Wall clock time and date at job start Thu Apr 9 2020 11:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 N 1.46902 * 109.46821 * 60.00061 * 3 2 1 5 5 C 1.46894 * 110.99722 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47152 * 180.02562 * 5 4 3 7 7 H 1.08002 * 120.00096 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00202 * 180.02562 * 6 5 4 9 9 N 1.31507 * 119.99971 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00036 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47090 * 60.00102 * 10 8 6 12 12 H 1.48501 * 109.47294 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47405 * 300.00107 * 10 8 6 14 14 C 1.52999 * 109.46997 * 120.00398 * 2 1 3 15 15 C 1.52997 * 109.47317 * 60.00177 * 14 2 1 16 16 C 1.53000 * 109.47060 * 59.99960 * 15 14 2 17 17 C 1.53002 * 109.47233 * 299.99657 * 16 15 14 18 18 C 1.52997 * 109.46817 * 60.00194 * 17 16 15 19 19 H 1.09001 * 109.47289 * 180.02562 * 18 17 16 20 20 O 1.42895 * 109.47269 * 60.00152 * 18 17 16 21 21 H 1.09000 * 109.46866 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47261 * 299.99422 * 1 2 3 23 23 H 1.09001 * 109.47377 * 59.99963 * 1 2 3 24 24 H 1.09002 * 109.46838 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47142 * 300.00180 * 3 2 1 26 26 H 1.00905 * 110.99656 * 56.04434 * 4 3 2 27 27 H 1.08994 * 109.47701 * 300.00624 * 5 4 3 28 28 H 1.09005 * 109.47301 * 60.00536 * 5 4 3 29 29 H 0.96999 * 120.00372 * 179.97438 * 9 8 6 30 30 H 1.08996 * 109.46929 * 299.99280 * 14 2 1 31 31 H 1.09002 * 109.46716 * 180.02562 * 14 2 1 32 32 H 1.09002 * 109.47153 * 299.99641 * 15 14 2 33 33 H 1.09001 * 109.46832 * 179.97438 * 15 14 2 34 34 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 35 35 H 1.09004 * 109.46724 * 180.02562 * 16 15 14 36 36 H 1.08993 * 109.47662 * 180.02562 * 17 16 15 37 37 H 1.09002 * 109.47075 * 300.00932 * 17 16 15 38 38 H 0.96698 * 114.00157 * 60.00102 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5503 2.1350 1.1995 5 6 2.0217 3.5258 1.2337 6 6 1.5011 4.2022 2.4757 7 1 0.8823 3.6536 3.1703 8 6 1.8148 5.5215 2.7252 9 7 2.5679 6.1896 1.8791 10 14 1.1689 6.3601 4.2643 11 1 1.6640 5.6403 5.4651 12 1 1.6455 7.7661 4.2991 13 1 -0.3159 6.3405 4.2527 14 6 2.0400 -0.7213 1.2492 15 6 1.5301 -2.1638 1.2491 16 6 2.0401 -2.8850 -0.0002 17 6 1.5301 -2.1637 -1.2494 18 6 2.0400 -0.7212 -1.2493 19 1 1.6763 -0.2072 -2.1391 20 8 3.4690 -0.7212 -1.2494 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.8198 1.6413 2.0373 27 1 3.1115 3.5400 1.2424 28 1 1.6585 4.0544 0.3523 29 1 2.7883 7.1178 2.0544 30 1 1.6768 -0.2075 2.1391 31 1 3.1300 -0.7209 1.2494 32 1 0.4401 -2.1639 1.2491 33 1 1.8938 -2.6778 2.1389 34 1 3.1301 -2.8849 -0.0002 35 1 1.6764 -3.9125 -0.0004 36 1 1.8930 -2.6777 -2.1394 37 1 0.4401 -2.1637 -1.2493 38 1 3.8623 -1.1628 -2.0144 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592431040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:09 Heat of formation + Delta-G solvation = -75.758515 kcal Electronic energy + Delta-G solvation = -16620.399479 eV Core-core repulsion = 14075.545136 eV Total energy + Delta-G solvation = -2544.854342 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.85415 -35.72043 -34.74888 -32.80697 -31.20181 -29.96061 -26.95688 -26.07992 -24.11727 -22.62298 -21.33316 -20.63416 -18.12215 -16.83309 -16.45728 -15.51266 -15.11651 -14.59022 -14.51088 -14.18714 -13.24204 -13.10528 -12.85713 -12.66904 -12.25696 -12.06055 -11.80014 -11.54444 -11.33464 -11.19876 -11.02976 -10.83616 -10.70972 -10.60289 -10.27806 -10.01110 -9.92649 -9.66593 -9.49588 -9.05284 -8.41812 -7.14731 -5.97406 -3.99215 3.36952 3.40427 3.43691 4.32927 4.47171 4.73122 4.79563 4.93632 5.20804 5.27919 5.38202 5.39314 5.51215 5.54861 5.67267 5.74687 5.77884 5.87039 5.98143 6.08030 6.09076 6.22662 6.28600 6.42560 6.45584 6.51241 6.64840 6.74578 6.83876 7.36135 7.52310 7.77151 7.84869 8.20951 8.50025 8.71533 9.10328 9.65334 11.13770 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.048286 B = 0.005638 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.738215 B = 4965.250504 C = 5198.048901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.046 4.046 3 C 0.072 3.928 4 N -0.688 5.688 5 C 0.194 3.806 6 C -0.513 4.513 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.899 3.101 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C -0.107 4.107 15 C -0.119 4.119 16 C -0.113 4.113 17 C -0.152 4.152 18 C 0.114 3.886 19 H 0.051 0.949 20 O -0.558 6.558 21 H 0.048 0.952 22 H 0.077 0.923 23 H 0.048 0.952 24 H 0.026 0.974 25 H 0.058 0.942 26 H 0.327 0.673 27 H -0.015 1.015 28 H 0.026 0.974 29 H 0.261 0.739 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.437 -17.343 -5.997 18.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.047 4.047 3 C -0.058 4.058 4 N -0.319 5.319 5 C 0.067 3.933 6 C -0.551 4.551 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.727 3.273 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.145 4.145 15 C -0.157 4.157 16 C -0.150 4.150 17 C -0.190 4.190 18 C 0.055 3.945 19 H 0.069 0.931 20 O -0.362 6.362 21 H 0.066 0.934 22 H 0.096 0.904 23 H 0.067 0.933 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.144 0.856 27 H 0.002 0.998 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.062 -16.650 -5.744 17.733 hybrid contribution 0.740 0.173 0.352 0.838 sum -1.321 -16.477 -5.393 17.387 Atomic orbital electron populations 1.21831 0.93531 1.00397 1.03296 1.20514 0.95798 0.95040 0.93305 1.21816 0.96818 0.91742 0.95392 1.60727 1.63488 1.04839 1.02883 1.19519 0.93055 0.83121 0.97575 1.21166 1.31153 0.96229 1.06583 0.92093 1.24992 0.95282 0.97391 0.96944 1.69957 1.37425 1.10149 1.36305 0.86552 0.79267 0.78269 0.83235 1.20307 1.21380 1.20193 1.21522 1.00925 0.94443 0.97577 1.21564 1.00733 0.96175 0.97195 1.21418 1.01187 0.97883 0.94543 1.22275 1.01799 0.96693 0.98195 1.21815 0.80674 0.94093 0.97932 0.93138 1.86590 1.19588 1.81055 1.48994 0.93359 0.90406 0.93256 0.95559 0.92387 0.85605 0.99758 0.95624 0.92926 0.91331 0.91663 0.91871 0.92473 0.91635 0.92796 0.92386 0.90808 0.78592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 7.62 37.16 0.28 -1.60 16 2 C -0.05 -0.69 0.42 -154.50 -0.07 -0.75 16 3 C 0.07 1.38 4.50 -3.82 -0.02 1.37 16 4 N -0.69 -15.28 5.70 -115.06 -0.66 -15.94 16 5 C 0.19 5.31 5.44 -4.98 -0.03 5.28 16 6 C -0.51 -14.94 9.32 -34.44 -0.32 -15.26 16 7 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 10 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 14 C -0.11 -1.54 4.26 -26.73 -0.11 -1.66 16 15 C -0.12 -1.40 5.65 -26.73 -0.15 -1.55 16 16 C -0.11 -1.18 5.78 -26.73 -0.15 -1.34 16 17 C -0.15 -1.55 5.36 -26.73 -0.14 -1.69 16 18 C 0.11 1.43 2.73 -26.73 -0.07 1.36 16 19 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 20 O -0.56 -7.21 11.30 -35.23 -0.40 -7.61 16 21 H 0.05 0.58 4.81 -51.93 -0.25 0.33 16 22 H 0.08 1.25 7.60 -51.93 -0.39 0.85 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.03 0.54 7.68 -51.93 -0.40 0.14 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.33 7.00 6.76 -39.29 -0.27 6.74 16 27 H -0.02 -0.45 8.14 -51.93 -0.42 -0.87 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.07 1.05 6.57 -51.93 -0.34 0.71 16 31 H 0.06 1.02 7.68 -51.93 -0.40 0.63 16 32 H 0.06 0.72 6.43 -51.93 -0.33 0.38 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.74 6.43 -51.93 -0.33 0.40 16 38 H 0.37 3.12 9.08 45.56 0.41 3.54 16 LS Contribution 289.67 15.07 4.37 4.37 Total: -1.00 -31.32 289.67 -7.48 -38.81 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.63 Total: 4.42 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -0.88 Total: -14.32 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.08 Total: -42.76 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.40 Total: -7.61 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.32 -7.48 -38.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592431040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.952 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds