 * 3 2 1 25 25 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 26 26 H 1.00907 * 110.99530 * 56.04088 * 4 3 2 27 27 H 1.09001 * 109.46981 * 299.99935 * 5 4 3 28 28 H 1.09000 * 109.47220 * 59.99866 * 5 4 3 29 29 H 0.97003 * 119.99975 * 179.97438 * 9 8 6 30 30 H 1.09002 * 109.47097 * 59.99758 * 14 2 1 31 31 H 1.09001 * 109.47142 * 179.97438 * 14 2 1 32 32 H 1.09001 * 109.47375 * 59.99908 * 15 14 2 33 33 H 1.09000 * 109.47140 * 179.97438 * 15 14 2 34 34 H 1.08998 * 109.46505 * 299.99708 * 16 15 14 35 35 H 1.08996 * 109.46884 * 180.02562 * 16 15 14 36 36 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 37 37 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 38 38 H 0.96698 * 114.00516 * 180.02562 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5502 2.1351 -1.1995 5 6 2.0207 3.5262 -1.2331 6 6 1.4991 4.2030 -2.4744 7 1 0.8803 3.6544 -3.1691 8 6 1.8118 5.5226 -2.7233 9 7 2.5657 6.1905 -1.8776 10 14 1.1658 6.3613 -4.2623 11 1 -0.1492 6.9866 -3.9705 12 1 2.1261 7.4076 -4.6960 13 1 1.0068 5.3563 -5.3441 14 6 2.0400 -0.7212 -1.2492 15 6 1.5300 -2.1637 -1.2492 16 6 2.0401 -2.8850 0.0001 17 6 1.5301 -2.1637 1.2493 18 6 2.0400 -0.7212 1.2492 19 1 1.6767 -0.2074 2.1392 20 8 3.4690 -0.7207 1.2495 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6765 1.9563 0.8900 25 1 3.1299 1.4425 0.0005 26 1 0.5436 2.0925 -1.2559 27 1 1.6568 4.0542 -0.3517 28 1 3.1106 3.5411 -1.2414 29 1 2.7860 7.1188 -2.0529 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7208 -1.2494 32 1 0.4400 -2.1638 -1.2493 33 1 1.8930 -2.6774 -2.1394 34 1 3.1300 -2.8850 -0.0001 35 1 1.6771 -3.9127 -0.0002 36 1 1.8938 -2.6773 2.1393 37 1 0.4401 -2.1638 1.2492 38 1 3.8624 -1.1627 2.0144 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592431038.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:03 Heat of formation + Delta-G solvation = -98.635838 kcal Electronic energy + Delta-G solvation = -16617.398479 eV Core-core repulsion = 14071.552101 eV Total energy + Delta-G solvation = -2545.846378 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93548 -37.24259 -36.02870 -34.73341 -32.74454 -30.88892 -28.88768 -27.47792 -25.65513 -23.83012 -23.08222 -21.80325 -19.29857 -18.57664 -17.80112 -17.02360 -16.43381 -16.22204 -16.03185 -15.26856 -14.83897 -14.72790 -14.16473 -13.88972 -13.61370 -13.48421 -13.31352 -13.06902 -12.78590 -12.65688 -12.46398 -12.32165 -12.22111 -11.97568 -11.74456 -11.53043 -11.30330 -11.03890 -10.71090 -10.64915 -10.47921 -9.08825 -8.23436 -6.35564 1.40138 1.42835 1.54725 2.39526 3.09469 3.37757 3.51901 3.86170 3.93069 3.97639 4.18884 4.30337 4.42268 4.47086 4.58019 4.68945 4.72946 4.78809 4.87680 4.97674 5.04329 5.07868 5.11936 5.16577 5.24130 5.28700 5.36696 5.38379 5.48384 5.59985 5.64154 5.73538 6.00968 6.44760 6.72874 6.89475 7.02564 7.35749 8.88628 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.048202 B = 0.005636 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.747893 B = 4966.824725 C = 5198.246195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C 0.076 3.924 4 N -0.681 5.681 5 C 0.209 3.791 6 C -0.535 4.535 7 H 0.066 0.934 8 C -0.001 4.001 9 N -0.936 5.936 10 Si 0.978 3.022 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.264 1.264 14 C -0.091 4.091 15 C -0.118 4.118 16 C -0.111 4.111 17 C -0.144 4.144 18 C 0.115 3.885 19 H 0.052 0.948 20 O -0.579 6.579 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.086 0.914 24 H 0.006 0.994 25 H 0.045 0.955 26 H 0.334 0.666 27 H -0.043 1.043 28 H -0.008 1.008 29 H 0.265 0.735 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.188 -18.524 6.580 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.044 4.044 3 C -0.053 4.053 4 N -0.312 5.312 5 C 0.081 3.919 6 C -0.573 4.573 7 H 0.084 0.916 8 C -0.199 4.199 9 N -0.577 5.577 10 Si 0.801 3.199 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.188 1.188 14 C -0.129 4.129 15 C -0.155 4.155 16 C -0.148 4.148 17 C -0.181 4.181 18 C 0.055 3.945 19 H 0.070 0.930 20 O -0.386 6.386 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.104 0.896 24 H 0.024 0.976 25 H 0.063 0.937 26 H 0.153 0.847 27 H -0.026 1.026 28 H 0.010 0.990 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.689 -18.270 5.653 19.477 hybrid contribution -0.218 1.209 0.678 1.403 sum -3.907 -17.061 6.331 18.612 Atomic orbital electron populations 1.21966 0.92948 1.03283 1.01917 1.20486 0.96061 0.92402 0.95486 1.21867 0.98971 0.94320 0.90190 1.60568 1.15588 1.16002 1.39082 1.19179 0.93967 0.84312 0.94458 1.21539 1.31888 0.96433 1.07467 0.91587 1.26024 0.95229 0.98057 1.00597 1.70112 1.38400 1.10637 1.38512 0.85263 0.78111 0.77899 0.78585 1.19429 1.20688 1.18799 1.21281 0.99429 0.95507 0.96640 1.21602 1.01109 0.94469 0.98369 1.21417 1.00742 0.98842 0.93832 1.22230 1.02223 0.94578 0.99077 1.21772 0.80808 0.95740 0.96142 0.92979 1.86565 1.19903 1.81667 1.50492 0.92633 0.92569 0.89557 0.97574 0.93651 0.84699 1.02578 0.98984 0.92590 0.92945 0.94138 0.90965 0.92099 0.92560 0.90607 0.89979 0.89808 0.76347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 7.45 71.98 0.54 -3.05 16 2 C -0.04 -1.29 0.42 -52.19 -0.02 -1.31 16 3 C 0.08 3.03 4.50 86.30 0.39 3.42 16 4 N -0.68 -31.43 5.70 -517.93 -2.95 -34.38 16 5 C 0.21 11.98 5.44 85.56 0.47 12.45 16 6 C -0.54 -31.83 9.32 25.60 0.24 -31.59 16 7 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 8 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 9 N -0.94 -58.61 13.29 21.45 0.28 -58.33 16 10 Si 0.98 45.39 29.54 68.60 2.03 47.42 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 13 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 14 C -0.09 -2.76 4.43 30.59 0.14 -2.63 16 15 C -0.12 -2.62 5.65 30.60 0.17 -2.44 16 16 C -0.11 -2.03 5.78 30.60 0.18 -1.85 16 17 C -0.14 -2.42 5.36 30.59 0.16 -2.25 16 18 C 0.11 2.70 2.73 30.59 0.08 2.78 16 19 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 20 O -0.58 -14.74 11.30 -148.98 -1.68 -16.43 16 21 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.06 1.55 6.57 -2.39 -0.02 1.53 16 23 H 0.09 1.67 4.81 -2.38 -0.01 1.66 16 24 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 25 H 0.04 2.02 7.68 -2.39 -0.02 2.00 16 26 H 0.33 14.39 6.76 -89.69 -0.61 13.79 16 27 H -0.04 -2.67 8.14 -2.39 -0.02 -2.69 16 28 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.05 1.82 7.60 -2.39 -0.02 1.81 16 31 H 0.04 1.40 7.68 -2.39 -0.02 1.39 16 32 H 0.07 1.43 6.43 -2.39 -0.02 1.41 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.16 7.68 -2.39 -0.02 1.14 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.26 6.43 -2.39 -0.02 1.24 16 38 H 0.39 6.09 9.08 -74.06 -0.67 5.41 16 Total: -1.00 -69.61 289.67 0.24 -69.37 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -0.24 Total: 18.43 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 2.80 Total: -26.08 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -2.67 Total: -92.71 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -1.68 Total: -16.43 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -69.61 0.24 -69.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592431038.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.268 kcal (2) G-P(sol) polarization free energy of solvation -69.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds