Wall clock time and date at job start Thu Apr 9 2020 11:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47206 * 2 1 4 4 N 1.46905 * 109.47039 * 299.99787 * 3 2 1 5 5 C 1.46901 * 110.99870 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00162 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00023 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99532 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00003 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47381 * 359.97438 * 10 8 6 12 12 H 1.48508 * 109.47001 * 119.99934 * 10 8 6 13 13 H 1.48497 * 109.47392 * 239.99632 * 10 8 6 14 14 C 1.53001 * 109.47190 * 239.99661 * 2 1 3 15 15 C 1.53006 * 109.47223 * 300.00454 * 14 2 1 16 16 C 1.53002 * 109.46762 * 299.99799 * 15 14 2 17 17 C 1.53001 * 109.47087 * 60.00118 * 16 15 14 18 18 C 1.52993 * 109.47323 * 299.99786 * 17 16 15 19 19 H 1.09001 * 109.47393 * 300.00326 * 18 17 16 20 20 O 1.42904 * 109.47213 * 180.02562 * 18 17 16 21 21 H 1.08999 * 109.47049 * 60.00315 * 1 2 3 22 22 H 1.09005 * 109.47151 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47171 * 300.00432 * 1 2 3 24 24 H 1.09001 * 109.47393 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.47408 * 59.99713 * 3 2 1 26 26 H 1.00901 * 110.99869 * 56.04956 * 4 3 2 27 27 H 1.09004 * 109.47031 * 299.99620 * 5 4 3 28 28 H 1.08995 * 109.47111 * 59.99900 * 5 4 3 29 29 H 0.97001 * 119.99132 * 180.02562 * 9 8 6 30 30 H 1.08999 * 109.47105 * 60.00059 * 14 2 1 31 31 H 1.08991 * 109.46963 * 180.02562 * 14 2 1 32 32 H 1.09002 * 109.47071 * 59.99643 * 15 14 2 33 33 H 1.08998 * 109.47309 * 180.02562 * 15 14 2 34 34 H 1.08996 * 109.46732 * 180.02562 * 16 15 14 35 35 H 1.09001 * 109.47640 * 300.00068 * 16 15 14 36 36 H 1.09001 * 109.47152 * 60.00259 * 17 16 15 37 37 H 1.09000 * 109.46969 * 179.97438 * 17 16 15 38 38 H 0.96695 * 114.00314 * 59.99886 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.5504 2.1349 -1.1995 5 6 2.0219 3.5258 -1.2337 6 6 1.5003 4.2026 -2.4751 7 1 0.8809 3.6542 -3.1693 8 6 1.8148 5.5216 -2.7250 9 7 2.5695 6.1891 -1.8798 10 14 1.1688 6.3603 -4.2640 11 1 0.3499 5.3988 -5.0451 12 1 0.3322 7.5252 -3.8788 13 1 2.3113 6.8236 -5.0919 14 6 2.0400 -0.7213 -1.2492 15 6 1.5299 -2.1639 -1.2492 16 6 2.0399 -2.8851 0.0001 17 6 1.5299 -2.1637 1.2493 18 6 2.0399 -0.7213 1.2493 19 1 3.1299 -0.7213 1.2493 20 8 1.5640 -0.0478 2.4164 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 0.8899 26 1 0.5438 2.0925 -1.2559 27 1 1.6587 4.0543 -0.3523 28 1 3.1117 3.5398 -1.2425 29 1 2.7904 7.1171 -2.0555 30 1 1.6767 -0.2075 -2.1392 31 1 3.1299 -0.7217 -1.2489 32 1 0.4399 -2.1638 -1.2492 33 1 1.8936 -2.6779 -2.1389 34 1 1.6769 -3.9128 -0.0001 35 1 3.1299 -2.8851 0.0002 36 1 0.4399 -2.1638 1.2493 37 1 1.8929 -2.6778 2.1393 38 1 1.8496 -0.4514 3.2474 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592431041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:10 Heat of formation + Delta-G solvation = -99.920965 kcal Electronic energy + Delta-G solvation = -16571.089683 eV Core-core repulsion = 14025.187579 eV Total energy + Delta-G solvation = -2545.902105 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.90323 -37.18214 -36.37166 -34.75850 -32.69522 -30.57928 -28.88264 -27.75575 -25.65348 -23.84330 -23.00471 -21.74485 -19.34371 -18.58351 -18.11363 -17.04258 -16.36440 -16.26996 -15.65242 -15.33777 -14.78163 -14.62431 -14.42134 -13.99243 -13.77262 -13.64172 -13.25610 -12.97308 -12.79482 -12.70157 -12.54885 -12.28161 -12.03894 -11.99996 -11.79750 -11.42551 -11.18074 -11.15334 -10.87249 -10.67656 -10.52550 -9.09702 -8.23675 -6.35597 1.40393 1.41570 1.55814 2.39485 3.09384 3.35986 3.51014 3.73041 3.89909 4.09115 4.16537 4.35683 4.38589 4.46260 4.49210 4.56252 4.69875 4.83099 4.87548 5.00540 5.05665 5.09121 5.11452 5.18398 5.24099 5.27162 5.29810 5.35913 5.47488 5.58779 5.61618 5.69140 6.00578 6.43398 6.71077 6.87685 6.98668 7.35662 8.88665 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045234 B = 0.005687 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.854076 B = 4921.981267 C = 5241.556577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.043 4.043 3 C 0.075 3.925 4 N -0.679 5.679 5 C 0.208 3.792 6 C -0.534 4.534 7 H 0.066 0.934 8 C -0.002 4.002 9 N -0.937 5.937 10 Si 0.978 3.022 11 H -0.261 1.261 12 H -0.277 1.277 13 H -0.277 1.277 14 C -0.098 4.098 15 C -0.120 4.120 16 C -0.114 4.114 17 C -0.143 4.143 18 C 0.115 3.885 19 H 0.050 0.950 20 O -0.582 6.582 21 H 0.048 0.952 22 H 0.079 0.921 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.007 0.993 26 H 0.333 0.667 27 H -0.047 1.047 28 H -0.004 1.004 29 H 0.265 0.735 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 -19.125 5.481 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.043 4.043 3 C -0.055 4.055 4 N -0.310 5.310 5 C 0.080 3.920 6 C -0.572 4.572 7 H 0.084 0.916 8 C -0.199 4.199 9 N -0.577 5.577 10 Si 0.802 3.198 11 H -0.185 1.185 12 H -0.203 1.203 13 H -0.203 1.203 14 C -0.135 4.135 15 C -0.158 4.158 16 C -0.151 4.151 17 C -0.180 4.180 18 C 0.056 3.944 19 H 0.068 0.932 20 O -0.390 6.390 21 H 0.067 0.933 22 H 0.097 0.903 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.026 0.974 26 H 0.151 0.849 27 H -0.029 1.029 28 H 0.014 0.986 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.176 -18.811 4.664 19.502 hybrid contribution -0.153 1.174 0.662 1.357 sum -2.329 -17.636 5.326 18.570 Atomic orbital electron populations 1.21840 0.94104 1.02456 1.00828 1.20491 0.96547 0.92675 0.94617 1.21866 0.98478 0.94681 0.90443 1.60617 1.15560 1.16022 1.38796 1.19196 0.94136 0.84332 0.94349 1.21566 1.31752 0.96497 1.07377 0.91579 1.26027 0.95255 0.98052 1.00608 1.70121 1.38470 1.10665 1.38432 0.85212 0.78173 0.78116 0.78332 1.18476 1.20253 1.20260 1.21420 0.99876 0.95662 0.96571 1.21634 1.01221 0.94304 0.98598 1.21486 1.00914 0.99331 0.93368 1.22223 1.02027 0.94281 0.99485 1.21787 0.96438 0.91515 0.84648 0.93229 1.86548 1.77894 1.57797 1.16768 0.93275 0.90267 0.93772 0.93584 0.97438 0.84886 1.02919 0.98553 0.92596 0.91926 0.92982 0.91371 0.91100 0.90065 0.91826 0.91018 0.90008 0.76128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 7.30 71.98 0.53 -3.31 16 2 C -0.04 -1.27 0.42 -52.18 -0.02 -1.29 16 3 C 0.08 3.00 4.50 86.30 0.39 3.38 16 4 N -0.68 -31.33 5.70 -517.93 -2.95 -34.29 16 5 C 0.21 11.92 5.44 85.56 0.47 12.38 16 6 C -0.53 -31.72 9.32 25.60 0.24 -31.48 16 7 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 8 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 9 N -0.94 -58.59 13.29 21.45 0.28 -58.31 16 10 Si 0.98 45.39 29.54 68.60 2.03 47.42 16 11 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 14 C -0.10 -2.70 4.57 30.60 0.14 -2.56 16 15 C -0.12 -2.41 5.65 30.60 0.17 -2.24 16 16 C -0.11 -1.85 5.92 30.60 0.18 -1.67 16 17 C -0.14 -2.48 5.27 30.59 0.16 -2.32 16 18 C 0.12 2.77 2.58 30.59 0.08 2.85 16 19 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 20 O -0.58 -14.71 11.97 -148.98 -1.78 -16.49 16 21 H 0.05 1.49 6.57 -2.39 -0.02 1.47 16 22 H 0.08 1.83 4.81 -2.38 -0.01 1.81 16 23 H 0.04 1.35 7.68 -2.39 -0.02 1.34 16 24 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.01 0.32 7.68 -2.39 -0.02 0.31 16 26 H 0.33 14.75 6.76 -89.69 -0.61 14.14 16 27 H -0.05 -2.92 8.14 -2.39 -0.02 -2.94 16 28 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.27 15.44 8.31 -92.71 -0.77 14.66 16 30 H 0.06 2.02 7.60 -2.39 -0.02 2.00 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.33 6.43 -2.39 -0.02 1.31 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 1.30 6.43 -2.39 -0.02 1.28 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.39 5.97 9.08 -74.06 -0.67 5.30 16 Total: -1.00 -68.92 290.71 0.13 -68.79 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -0.24 Total: 18.74 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: 2.79 Total: -25.87 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -2.67 Total: -92.59 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -1.78 Total: -16.49 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -68.92 0.13 -68.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592431041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.133 kcal (2) G-P(sol) polarization free energy of solvation -68.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds