Wall clock time and date at job start Thu Apr 9 2020 11:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.52880 * 2 1 4 4 C 1.53099 * 109.48809 * 239.91021 * 2 1 3 5 5 C 1.53126 * 109.15071 * 182.39661 * 4 2 1 6 6 C 1.53039 * 109.28009 * 57.65227 * 5 4 2 7 7 H 1.09008 * 109.45528 * 60.82642 * 6 5 4 8 8 C 1.52996 * 109.46366 * 180.80213 * 6 5 4 9 9 O 1.42900 * 109.46976 * 55.05428 * 8 6 5 10 10 N 1.46854 * 109.52227 * 300.82107 * 6 5 4 11 11 C 1.46898 * 110.99958 * 185.83752 * 10 6 5 12 12 C 1.50703 * 109.47292 * 301.83688 * 11 10 6 13 13 H 1.08003 * 119.99668 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00310 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99910 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00194 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46784 * 90.00167 * 16 14 12 18 18 H 1.48497 * 109.47267 * 209.99841 * 16 14 12 19 19 H 1.48493 * 109.46934 * 330.00587 * 16 14 12 20 20 C 1.46847 * 111.19790 * 61.74204 * 10 6 5 21 21 H 1.08995 * 109.46994 * 299.90035 * 1 2 3 22 22 H 1.08995 * 109.46862 * 59.90149 * 1 2 3 23 23 H 1.08999 * 109.46201 * 179.89981 * 1 2 3 24 24 H 1.09001 * 109.46793 * 180.09888 * 3 2 1 25 25 H 1.09001 * 109.47310 * 300.09590 * 3 2 1 26 26 H 1.08996 * 109.47225 * 60.10186 * 3 2 1 27 27 H 1.08990 * 109.52931 * 62.49409 * 4 2 1 28 28 H 1.09002 * 109.57693 * 302.32940 * 4 2 1 29 29 H 1.08994 * 109.50076 * 297.71308 * 5 4 2 30 30 H 1.08998 * 109.53581 * 177.61293 * 5 4 2 31 31 H 1.09002 * 109.47022 * 175.05155 * 8 6 5 32 32 H 1.08996 * 109.47101 * 295.05478 * 8 6 5 33 33 H 0.96701 * 114.00123 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47176 * 61.83333 * 11 10 6 35 35 H 1.08995 * 109.47485 * 181.83359 * 11 10 6 36 36 H 0.96993 * 120.00246 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.46481 * 58.27472 * 20 10 6 38 38 H 1.08994 * 109.46283 * 178.25325 * 20 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0415 1.4420 0.0000 4 6 2.0408 -0.7236 -1.2488 5 6 3.5709 -0.7716 -1.2110 6 6 4.0229 -1.4727 0.0720 7 1 3.6373 -2.4922 0.0838 8 6 5.5517 -1.5053 0.1237 9 8 6.0611 -0.1767 -0.0084 10 7 3.5093 -0.7419 1.2377 11 6 4.0375 -1.3057 2.4871 12 6 3.6612 -2.7620 2.5797 13 1 3.0867 -3.2226 1.7895 14 6 4.0503 -3.5065 3.6730 15 7 4.7503 -2.9458 4.6349 16 14 3.5832 -5.3115 3.7880 17 1 4.6445 -6.1384 3.1594 18 1 3.4371 -5.6950 5.2152 19 1 2.2969 -5.5360 3.0809 20 6 2.0410 -0.7234 1.2481 21 1 -0.3633 0.5123 0.8908 22 1 -0.3633 0.5153 -0.8891 23 1 -0.3632 -1.0277 -0.0018 24 1 3.1316 1.4409 -0.0018 25 1 1.6773 1.9567 -0.8891 26 1 1.6802 1.9557 0.8909 27 1 1.7152 -0.1868 -2.1397 28 1 1.6449 -1.7389 -1.2702 29 1 3.9673 0.2435 -1.2300 30 1 3.9397 -1.3227 -2.0761 31 1 5.8741 -1.9250 1.0766 32 1 5.9297 -2.1221 -0.6916 33 1 7.0262 -0.1213 0.0161 34 1 5.1232 -1.2096 2.4987 35 1 3.6160 -0.7669 3.3356 36 1 5.0237 -3.4694 5.4042 37 1 1.6649 -1.7464 1.2544 38 1 1.6907 -0.2021 2.1389 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598648779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:45 Heat of formation + Delta-G solvation = -63.089308 kcal Electronic energy + Delta-G solvation = -17313.496314 eV Core-core repulsion = 14769.191350 eV Total energy + Delta-G solvation = -2544.304964 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -39.23152 -36.14297 -34.40446 -32.41348 -31.34569 -27.55296 -26.89173 -26.68994 -24.09148 -23.21091 -21.60903 -19.41210 -18.06773 -16.59091 -16.15734 -15.11483 -14.85468 -14.30101 -14.12489 -13.66160 -13.50486 -12.84507 -12.70587 -12.43020 -11.92218 -11.74535 -11.61536 -11.42881 -11.26611 -11.03259 -10.84881 -10.65823 -10.36321 -10.19072 -10.14769 -9.92955 -9.68704 -9.52336 -9.39896 -8.98354 -8.40643 -7.00414 -6.01098 -4.11708 3.25116 3.32759 3.35525 4.39529 4.95362 5.03869 5.17375 5.27904 5.33711 5.41257 5.66664 5.83405 5.93558 5.99089 6.01618 6.09689 6.14315 6.26773 6.31338 6.36741 6.42386 6.47564 6.56364 6.62444 6.72227 6.83355 6.85762 6.96344 7.13817 7.36116 7.57805 7.93502 8.15288 8.26704 8.35483 8.45266 9.01134 9.55386 11.02183 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025518 B = 0.009827 C = 0.008367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.992960 B = 2848.562890 C = 3345.827439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.066 4.066 3 C -0.129 4.129 4 C -0.106 4.106 5 C -0.110 4.110 6 C 0.098 3.902 7 H 0.052 0.948 8 C 0.082 3.918 9 O -0.560 6.560 10 N -0.523 5.523 11 C 0.185 3.815 12 C -0.548 4.548 13 H 0.055 0.945 14 C 0.065 3.935 15 N -0.890 5.890 16 Si 0.885 3.115 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.077 3.923 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.035 0.965 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.363 0.637 34 H 0.036 0.964 35 H 0.027 0.973 36 H 0.262 0.738 37 H 0.032 0.968 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.636 4.229 -9.975 11.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.066 4.066 3 C -0.186 4.186 4 C -0.144 4.144 5 C -0.148 4.148 6 C -0.011 4.011 7 H 0.069 0.931 8 C 0.004 3.996 9 O -0.363 6.363 10 N -0.247 5.247 11 C 0.060 3.940 12 C -0.588 4.588 13 H 0.073 0.927 14 C -0.137 4.137 15 N -0.529 5.529 16 Si 0.713 3.287 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.052 4.052 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.094 0.906 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.207 0.793 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.033 4.819 -9.857 11.384 hybrid contribution 0.041 -2.275 0.373 2.306 sum -2.992 2.545 -9.485 10.266 Atomic orbital electron populations 1.21827 0.95556 1.01203 1.01024 1.20631 0.93950 0.96339 0.95726 1.21750 1.03013 0.94306 0.99533 1.21607 0.96324 0.99566 0.96906 1.21597 0.94739 1.02077 0.96357 1.21403 0.92426 0.96021 0.91236 0.93060 1.22307 0.94437 0.83052 0.99786 1.86559 1.24363 1.28645 1.96747 1.62361 1.06001 1.53001 1.03367 1.19785 0.96108 0.92217 0.85896 1.21798 1.34941 0.96674 1.05355 0.92674 1.24955 0.94986 0.98115 0.95660 1.69946 1.37427 1.36225 1.09260 0.86703 0.78895 0.85796 0.77286 1.20694 1.21155 1.20010 1.21877 0.89576 0.98075 0.95657 0.92870 0.93266 0.93121 0.90572 0.94545 0.93612 0.92902 0.92889 0.90427 0.93247 0.91564 0.95306 0.79309 0.94603 0.95461 0.92867 0.94933 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.48 37.16 0.32 -1.62 16 2 C -0.07 -1.07 0.77 -154.43 -0.12 -1.19 16 3 C -0.13 -2.03 8.04 37.16 0.30 -1.73 16 4 C -0.11 -1.66 4.79 -26.62 -0.13 -1.79 16 5 C -0.11 -1.85 4.83 -26.65 -0.13 -1.98 16 6 C 0.10 1.95 1.78 -67.72 -0.12 1.83 16 7 H 0.05 1.11 6.57 -51.92 -0.34 0.77 16 8 C 0.08 1.54 6.29 37.16 0.23 1.78 16 9 O -0.56 -9.88 12.72 -35.23 -0.45 -10.33 16 10 N -0.52 -11.36 3.93 -228.12 -0.90 -12.26 16 11 C 0.19 4.77 4.58 -4.98 -0.02 4.75 16 12 C -0.55 -14.87 7.62 -34.44 -0.26 -15.13 16 13 H 0.06 1.49 5.84 -52.48 -0.31 1.19 16 14 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 15 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 16 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 C 0.08 1.54 3.86 -3.84 -0.01 1.53 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.08 1.35 6.01 -51.93 -0.31 1.04 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.37 5.97 -51.93 -0.31 1.06 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.43 5.98 -51.93 -0.31 1.12 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.36 4.70 9.12 45.56 0.42 5.11 16 34 H 0.04 0.98 6.21 -51.93 -0.32 0.66 16 35 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.03 0.71 7.03 -51.93 -0.37 0.34 16 38 H 0.06 1.29 8.06 -51.93 -0.42 0.87 16 LS Contribution 287.73 15.07 4.34 4.34 Total: -1.00 -29.29 287.73 -6.97 -36.26 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.63 Total: 2.79 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -0.05 Total: -11.84 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.16 Total: -37.49 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -0.45 Total: -10.33 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.29 -6.97 -36.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598648779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.828 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds