Wall clock time and date at job start Thu Apr 9 2020 11:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46958 * 2 1 4 4 C 1.46503 * 119.99509 * 265.04324 * 3 2 1 5 5 C 1.50700 * 109.47223 * 269.99915 * 4 3 2 6 6 H 1.08004 * 119.99819 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99979 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00217 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00027 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47413 * 89.99491 * 9 7 5 11 11 H 1.48506 * 109.46878 * 209.99803 * 9 7 5 12 12 H 1.48503 * 109.47051 * 329.99542 * 9 7 5 13 13 C 1.34771 * 120.00104 * 85.04927 * 3 2 1 14 14 O 1.21284 * 119.99692 * 185.45652 * 13 3 2 15 15 C 1.50701 * 120.00163 * 5.45144 * 13 3 2 16 16 H 1.08996 * 109.46891 * 311.40734 * 15 13 3 17 17 O 1.42898 * 109.47049 * 191.40744 * 15 13 3 18 18 C 1.52997 * 109.46822 * 71.40513 * 15 13 3 19 19 C 1.53009 * 117.49637 * 173.59395 * 18 15 13 20 20 C 1.53000 * 60.03055 * 107.47906 * 19 18 15 21 21 H 1.09004 * 109.47272 * 59.99990 * 1 2 3 22 22 H 1.08993 * 109.47331 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47237 * 300.00515 * 1 2 3 24 24 H 1.08999 * 109.46959 * 240.00177 * 2 1 3 25 25 H 1.08997 * 109.46912 * 120.00016 * 2 1 3 26 26 H 1.09001 * 109.47203 * 30.00689 * 4 3 2 27 27 H 1.09006 * 109.46652 * 150.00291 * 4 3 2 28 28 H 0.96997 * 120.00260 * 180.02562 * 8 7 5 29 29 H 0.96697 * 113.99926 * 299.99424 * 17 15 13 30 30 H 1.09002 * 115.55353 * 27.92652 * 18 15 13 31 31 H 1.09000 * 117.49856 * 214.98083 * 19 18 15 32 32 H 1.09002 * 117.49907 * 359.97438 * 19 18 15 33 33 H 1.09004 * 117.49876 * 107.50116 * 20 19 18 34 34 H 1.08998 * 117.49887 * 252.51944 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3658 2.0353 -1.2641 5 6 3.8195 1.7877 -1.5747 6 1 4.4240 1.2015 -0.8984 7 6 4.3775 2.3087 -2.7228 8 7 5.6459 2.0923 -2.9943 9 14 3.3317 3.3221 -3.8929 10 1 3.4021 4.7540 -3.5060 11 1 3.8394 3.1582 -5.2788 12 1 1.9223 2.8594 -3.8241 13 6 2.1479 2.0502 1.1628 14 8 2.4568 3.2230 1.1565 15 6 1.9090 1.3409 2.4708 16 1 0.9689 0.7918 2.4199 17 8 1.8436 2.3003 3.5278 18 6 3.0562 0.3646 2.7384 19 6 3.0773 -0.3463 4.0932 20 6 2.7109 -1.1241 2.8276 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.7486 1.6286 -2.0652 27 1 2.1900 3.1077 -1.1786 28 1 6.0386 2.4592 -3.8018 29 1 2.6481 2.8267 3.6315 30 1 4.0154 0.6337 2.2963 31 1 4.0504 -0.5451 4.5421 32 1 2.2742 -0.1180 4.7939 33 1 3.4430 -1.8346 2.4439 34 1 1.6666 -1.4072 2.6955 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596891576.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:31 Heat of formation + Delta-G solvation = -61.075531 kcal Electronic energy + Delta-G solvation = -16517.588073 eV Core-core repulsion = 13837.537338 eV Total energy + Delta-G solvation = -2680.050735 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.85575 -37.31899 -35.87590 -34.76543 -32.73400 -30.41584 -28.78974 -26.67234 -23.14866 -22.55664 -22.23988 -20.97240 -18.91795 -16.97920 -16.88540 -16.66173 -15.78784 -15.08667 -14.46227 -14.02424 -13.66145 -13.53709 -13.40774 -12.92896 -12.50716 -12.27355 -11.99161 -11.59917 -11.51133 -11.28648 -11.01652 -10.88322 -10.56523 -10.51459 -10.38847 -10.17486 -10.02006 -9.56002 -8.83988 -8.61261 -7.74194 -6.11469 -4.10383 3.17816 3.27798 3.33860 3.36145 3.67046 3.76826 4.37743 4.56651 4.67800 4.82877 4.95228 5.09962 5.23319 5.27082 5.40369 5.51750 5.61252 5.65521 5.71550 5.84933 5.99716 6.09301 6.12804 6.21662 6.40201 6.68810 6.93575 7.32172 7.58566 7.69387 8.21757 8.43948 8.86346 8.92834 9.49049 11.01734 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.030753 B = 0.008187 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.266815 B = 3419.429644 C = 3474.992562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.093 3.907 3 N -0.585 5.585 4 C 0.213 3.787 5 C -0.529 4.529 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.486 3.514 14 O -0.539 6.539 15 C 0.122 3.878 16 H 0.115 0.885 17 O -0.542 6.542 18 C -0.187 4.187 19 C -0.162 4.162 20 C -0.172 4.172 21 H 0.059 0.941 22 H 0.063 0.937 23 H 0.051 0.949 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.030 0.970 27 H 0.037 0.963 28 H 0.265 0.735 29 H 0.384 0.616 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.569 -7.254 9.744 14.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.031 4.031 3 N -0.317 5.317 4 C 0.093 3.907 5 C -0.567 4.567 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.272 3.728 14 O -0.417 6.417 15 C 0.059 3.941 16 H 0.132 0.868 17 O -0.348 6.348 18 C -0.206 4.206 19 C -0.199 4.199 20 C -0.209 4.209 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.070 0.930 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.233 0.767 30 H 0.132 0.868 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.854 -6.833 9.658 14.777 hybrid contribution 0.248 0.668 -0.978 1.210 sum -8.605 -6.165 8.680 13.690 Atomic orbital electron populations 1.22279 0.96879 1.01683 1.02260 1.21715 0.93280 0.83974 1.04107 1.47897 1.63133 1.13238 1.07468 1.19689 0.96713 0.94041 0.80276 1.21317 0.93534 1.34275 1.07625 0.90766 1.24853 0.94875 0.95678 0.97595 1.69890 1.11815 1.45475 1.26385 0.86849 0.80993 0.81463 0.80398 1.19902 1.21033 1.19061 1.21106 0.78105 0.87592 0.86030 1.90666 1.47879 1.16080 1.87037 1.21418 0.98408 0.88527 0.85737 0.86791 1.86485 1.43854 1.52722 1.51696 1.22900 1.01027 0.94060 1.02637 1.22894 1.03263 1.03071 0.90667 1.23030 1.02563 0.93329 1.01974 0.92189 0.91795 0.93007 0.89622 0.90186 0.95221 0.94535 0.92541 0.76701 0.86775 0.88659 0.88267 0.88180 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.08 37.16 0.37 -1.82 16 2 C 0.09 1.45 5.75 -4.04 -0.02 1.43 16 3 N -0.59 -12.04 2.47 -175.05 -0.43 -12.47 16 4 C 0.21 5.25 4.25 -5.19 -0.02 5.23 16 5 C -0.53 -15.11 9.94 -34.44 -0.34 -15.45 16 6 H 0.07 2.30 8.06 -52.48 -0.42 1.88 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 9 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 13 C 0.49 10.05 6.90 -10.99 -0.08 9.97 16 14 O -0.54 -13.43 15.86 -14.09 -0.22 -13.65 16 15 C 0.12 1.91 2.82 -27.88 -0.08 1.83 16 16 H 0.11 1.57 6.01 -51.93 -0.31 1.26 16 17 O -0.54 -8.57 12.84 -54.88 -0.70 -9.27 16 18 C -0.19 -2.59 4.68 -90.58 -0.42 -3.01 16 19 C -0.16 -1.77 10.03 -26.73 -0.27 -2.03 16 20 C -0.17 -1.87 8.24 -26.69 -0.22 -2.09 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.64 6.96 -51.93 -0.36 0.28 16 24 H 0.09 1.39 8.03 -51.93 -0.42 0.97 16 25 H 0.08 1.08 3.48 -51.93 -0.18 0.90 16 26 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 27 H 0.04 0.97 6.78 -51.93 -0.35 0.62 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.38 5.51 8.72 45.56 0.40 5.91 16 30 H 0.11 1.85 8.06 -51.93 -0.42 1.43 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.10 0.92 7.66 -51.93 -0.40 0.53 16 LS Contribution 281.41 15.07 4.24 4.24 Total: -1.00 -33.58 281.41 -6.31 -39.89 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.12 Total: 4.98 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.18 Total: -3.95 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.34 Total: -39.23 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.93 Total: -22.92 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.58 -6.31 -39.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596891576.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.185 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds