Wall clock time and date at job start Thu Apr 9 2020 11:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46958 * 2 1 4 4 C 1.46503 * 119.99509 * 265.04324 * 3 2 1 5 5 C 1.50700 * 109.47223 * 269.99915 * 4 3 2 6 6 H 1.08004 * 119.99819 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99979 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00217 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00027 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47413 * 89.99491 * 9 7 5 11 11 H 1.48506 * 109.46878 * 209.99803 * 9 7 5 12 12 H 1.48503 * 109.47051 * 329.99542 * 9 7 5 13 13 C 1.34771 * 120.00104 * 85.04927 * 3 2 1 14 14 O 1.21284 * 119.99692 * 185.45652 * 13 3 2 15 15 C 1.50701 * 120.00163 * 5.45144 * 13 3 2 16 16 H 1.08996 * 109.46891 * 311.40734 * 15 13 3 17 17 O 1.42898 * 109.47049 * 191.40744 * 15 13 3 18 18 C 1.52997 * 109.46822 * 71.40513 * 15 13 3 19 19 C 1.53009 * 117.49637 * 173.59395 * 18 15 13 20 20 C 1.53000 * 60.03055 * 107.47906 * 19 18 15 21 21 H 1.09004 * 109.47272 * 59.99990 * 1 2 3 22 22 H 1.08993 * 109.47331 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47237 * 300.00515 * 1 2 3 24 24 H 1.08999 * 109.46959 * 240.00177 * 2 1 3 25 25 H 1.08997 * 109.46912 * 120.00016 * 2 1 3 26 26 H 1.09001 * 109.47203 * 30.00689 * 4 3 2 27 27 H 1.09006 * 109.46652 * 150.00291 * 4 3 2 28 28 H 0.96997 * 120.00260 * 180.02562 * 8 7 5 29 29 H 0.96697 * 113.99926 * 299.99424 * 17 15 13 30 30 H 1.09002 * 115.55353 * 27.92652 * 18 15 13 31 31 H 1.09000 * 117.49856 * 214.98083 * 19 18 15 32 32 H 1.09002 * 117.49907 * 359.97438 * 19 18 15 33 33 H 1.09004 * 117.49876 * 107.50116 * 20 19 18 34 34 H 1.08998 * 117.49887 * 252.51944 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3658 2.0353 -1.2641 5 6 3.8195 1.7877 -1.5747 6 1 4.4240 1.2015 -0.8984 7 6 4.3775 2.3087 -2.7228 8 7 5.6459 2.0923 -2.9943 9 14 3.3317 3.3221 -3.8929 10 1 3.4021 4.7540 -3.5060 11 1 3.8394 3.1582 -5.2788 12 1 1.9223 2.8594 -3.8241 13 6 2.1479 2.0502 1.1628 14 8 2.4568 3.2230 1.1565 15 6 1.9090 1.3409 2.4708 16 1 0.9689 0.7918 2.4199 17 8 1.8436 2.3003 3.5278 18 6 3.0562 0.3646 2.7384 19 6 3.0773 -0.3463 4.0932 20 6 2.7109 -1.1241 2.8276 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.7486 1.6286 -2.0652 27 1 2.1900 3.1077 -1.1786 28 1 6.0386 2.4592 -3.8018 29 1 2.6481 2.8267 3.6315 30 1 4.0154 0.6337 2.2963 31 1 4.0504 -0.5451 4.5421 32 1 2.2742 -0.1180 4.7939 33 1 3.4430 -1.8346 2.4439 34 1 1.6666 -1.4072 2.6955 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596891576.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:30 Heat of formation + Delta-G solvation = -85.468984 kcal Electronic energy + Delta-G solvation = -16518.645852 eV Core-core repulsion = 13837.537338 eV Total energy + Delta-G solvation = -2681.108514 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.32463 -38.59323 -37.35045 -36.08048 -34.86752 -31.99184 -30.33171 -28.30070 -24.53538 -24.22118 -23.25805 -22.13151 -20.45565 -19.12875 -18.40177 -17.97097 -17.22575 -16.50176 -16.21007 -15.48024 -15.16899 -14.88898 -14.64132 -14.53919 -14.09474 -13.82096 -13.41830 -13.21262 -12.97943 -12.52669 -12.39922 -12.33482 -12.08498 -12.04754 -11.79167 -11.74264 -11.42067 -11.06584 -10.86073 -10.41034 -9.45841 -8.37139 -6.42224 1.29927 1.33880 1.42284 1.60186 2.21731 2.28085 2.71158 2.96970 3.37179 3.49077 3.73627 3.95694 3.96147 4.13662 4.32031 4.37832 4.55860 4.61348 4.78338 4.79761 4.86780 4.95575 4.98893 5.01120 5.14444 5.29042 5.36180 5.43379 5.60988 6.19797 6.43458 6.58753 6.66911 7.16223 7.30815 8.79440 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.030753 B = 0.008187 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.266815 B = 3419.429644 C = 3474.992562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.085 3.915 3 N -0.591 5.591 4 C 0.221 3.779 5 C -0.535 4.535 6 H 0.031 0.969 7 C 0.013 3.987 8 N -0.943 5.943 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.272 1.272 12 H -0.240 1.240 13 C 0.473 3.527 14 O -0.594 6.594 15 C 0.139 3.861 16 H 0.143 0.857 17 O -0.546 6.546 18 C -0.216 4.216 19 C -0.142 4.142 20 C -0.157 4.157 21 H 0.047 0.953 22 H 0.101 0.899 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.103 0.897 26 H 0.049 0.951 27 H 0.015 0.985 28 H 0.269 0.731 29 H 0.388 0.612 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.977 -8.724 10.290 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.037 4.037 3 N -0.322 5.322 4 C 0.099 3.901 5 C -0.574 4.574 6 H 0.050 0.950 7 C -0.186 4.186 8 N -0.582 5.582 9 Si 0.768 3.232 10 H -0.203 1.203 11 H -0.197 1.197 12 H -0.163 1.163 13 C 0.261 3.739 14 O -0.476 6.476 15 C 0.076 3.924 16 H 0.160 0.840 17 O -0.352 6.352 18 C -0.236 4.236 19 C -0.178 4.178 20 C -0.193 4.193 21 H 0.067 0.933 22 H 0.119 0.881 23 H 0.077 0.923 24 H 0.095 0.905 25 H 0.121 0.879 26 H 0.067 0.933 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.237 0.763 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.287 -8.359 10.223 17.372 hybrid contribution 1.091 1.069 -1.076 1.869 sum -10.196 -7.290 9.146 15.516 Atomic orbital electron populations 1.22228 0.93917 1.04068 1.02071 1.22063 0.95615 0.81177 1.04845 1.48018 1.62859 1.15094 1.06206 1.19349 0.94381 0.93433 0.82934 1.21520 0.95383 1.33551 1.06928 0.95027 1.25814 0.96199 0.96899 0.99638 1.70034 1.13860 1.46961 1.27396 0.85754 0.80425 0.78977 0.78050 1.20348 1.19736 1.16319 1.22191 0.76722 0.87236 0.87715 1.90622 1.50355 1.18635 1.87999 1.21408 1.00251 0.88194 0.82527 0.83959 1.86458 1.44376 1.53045 1.51310 1.22652 0.98954 0.95944 1.06016 1.22986 1.04246 1.00803 0.89801 1.23228 1.04227 0.90811 1.01051 0.93335 0.88054 0.92292 0.90539 0.87922 0.93327 0.96647 0.92210 0.76279 0.90341 0.87756 0.87028 0.87666 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 10.08 71.98 0.73 -2.89 16 2 C 0.08 2.49 5.75 86.38 0.50 2.98 16 3 N -0.59 -24.30 2.47 -826.14 -2.04 -26.34 16 4 C 0.22 11.00 4.25 85.63 0.36 11.37 16 5 C -0.54 -31.65 9.94 25.60 0.25 -31.39 16 6 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 7 C 0.01 0.76 5.47 84.65 0.46 1.22 16 8 N -0.94 -59.56 13.96 21.45 0.30 -59.26 16 9 Si 0.95 44.89 27.47 68.60 1.88 46.77 16 10 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 13 C 0.47 19.79 6.90 87.66 0.61 20.39 16 14 O -0.59 -30.73 15.86 15.74 0.25 -30.48 16 15 C 0.14 4.15 2.82 29.85 0.08 4.24 16 16 H 0.14 3.43 6.01 -2.39 -0.01 3.42 16 17 O -0.55 -16.69 12.84 -130.19 -1.67 -18.36 16 18 C -0.22 -5.74 4.68 -10.77 -0.05 -5.79 16 19 C -0.14 -2.68 10.03 30.60 0.31 -2.37 16 20 C -0.16 -2.89 8.24 30.62 0.25 -2.63 16 21 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 22 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.06 1.22 6.96 -2.39 -0.02 1.21 16 24 H 0.08 2.39 8.03 -2.39 -0.02 2.37 16 25 H 0.10 2.50 3.48 -2.39 -0.01 2.50 16 26 H 0.05 2.22 7.13 -2.39 -0.02 2.21 16 27 H 0.02 0.83 6.78 -2.38 -0.02 0.82 16 28 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 29 H 0.39 11.23 8.72 -74.06 -0.65 10.59 16 30 H 0.08 2.65 8.06 -2.39 -0.02 2.63 16 31 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.12 1.69 7.66 -2.39 -0.02 1.67 16 Total: -1.00 -76.43 281.41 2.63 -73.80 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.40 Total: 18.75 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 3.50 Total: -4.88 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -1.74 Total: -85.60 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -1.42 Total: -48.84 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Total: -76.43 2.63 -73.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596891576.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.669 kcal (2) G-P(sol) polarization free energy of solvation -76.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds