Wall clock time and date at job start Thu Apr 9 2020 11:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 113.99763 * 2 1 4 4 H 1.08999 * 109.46771 * 30.00571 * 3 2 1 5 5 C 1.52992 * 109.47202 * 270.00275 * 3 2 1 6 6 C 1.52999 * 109.46921 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47179 * 60.00100 * 6 5 3 8 8 C 1.53005 * 109.46995 * 299.99723 * 7 6 5 9 9 C 1.52999 * 109.46557 * 149.99877 * 3 2 1 10 10 H 1.08999 * 109.47014 * 60.00842 * 9 3 2 11 11 N 1.46499 * 109.47493 * 300.00243 * 9 3 2 12 12 C 1.34777 * 119.99665 * 155.28120 * 11 9 3 13 13 O 1.21683 * 120.00206 * 359.72112 * 12 11 9 14 14 C 1.46375 * 119.99876 * 179.72458 * 12 11 9 15 15 H 1.08002 * 119.99626 * 359.97438 * 14 12 11 16 16 C 1.40042 * 120.00353 * 179.97438 * 14 12 11 17 17 N 1.30674 * 119.99645 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00470 * 179.97438 * 16 14 12 19 19 H 1.48510 * 109.46918 * 59.99740 * 18 16 14 20 20 H 1.48497 * 109.47531 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47039 * 300.00280 * 18 16 14 22 22 H 1.08999 * 109.47223 * 299.99241 * 1 2 3 23 23 H 1.09000 * 109.47378 * 60.00105 * 1 2 3 24 24 H 1.09007 * 109.46610 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47499 * 299.99850 * 5 3 2 26 26 H 1.09006 * 109.47246 * 59.99859 * 5 3 2 27 27 H 1.09005 * 109.47368 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.47077 * 299.99701 * 6 5 3 29 29 H 1.08999 * 109.47056 * 60.00198 * 7 6 5 30 30 H 1.09000 * 109.46999 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.47108 * 300.00306 * 8 7 6 32 32 H 1.08995 * 109.46860 * 179.97438 * 8 7 6 33 33 H 0.97001 * 119.99790 * 334.99833 * 11 9 3 34 34 H 0.97004 * 119.99544 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4424 6 6 2.8392 3.1695 -1.4423 7 6 4.1879 3.1279 -0.7210 8 6 3.9805 2.6619 0.7216 9 6 3.3589 1.2633 0.7213 10 1 4.0241 0.5695 0.2074 11 7 3.1603 0.8171 2.1025 12 6 4.1719 0.2316 2.7735 13 8 5.2487 0.0691 2.2305 14 6 3.9754 -0.2088 4.1555 15 1 3.0198 -0.0642 4.6376 16 6 5.0263 -0.8176 4.8527 17 7 6.1823 -0.9930 4.2692 18 14 4.7757 -1.3789 6.6166 19 1 3.6830 -2.3835 6.6659 20 1 6.0308 -1.9882 7.1253 21 1 4.4137 -0.2120 7.4607 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 2.8829 1.0777 -1.9563 26 1 1.2567 1.8015 -1.9563 27 1 2.9866 3.5017 -2.4700 28 1 2.1736 3.8631 -0.9286 29 1 4.8535 2.4344 -1.2348 30 1 4.6309 4.1238 -0.7213 31 1 3.3148 3.3556 1.2353 32 1 4.9413 2.6319 1.2353 33 1 2.3019 0.9467 2.5353 34 1 6.9102 -1.4150 4.7520 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593814710.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:13 Heat of formation + Delta-G solvation = -105.507498 kcal Electronic energy + Delta-G solvation = -16373.919264 eV Core-core repulsion = 13691.941814 eV Total energy + Delta-G solvation = -2681.977450 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.23484 -36.87042 -35.90118 -32.91443 -32.07802 -29.84617 -28.68402 -26.31476 -25.73711 -22.26309 -21.82153 -19.74247 -19.40333 -17.21274 -16.30704 -15.51783 -15.28901 -14.88735 -14.39929 -13.99526 -13.64231 -13.43500 -13.12976 -12.62963 -12.38679 -12.20144 -11.69857 -11.49018 -11.14116 -10.99800 -10.78873 -10.75822 -10.54803 -10.37459 -10.32131 -10.16306 -9.92221 -9.22736 -8.77817 -7.51094 -7.37255 -6.10647 -4.55748 3.20046 3.24507 3.26569 3.99503 4.15924 4.66676 4.72169 4.93359 5.16254 5.24684 5.34158 5.41349 5.51966 5.56132 5.62742 5.74892 5.79855 5.80681 5.91070 6.02277 6.15628 6.26116 6.29390 6.42499 6.45731 6.80079 6.82863 7.50280 7.52432 8.02990 8.21455 8.41866 9.10047 9.64953 10.68887 10.88802 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.035179 B = 0.007369 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.737149 B = 3798.941107 C = 4334.299199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.372 6.372 3 C 0.085 3.915 4 H 0.057 0.943 5 C -0.138 4.138 6 C -0.115 4.115 7 C -0.119 4.119 8 C -0.125 4.125 9 C 0.162 3.838 10 H 0.081 0.919 11 N -0.756 5.756 12 C 0.559 3.441 13 O -0.581 6.581 14 C -0.546 4.546 15 H 0.065 0.935 16 C 0.088 3.912 17 N -0.769 5.769 18 Si 0.906 3.094 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.269 1.269 22 H 0.039 0.961 23 H 0.034 0.966 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.377 0.623 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.659 6.534 -7.857 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.291 6.291 3 C 0.026 3.974 4 H 0.075 0.925 5 C -0.176 4.176 6 C -0.152 4.152 7 C -0.157 4.157 8 C -0.165 4.165 9 C 0.055 3.945 10 H 0.099 0.901 11 N -0.409 5.409 12 C 0.363 3.637 13 O -0.464 6.464 14 C -0.583 4.583 15 H 0.083 0.917 16 C -0.131 4.131 17 N -0.398 5.398 18 Si 0.731 3.269 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.194 1.194 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.208 0.792 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.540 6.152 -8.240 13.367 hybrid contribution -0.857 0.018 1.069 1.370 sum -9.396 6.170 -7.171 13.333 Atomic orbital electron populations 1.22735 0.82145 1.02338 0.99272 1.88045 1.18615 1.27541 1.94860 1.22479 0.95488 0.84330 0.95077 0.92519 1.22004 1.01027 0.97378 0.97178 1.21500 0.97205 0.96267 1.00267 1.21551 0.96744 1.01072 0.96378 1.21962 1.02170 0.96553 0.95766 1.20539 0.93420 0.95037 0.85491 0.90071 1.46032 1.15850 1.67017 1.12018 1.18145 0.82245 0.76687 0.86647 1.90585 1.25890 1.59789 1.70105 1.20849 0.98913 1.41759 0.96790 0.91667 1.25687 0.94474 0.93946 0.99028 1.70019 1.01825 1.31714 1.36259 0.86466 0.78160 0.79383 0.82879 1.19347 1.20606 1.19376 0.94268 0.94785 0.90002 0.90937 0.92191 0.92016 0.92197 0.91701 0.92149 0.92625 0.90565 0.79206 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.82 101.05 1.09 1.50 16 2 O -0.37 -6.46 10.21 -35.23 -0.36 -6.82 16 3 C 0.08 1.35 2.12 -26.74 -0.06 1.30 16 4 H 0.06 0.82 7.79 -51.93 -0.40 0.42 16 5 C -0.14 -1.83 5.54 -26.74 -0.15 -1.97 16 6 C -0.11 -1.37 5.92 -26.73 -0.16 -1.52 16 7 C -0.12 -1.68 5.92 -26.73 -0.16 -1.84 16 8 C -0.13 -2.23 5.49 -26.70 -0.15 -2.37 16 9 C 0.16 3.25 2.15 -67.90 -0.15 3.10 16 10 H 0.08 1.91 7.58 -51.93 -0.39 1.52 16 11 N -0.76 -17.62 4.94 -55.19 -0.27 -17.90 16 12 C 0.56 16.32 7.71 -12.99 -0.10 16.22 16 13 O -0.58 -19.15 14.68 5.20 0.08 -19.07 16 14 C -0.55 -15.86 9.54 -35.63 -0.34 -16.20 16 15 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 16 C 0.09 2.52 5.50 -17.37 -0.10 2.42 16 17 N -0.77 -23.58 11.83 55.55 0.66 -22.92 16 18 Si 0.91 20.61 29.56 -169.99 -5.02 15.58 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 23 H 0.03 0.36 7.87 -51.93 -0.41 -0.05 16 24 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.69 7.87 -51.93 -0.41 0.28 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.38 7.92 8.58 -40.82 -0.35 7.57 16 34 H 0.27 7.46 8.29 -40.82 -0.34 7.12 16 LS Contribution 282.31 15.07 4.25 4.25 Total: -1.00 -34.57 282.31 -6.24 -40.81 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.31 Total: 5.43 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -0.26 Total: 0.64 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.38 Total: -40.82 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.28 Total: -25.89 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -34.57 -6.24 -40.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593814710.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.700 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds