Wall clock time and date at job start Thu Apr 9 2020 11:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 113.99763 * 2 1 4 4 H 1.08999 * 109.46771 * 30.00571 * 3 2 1 5 5 C 1.52992 * 109.47202 * 270.00275 * 3 2 1 6 6 C 1.52999 * 109.46921 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47179 * 60.00100 * 6 5 3 8 8 C 1.53005 * 109.46995 * 299.99723 * 7 6 5 9 9 C 1.52999 * 109.46557 * 149.99877 * 3 2 1 10 10 H 1.08999 * 109.47014 * 60.00842 * 9 3 2 11 11 N 1.46499 * 109.47493 * 300.00243 * 9 3 2 12 12 C 1.34777 * 119.99665 * 155.28120 * 11 9 3 13 13 O 1.21683 * 120.00206 * 359.72112 * 12 11 9 14 14 C 1.46375 * 119.99876 * 179.72458 * 12 11 9 15 15 H 1.08002 * 119.99626 * 359.97438 * 14 12 11 16 16 C 1.40042 * 120.00353 * 179.97438 * 14 12 11 17 17 N 1.30674 * 119.99645 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00470 * 179.97438 * 16 14 12 19 19 H 1.48510 * 109.46918 * 59.99740 * 18 16 14 20 20 H 1.48497 * 109.47531 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47039 * 300.00280 * 18 16 14 22 22 H 1.08999 * 109.47223 * 299.99241 * 1 2 3 23 23 H 1.09000 * 109.47378 * 60.00105 * 1 2 3 24 24 H 1.09007 * 109.46610 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47499 * 299.99850 * 5 3 2 26 26 H 1.09006 * 109.47246 * 59.99859 * 5 3 2 27 27 H 1.09005 * 109.47368 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.47077 * 299.99701 * 6 5 3 29 29 H 1.08999 * 109.47056 * 60.00198 * 7 6 5 30 30 H 1.09000 * 109.46999 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.47108 * 300.00306 * 8 7 6 32 32 H 1.08995 * 109.46860 * 179.97438 * 8 7 6 33 33 H 0.97001 * 119.99790 * 334.99833 * 11 9 3 34 34 H 0.97004 * 119.99544 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4424 6 6 2.8392 3.1695 -1.4423 7 6 4.1879 3.1279 -0.7210 8 6 3.9805 2.6619 0.7216 9 6 3.3589 1.2633 0.7213 10 1 4.0241 0.5695 0.2074 11 7 3.1603 0.8171 2.1025 12 6 4.1719 0.2316 2.7735 13 8 5.2487 0.0691 2.2305 14 6 3.9754 -0.2088 4.1555 15 1 3.0198 -0.0642 4.6376 16 6 5.0263 -0.8176 4.8527 17 7 6.1823 -0.9930 4.2692 18 14 4.7757 -1.3789 6.6166 19 1 3.6830 -2.3835 6.6659 20 1 6.0308 -1.9882 7.1253 21 1 4.4137 -0.2120 7.4607 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 2.8829 1.0777 -1.9563 26 1 1.2567 1.8015 -1.9563 27 1 2.9866 3.5017 -2.4700 28 1 2.1736 3.8631 -0.9286 29 1 4.8535 2.4344 -1.2348 30 1 4.6309 4.1238 -0.7213 31 1 3.3148 3.3556 1.2353 32 1 4.9413 2.6319 1.2353 33 1 2.3019 0.9467 2.5353 34 1 6.9102 -1.4150 4.7520 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593814710.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:13 Heat of formation + Delta-G solvation = -131.692129 kcal Electronic energy + Delta-G solvation = -16375.054715 eV Core-core repulsion = 13691.941814 eV Total energy + Delta-G solvation = -2683.112900 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.66915 -38.80528 -37.24686 -34.87822 -34.18993 -31.09044 -30.29099 -28.05120 -27.15277 -23.71037 -23.13642 -21.43243 -21.03294 -19.19722 -17.66905 -17.37535 -16.95856 -16.12854 -15.96201 -15.58485 -15.13774 -14.71915 -14.50814 -14.35131 -14.06291 -13.72250 -13.21260 -13.04426 -12.73216 -12.61269 -12.58531 -12.13346 -12.06413 -12.00505 -11.67564 -11.54619 -11.24977 -10.91217 -10.46341 -9.80201 -9.39276 -8.27319 -6.84393 1.38728 1.43194 1.54553 2.25010 2.49318 2.82774 3.08286 3.62406 3.74410 4.01170 4.07398 4.18060 4.27366 4.30534 4.44784 4.53541 4.55802 4.60384 4.84323 4.89485 4.97342 5.05988 5.14472 5.18350 5.24271 5.31695 5.36178 5.47767 5.89722 6.25156 6.32894 6.38241 6.87471 7.58762 8.52792 8.70184 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.035179 B = 0.007369 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.737149 B = 3798.941107 C = 4334.299199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.092 3.908 4 H 0.080 0.920 5 C -0.133 4.133 6 C -0.106 4.106 7 C -0.116 4.116 8 C -0.119 4.119 9 C 0.156 3.844 10 H 0.032 0.968 11 N -0.745 5.745 12 C 0.541 3.459 13 O -0.633 6.633 14 C -0.577 4.577 15 H 0.085 0.915 16 C 0.027 3.973 17 N -0.824 5.824 18 Si 0.999 3.001 19 H -0.255 1.255 20 H -0.273 1.273 21 H -0.253 1.253 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.028 0.972 33 H 0.390 0.610 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.203 7.688 -7.580 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C 0.034 3.966 4 H 0.098 0.902 5 C -0.171 4.171 6 C -0.144 4.144 7 C -0.154 4.154 8 C -0.158 4.158 9 C 0.050 3.950 10 H 0.050 0.950 11 N -0.398 5.398 12 C 0.345 3.655 13 O -0.520 6.520 14 C -0.613 4.613 15 H 0.103 0.897 16 C -0.188 4.188 17 N -0.453 5.453 18 Si 0.818 3.182 19 H -0.179 1.179 20 H -0.198 1.198 21 H -0.177 1.177 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.106 0.894 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.223 0.777 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.148 7.338 -7.992 15.557 hybrid contribution -0.094 -0.347 0.927 0.995 sum -11.242 6.991 -7.065 15.006 Atomic orbital electron populations 1.22967 0.79647 1.03464 1.00985 1.87997 1.21445 1.28431 1.95188 1.22410 0.92982 0.84612 0.96573 0.90182 1.21996 1.02368 0.97762 0.95010 1.21489 0.95438 0.95716 1.01728 1.21543 0.98637 1.01549 0.93635 1.21851 0.99823 0.95688 0.98423 1.20746 0.95780 0.94921 0.83513 0.94971 1.45729 1.15051 1.65712 1.13260 1.18552 0.82559 0.76896 0.87454 1.90536 1.28184 1.61974 1.71306 1.21413 1.00260 1.42402 0.97245 0.89674 1.27000 0.93569 0.93257 1.04926 1.70202 1.03278 1.32746 1.39105 0.85063 0.78586 0.79374 0.75174 1.17933 1.19819 1.17660 0.93322 0.92163 0.89363 0.92672 0.89173 0.89245 0.90131 0.93325 0.89975 0.90600 0.95310 0.77706 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.82 113.37 1.23 1.81 16 2 O -0.41 -13.94 10.21 -148.98 -1.52 -15.46 16 3 C 0.09 2.83 2.12 30.59 0.06 2.89 16 4 H 0.08 2.08 7.79 -2.39 -0.02 2.06 16 5 C -0.13 -3.20 5.54 30.59 0.17 -3.03 16 6 C -0.11 -2.16 5.92 30.59 0.18 -1.98 16 7 C -0.12 -3.15 5.92 30.60 0.18 -2.96 16 8 C -0.12 -4.31 5.49 30.62 0.17 -4.14 16 9 C 0.16 6.49 2.15 45.01 0.10 6.59 16 10 H 0.03 1.64 7.58 -2.39 -0.02 1.62 16 11 N -0.75 -35.86 4.94 -446.74 -2.21 -38.07 16 12 C 0.54 33.11 7.71 86.36 0.67 33.78 16 13 O -0.63 -44.49 14.68 -4.29 -0.06 -44.55 16 14 C -0.58 -34.17 9.54 24.83 0.24 -33.94 16 15 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 16 C 0.03 1.57 5.50 85.30 0.47 2.04 16 17 N -0.82 -52.35 11.83 21.83 0.26 -52.09 16 18 Si 1.00 42.31 29.56 68.60 2.03 44.34 16 19 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 22 H 0.05 1.01 8.08 -2.39 -0.02 0.99 16 23 H 0.06 1.06 7.87 -2.39 -0.02 1.04 16 24 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.09 1.68 7.87 -2.38 -0.02 1.66 16 27 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.39 16.44 8.58 -92.71 -0.80 15.65 16 34 H 0.27 15.75 8.29 -92.71 -0.77 14.99 16 Total: -1.00 -80.63 282.31 2.24 -78.39 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.28 Total: 26.39 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 3.46 Total: 1.05 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -1.95 Total: -90.16 kcal Atomic # 8 Polarization: -58.42 SS G_CDS: -1.58 Total: -60.01 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -80.63 2.24 -78.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593814710.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.305 kcal (2) G-P(sol) polarization free energy of solvation -80.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds