Wall clock time and date at job start Thu Apr 9 2020 11:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53006 * 109.46786 * 2 1 4 4 C 1.53004 * 109.46914 * 119.99654 * 2 1 3 5 5 C 1.53000 * 109.46794 * 175.00037 * 4 2 1 6 6 O 1.42898 * 109.46861 * 180.02562 * 5 4 2 7 7 C 1.42908 * 113.99771 * 179.97438 * 6 5 4 8 8 H 1.09000 * 110.78049 * 328.21680 * 7 6 5 9 9 C 1.55152 * 110.71774 * 204.97677 * 7 6 5 10 10 C 1.55135 * 101.48415 * 205.97117 * 9 7 6 11 11 N 1.47422 * 104.72256 * 37.29963 * 10 9 7 12 12 C 1.36933 * 125.65011 * 155.82266 * 11 10 9 13 13 H 1.08004 * 120.00043 * 190.43950 * 12 11 10 14 14 C 1.38811 * 120.00083 * 10.43368 * 12 11 10 15 15 N 1.31622 * 119.99907 * 9.07202 * 14 12 11 16 16 Si 1.86800 * 119.99950 * 189.07694 * 14 12 11 17 17 H 1.48506 * 109.46847 * 265.01200 * 16 14 12 18 18 H 1.48495 * 109.47438 * 25.01098 * 16 14 12 19 19 H 1.48502 * 109.47022 * 145.01513 * 16 14 12 20 20 C 1.47026 * 108.70003 * 335.54793 * 11 10 9 21 21 H 1.08998 * 109.47053 * 299.99738 * 1 2 3 22 22 H 1.08999 * 109.46730 * 60.00202 * 1 2 3 23 23 H 1.08999 * 109.46872 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47053 * 240.00262 * 2 1 3 25 25 H 1.09007 * 109.46901 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47153 * 299.99872 * 3 2 1 27 27 H 1.08998 * 109.47110 * 60.00298 * 3 2 1 28 28 H 1.08998 * 109.46596 * 55.00505 * 4 2 1 29 29 H 1.08996 * 109.47341 * 295.00444 * 4 2 1 30 30 H 1.09005 * 109.46954 * 60.00155 * 5 4 2 31 31 H 1.08996 * 109.47509 * 300.00304 * 5 4 2 32 32 H 1.08996 * 111.00666 * 324.20745 * 9 7 6 33 33 H 1.08998 * 111.00510 * 88.02688 * 9 7 6 34 34 H 1.09002 * 110.49574 * 278.45362 * 10 9 7 35 35 H 1.09000 * 110.34396 * 156.06498 * 10 9 7 36 36 H 0.96996 * 119.99869 * 180.02562 * 15 14 12 37 37 H 1.09005 * 109.87591 * 120.70508 * 20 11 10 38 38 H 1.08995 * 109.88707 * 241.86755 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.8310 1.1880 6 8 4.0411 -1.5051 2.3546 7 6 5.4610 -1.6614 2.3965 8 1 5.8681 -1.7694 1.3911 9 6 5.8538 -2.8741 3.2810 10 6 7.2810 -2.4734 3.7383 11 7 7.2117 -1.0159 3.9486 12 6 8.0324 -0.2879 4.7681 13 1 7.7998 0.7439 4.9867 14 6 9.1631 -0.8760 5.3180 15 7 9.5459 -2.0693 4.9158 16 14 10.1413 0.0261 6.6290 17 1 11.2652 0.7583 5.9918 18 1 9.2567 0.9907 7.3307 19 1 10.6796 -0.9535 7.6067 20 6 6.1198 -0.4726 3.1275 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1301 1.4426 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9564 0.8900 28 1 1.6054 -1.7197 1.2952 29 1 1.7516 -0.1583 2.1370 30 1 3.9995 0.1676 1.1421 31 1 3.8533 -1.3939 0.3004 32 1 5.1801 -2.9713 4.1323 33 1 5.8760 -3.7935 2.6959 34 1 8.0106 -2.7109 2.9641 35 1 7.5366 -2.9793 4.6694 36 1 10.3358 -2.4805 5.3003 37 1 5.3874 0.0222 3.7654 38 1 6.5191 0.2345 2.4005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596616455.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:28 Heat of formation + Delta-G solvation = -44.268137 kcal Electronic energy + Delta-G solvation = -16000.579444 eV Core-core repulsion = 13457.090627 eV Total energy + Delta-G solvation = -2543.488817 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -38.49565 -36.87265 -35.37813 -32.17611 -29.69207 -28.80776 -27.33781 -26.92083 -24.34061 -22.97663 -20.42528 -20.12720 -19.77930 -16.89745 -16.50693 -15.63475 -14.88857 -14.68401 -14.27173 -14.12771 -13.85187 -13.12458 -12.86775 -12.42303 -12.35714 -12.03468 -11.77789 -11.64689 -11.46959 -11.02061 -10.98057 -10.81098 -10.76867 -10.67477 -10.53272 -10.21383 -10.06288 -9.74890 -9.63676 -9.01216 -8.56741 -6.77213 -5.72331 -3.05157 3.41567 3.47070 3.49736 3.93528 4.52826 4.74363 4.79560 4.92043 5.22933 5.36645 5.43907 5.46084 5.49836 5.54924 5.56587 5.61347 5.68368 5.77044 5.79755 5.85700 5.91821 5.98721 6.05871 6.24916 6.28222 6.37763 6.56228 6.60458 6.69797 6.77601 7.51609 7.59065 7.71403 7.82204 8.28582 9.21723 9.83486 10.51341 11.40974 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051984 B = 0.004844 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.497587 B = 5779.092053 C = 6141.860527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.152 4.152 4 C -0.113 4.113 5 C 0.060 3.940 6 O -0.380 6.380 7 C 0.077 3.923 8 H 0.062 0.938 9 C -0.139 4.139 10 C 0.174 3.826 11 N -0.601 5.601 12 C -0.228 4.228 13 H 0.076 0.924 14 C -0.008 4.008 15 N -0.920 5.920 16 Si 0.912 3.088 17 H -0.289 1.289 18 H -0.280 1.280 19 H -0.290 1.290 20 C 0.117 3.883 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.253 0.747 37 H 0.033 0.967 38 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.323 2.012 -9.532 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.209 4.209 4 C -0.151 4.151 5 C -0.017 4.017 6 O -0.299 6.299 7 C 0.019 3.981 8 H 0.080 0.920 9 C -0.178 4.178 10 C 0.049 3.951 11 N -0.329 5.329 12 C -0.357 4.357 13 H 0.094 0.906 14 C -0.204 4.204 15 N -0.567 5.567 16 Si 0.742 3.258 17 H -0.216 1.216 18 H -0.206 1.206 19 H -0.216 1.216 20 C -0.010 4.010 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -14.262 1.919 -9.266 17.116 hybrid contribution 0.810 0.584 0.377 1.068 sum -13.452 2.504 -8.889 16.317 Atomic orbital electron populations 1.21823 0.95050 1.01724 1.01708 1.21058 0.95790 0.96437 0.98058 1.21933 1.01493 0.95830 1.01693 1.21573 0.94139 1.01191 0.98179 1.22534 0.94614 0.96330 0.88237 1.87901 1.22047 1.78048 1.41899 1.23187 0.79543 0.97041 0.98334 0.91992 1.23165 1.00368 0.95369 0.98882 1.21461 0.89069 0.84526 1.00064 1.44383 1.35437 1.03257 1.49785 1.19044 1.01685 0.95219 1.19711 0.90640 1.24833 0.97330 0.97408 1.00859 1.69950 1.26207 1.15934 1.44600 0.86105 0.79875 0.78501 0.81312 1.21628 1.20563 1.21575 1.21727 0.91388 0.94350 0.93498 0.92588 0.92769 0.92678 0.91204 0.92257 0.92864 0.92498 0.91335 0.91139 0.93308 0.93963 0.91173 0.91920 0.95372 0.90911 0.93693 0.94937 0.96293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.19 37.16 0.34 -0.84 16 2 C -0.09 -0.89 2.92 -90.61 -0.26 -1.15 16 3 C -0.15 -1.41 8.95 37.16 0.33 -1.07 16 4 C -0.11 -1.31 5.05 -26.73 -0.14 -1.44 16 5 C 0.06 0.83 5.57 37.16 0.21 1.04 16 6 O -0.38 -6.78 10.07 -35.23 -0.35 -7.13 16 7 C 0.08 1.49 3.39 -24.90 -0.08 1.41 16 8 H 0.06 1.12 7.89 -51.93 -0.41 0.71 16 9 C -0.14 -2.83 6.82 -24.46 -0.17 -2.99 16 10 C 0.17 4.37 5.43 -2.41 -0.01 4.35 16 11 N -0.60 -16.21 3.39 -169.93 -0.58 -16.78 16 12 C -0.23 -6.61 10.24 -15.06 -0.15 -6.76 16 13 H 0.08 2.12 7.85 -52.48 -0.41 1.70 16 14 C -0.01 -0.23 5.40 -17.43 -0.09 -0.32 16 15 N -0.92 -27.47 10.68 55.49 0.59 -26.88 16 16 Si 0.91 22.43 29.56 -169.99 -5.03 17.40 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 C 0.12 2.64 7.02 -3.06 -0.02 2.62 16 21 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.58 6.56 -51.92 -0.34 0.24 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.67 6.56 -51.93 -0.34 0.33 16 31 H 0.04 0.54 8.11 -51.93 -0.42 0.12 16 32 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 35 H 0.07 2.00 6.95 -51.93 -0.36 1.64 16 36 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 302.92 15.07 4.56 4.56 Total: -1.00 -30.78 302.92 -7.76 -38.54 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -6.91 Total: -4.55 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -0.05 Total: -5.17 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.02 Total: -43.66 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.35 Total: -7.13 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.78 -7.76 -38.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596616455.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.724 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds