Wall clock time and date at job start Thu Apr 9 2020 11:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 N 1.46902 * 109.46821 * 60.00061 * 3 2 1 5 5 C 1.46894 * 110.99722 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47152 * 180.02562 * 5 4 3 7 7 H 1.08002 * 120.00096 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00202 * 180.02562 * 6 5 4 9 9 N 1.31507 * 119.99971 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00036 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47090 * 60.00102 * 10 8 6 12 12 H 1.48501 * 109.47294 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47405 * 300.00107 * 10 8 6 14 14 C 1.52999 * 109.46997 * 120.00398 * 2 1 3 15 15 C 1.52997 * 109.47317 * 60.00177 * 14 2 1 16 16 C 1.53000 * 109.47060 * 59.99960 * 15 14 2 17 17 C 1.53002 * 109.47233 * 299.99657 * 16 15 14 18 18 C 1.52997 * 109.46817 * 60.00194 * 17 16 15 19 19 H 1.09001 * 109.47289 * 180.02562 * 18 17 16 20 20 O 1.42895 * 109.47269 * 60.00152 * 18 17 16 21 21 H 1.09000 * 109.46866 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47261 * 299.99422 * 1 2 3 23 23 H 1.09001 * 109.47377 * 59.99963 * 1 2 3 24 24 H 1.09002 * 109.46838 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47142 * 300.00180 * 3 2 1 26 26 H 1.00905 * 110.99656 * 56.04434 * 4 3 2 27 27 H 1.08994 * 109.47701 * 300.00624 * 5 4 3 28 28 H 1.09005 * 109.47301 * 60.00536 * 5 4 3 29 29 H 0.96999 * 120.00372 * 179.97438 * 9 8 6 30 30 H 1.08996 * 109.46929 * 299.99280 * 14 2 1 31 31 H 1.09002 * 109.46716 * 180.02562 * 14 2 1 32 32 H 1.09002 * 109.47153 * 299.99641 * 15 14 2 33 33 H 1.09001 * 109.46832 * 179.97438 * 15 14 2 34 34 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 35 35 H 1.09004 * 109.46724 * 180.02562 * 16 15 14 36 36 H 1.08993 * 109.47662 * 180.02562 * 17 16 15 37 37 H 1.09002 * 109.47075 * 300.00932 * 17 16 15 38 38 H 0.96698 * 114.00157 * 60.00102 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5503 2.1350 1.1995 5 6 2.0217 3.5258 1.2337 6 6 1.5011 4.2022 2.4757 7 1 0.8823 3.6536 3.1703 8 6 1.8148 5.5215 2.7252 9 7 2.5679 6.1896 1.8791 10 14 1.1689 6.3601 4.2643 11 1 1.6640 5.6403 5.4651 12 1 1.6455 7.7661 4.2991 13 1 -0.3159 6.3405 4.2527 14 6 2.0400 -0.7213 1.2492 15 6 1.5301 -2.1638 1.2491 16 6 2.0401 -2.8850 -0.0002 17 6 1.5301 -2.1637 -1.2494 18 6 2.0400 -0.7212 -1.2493 19 1 1.6763 -0.2072 -2.1391 20 8 3.4690 -0.7212 -1.2494 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.8198 1.6413 2.0373 27 1 3.1115 3.5400 1.2424 28 1 1.6585 4.0544 0.3523 29 1 2.7883 7.1178 2.0544 30 1 1.6768 -0.2075 2.1391 31 1 3.1300 -0.7209 1.2494 32 1 0.4401 -2.1639 1.2491 33 1 1.8938 -2.6778 2.1389 34 1 3.1301 -2.8849 -0.0002 35 1 1.6764 -3.9125 -0.0004 36 1 1.8930 -2.6777 -2.1394 37 1 0.4401 -2.1637 -1.2493 38 1 3.8623 -1.1628 -2.0144 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592431040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:09 Heat of formation + Delta-G solvation = -98.624141 kcal Electronic energy + Delta-G solvation = -16621.391007 eV Core-core repulsion = 14075.545136 eV Total energy + Delta-G solvation = -2545.845870 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.95553 -37.22090 -36.03202 -34.71959 -32.77642 -30.93636 -28.90518 -27.28621 -25.73183 -23.99276 -22.97211 -21.84921 -19.27952 -18.56797 -17.80364 -17.00132 -16.48539 -16.27357 -15.86664 -15.54406 -14.78899 -14.53512 -14.21273 -13.93478 -13.74897 -13.42153 -13.29602 -12.86360 -12.76391 -12.71431 -12.48886 -12.35993 -12.22768 -11.95067 -11.84151 -11.49904 -11.35467 -11.03406 -10.69409 -10.66558 -10.49917 -9.10071 -8.23209 -6.35457 1.40295 1.44772 1.52805 2.39607 3.09590 3.38505 3.52068 3.79524 3.88796 4.00005 4.20215 4.30631 4.44944 4.47876 4.57032 4.66080 4.71859 4.79211 4.88288 4.98265 5.02592 5.09683 5.14472 5.18007 5.25417 5.28170 5.33359 5.37882 5.49727 5.56200 5.60383 5.71087 6.00565 6.43495 6.70743 6.87299 7.00943 7.35698 8.88649 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.048286 B = 0.005638 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.738215 B = 4965.250504 C = 5198.048901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.043 4.043 3 C 0.075 3.925 4 N -0.678 5.678 5 C 0.208 3.792 6 C -0.536 4.536 7 H 0.066 0.934 8 C -0.001 4.001 9 N -0.936 5.936 10 Si 0.978 3.022 11 H -0.266 1.266 12 H -0.282 1.282 13 H -0.266 1.266 14 C -0.105 4.105 15 C -0.116 4.116 16 C -0.111 4.111 17 C -0.144 4.144 18 C 0.114 3.886 19 H 0.052 0.948 20 O -0.579 6.579 21 H 0.078 0.922 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.006 0.994 25 H 0.047 0.953 26 H 0.332 0.668 27 H -0.048 1.048 28 H -0.003 1.003 29 H 0.266 0.734 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.585 -19.085 -5.602 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.044 4.044 3 C -0.055 4.055 4 N -0.310 5.310 5 C 0.080 3.920 6 C -0.575 4.575 7 H 0.084 0.916 8 C -0.199 4.199 9 N -0.576 5.576 10 Si 0.801 3.199 11 H -0.190 1.190 12 H -0.207 1.207 13 H -0.191 1.191 14 C -0.143 4.143 15 C -0.153 4.153 16 C -0.148 4.148 17 C -0.182 4.182 18 C 0.055 3.945 19 H 0.070 0.930 20 O -0.387 6.387 21 H 0.096 0.904 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.024 0.976 25 H 0.065 0.935 26 H 0.150 0.850 27 H -0.030 1.030 28 H 0.015 0.985 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.208 -18.429 -5.367 19.460 hybrid contribution 1.161 0.712 0.171 1.372 sum -2.047 -17.717 -5.196 18.576 Atomic orbital electron populations 1.21779 0.92599 1.01998 1.02163 1.20491 0.96499 0.92064 0.95305 1.21872 0.95607 0.94553 0.93426 1.60632 1.63051 1.02868 1.04400 1.19184 0.90865 0.85785 0.96119 1.21510 1.31688 0.97051 1.07209 0.91588 1.26021 0.95161 0.98041 1.00642 1.70100 1.38415 1.10654 1.38461 0.85320 0.78905 0.77038 0.78622 1.19044 1.20699 1.19108 1.21469 0.99740 0.96542 0.96515 1.21552 1.01181 0.94005 0.98547 1.21418 1.00771 0.98878 0.93755 1.22232 1.02219 0.94583 0.99154 1.21769 0.80709 0.95729 0.96262 0.92972 1.86547 1.19917 1.81736 1.50484 0.90353 0.92622 0.93308 0.97590 0.93451 0.84978 1.02990 0.98538 0.92579 0.92971 0.93504 0.90975 0.91715 0.92415 0.90553 0.89980 0.89933 0.76323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 7.62 71.98 0.55 -2.92 16 2 C -0.04 -1.27 0.42 -52.18 -0.02 -1.29 16 3 C 0.08 2.99 4.50 86.30 0.39 3.38 16 4 N -0.68 -31.34 5.70 -517.94 -2.95 -34.29 16 5 C 0.21 11.97 5.44 85.56 0.47 12.43 16 6 C -0.54 -31.92 9.32 25.60 0.24 -31.68 16 7 H 0.07 3.78 7.81 -2.91 -0.02 3.75 16 8 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 9 N -0.94 -58.61 13.29 21.45 0.28 -58.33 16 10 Si 0.98 45.37 29.54 68.60 2.03 47.40 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 14 C -0.10 -2.99 4.26 30.59 0.13 -2.86 16 15 C -0.12 -2.44 5.65 30.59 0.17 -2.27 16 16 C -0.11 -1.96 5.78 30.60 0.18 -1.79 16 17 C -0.14 -2.44 5.36 30.59 0.16 -2.28 16 18 C 0.11 2.70 2.73 30.60 0.08 2.79 16 19 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 20 O -0.58 -14.47 11.30 -148.98 -1.68 -16.15 16 21 H 0.08 1.65 4.81 -2.39 -0.01 1.64 16 22 H 0.05 1.75 7.60 -2.39 -0.02 1.74 16 23 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.01 0.26 7.68 -2.39 -0.02 0.24 16 25 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.33 14.77 6.76 -89.69 -0.61 14.16 16 27 H -0.05 -2.97 8.14 -2.39 -0.02 -2.99 16 28 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 29 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.05 1.62 6.57 -2.39 -0.02 1.61 16 31 H 0.05 1.49 7.68 -2.39 -0.02 1.47 16 32 H 0.07 1.41 6.43 -2.39 -0.02 1.39 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.13 7.68 -2.39 -0.02 1.12 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.29 6.43 -2.39 -0.02 1.28 16 38 H 0.39 5.97 9.08 -74.06 -0.67 5.29 16 Total: -1.00 -68.94 289.67 0.25 -68.69 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -0.24 Total: 18.75 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 2.81 Total: -26.07 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -2.67 Total: -92.62 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -1.68 Total: -16.15 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -68.94 0.25 -68.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592431040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.931 kcal (2) G-P(sol) polarization free energy of solvation -68.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds