Wall clock time and date at job start Thu Apr 9 2020 11:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.52880 * 2 1 4 4 C 1.53099 * 109.48809 * 239.91021 * 2 1 3 5 5 C 1.53126 * 109.15071 * 182.39661 * 4 2 1 6 6 C 1.53039 * 109.28009 * 57.65227 * 5 4 2 7 7 H 1.09008 * 109.45528 * 60.82642 * 6 5 4 8 8 C 1.52996 * 109.46366 * 180.80213 * 6 5 4 9 9 O 1.42900 * 109.46976 * 55.05428 * 8 6 5 10 10 N 1.46854 * 109.52227 * 300.82107 * 6 5 4 11 11 C 1.46898 * 110.99958 * 185.83752 * 10 6 5 12 12 C 1.50703 * 109.47292 * 301.83688 * 11 10 6 13 13 H 1.08003 * 119.99668 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00310 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99910 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00194 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46784 * 90.00167 * 16 14 12 18 18 H 1.48497 * 109.47267 * 209.99841 * 16 14 12 19 19 H 1.48493 * 109.46934 * 330.00587 * 16 14 12 20 20 C 1.46847 * 111.19790 * 61.74204 * 10 6 5 21 21 H 1.08995 * 109.46994 * 299.90035 * 1 2 3 22 22 H 1.08995 * 109.46862 * 59.90149 * 1 2 3 23 23 H 1.08999 * 109.46201 * 179.89981 * 1 2 3 24 24 H 1.09001 * 109.46793 * 180.09888 * 3 2 1 25 25 H 1.09001 * 109.47310 * 300.09590 * 3 2 1 26 26 H 1.08996 * 109.47225 * 60.10186 * 3 2 1 27 27 H 1.08990 * 109.52931 * 62.49409 * 4 2 1 28 28 H 1.09002 * 109.57693 * 302.32940 * 4 2 1 29 29 H 1.08994 * 109.50076 * 297.71308 * 5 4 2 30 30 H 1.08998 * 109.53581 * 177.61293 * 5 4 2 31 31 H 1.09002 * 109.47022 * 175.05155 * 8 6 5 32 32 H 1.08996 * 109.47101 * 295.05478 * 8 6 5 33 33 H 0.96701 * 114.00123 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47176 * 61.83333 * 11 10 6 35 35 H 1.08995 * 109.47485 * 181.83359 * 11 10 6 36 36 H 0.96993 * 120.00246 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.46481 * 58.27472 * 20 10 6 38 38 H 1.08994 * 109.46283 * 178.25325 * 20 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0415 1.4420 0.0000 4 6 2.0408 -0.7236 -1.2488 5 6 3.5709 -0.7716 -1.2110 6 6 4.0229 -1.4727 0.0720 7 1 3.6373 -2.4922 0.0838 8 6 5.5517 -1.5053 0.1237 9 8 6.0611 -0.1767 -0.0084 10 7 3.5093 -0.7419 1.2377 11 6 4.0375 -1.3057 2.4871 12 6 3.6612 -2.7620 2.5797 13 1 3.0867 -3.2226 1.7895 14 6 4.0503 -3.5065 3.6730 15 7 4.7503 -2.9458 4.6349 16 14 3.5832 -5.3115 3.7880 17 1 4.6445 -6.1384 3.1594 18 1 3.4371 -5.6950 5.2152 19 1 2.2969 -5.5360 3.0809 20 6 2.0410 -0.7234 1.2481 21 1 -0.3633 0.5123 0.8908 22 1 -0.3633 0.5153 -0.8891 23 1 -0.3632 -1.0277 -0.0018 24 1 3.1316 1.4409 -0.0018 25 1 1.6773 1.9567 -0.8891 26 1 1.6802 1.9557 0.8909 27 1 1.7152 -0.1868 -2.1397 28 1 1.6449 -1.7389 -1.2702 29 1 3.9673 0.2435 -1.2300 30 1 3.9397 -1.3227 -2.0761 31 1 5.8741 -1.9250 1.0766 32 1 5.9297 -2.1221 -0.6916 33 1 7.0262 -0.1213 0.0161 34 1 5.1232 -1.2096 2.4987 35 1 3.6160 -0.7669 3.3356 36 1 5.0237 -3.4694 5.4042 37 1 1.6649 -1.7464 1.2544 38 1 1.6907 -0.2021 2.1389 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598648779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:44 Heat of formation + Delta-G solvation = -84.016552 kcal Electronic energy + Delta-G solvation = -17314.403788 eV Core-core repulsion = 14769.191350 eV Total energy + Delta-G solvation = -2545.212438 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.75724 -37.56266 -36.13433 -34.31114 -32.93368 -28.98856 -28.77032 -27.98792 -25.91372 -24.70461 -23.28969 -21.05148 -19.59087 -18.29689 -17.91540 -16.86501 -16.57474 -15.96474 -15.48774 -15.16135 -14.99208 -14.47987 -14.24908 -14.07043 -13.52589 -13.24593 -13.08092 -12.96480 -12.80393 -12.63443 -12.54218 -12.20286 -12.05715 -11.97216 -11.78638 -11.58444 -11.28441 -10.96510 -10.87327 -10.65479 -10.46147 -8.87859 -8.12346 -6.34859 1.33911 1.35058 1.45198 2.35559 3.09019 3.34494 3.64123 3.84766 4.01337 4.06329 4.29358 4.41694 4.55068 4.58336 4.71092 4.77849 4.86581 4.88539 4.98972 5.00398 5.08830 5.11063 5.14672 5.18704 5.32650 5.32958 5.36183 5.43306 5.51153 5.56688 5.77901 5.80740 6.09571 6.35652 6.66507 6.89335 7.06886 7.37021 8.87001 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025518 B = 0.009827 C = 0.008367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.992960 B = 2848.562890 C = 3345.827439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.063 4.063 3 C -0.123 4.123 4 C -0.104 4.104 5 C -0.101 4.101 6 C 0.092 3.908 7 H 0.030 0.970 8 C 0.089 3.911 9 O -0.569 6.569 10 N -0.522 5.522 11 C 0.202 3.798 12 C -0.551 4.551 13 H 0.053 0.947 14 C 0.013 3.987 15 N -0.925 5.925 16 Si 0.953 3.047 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.270 1.270 20 C 0.078 3.922 21 H 0.052 0.948 22 H 0.075 0.925 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.058 0.942 33 H 0.384 0.616 34 H 0.013 0.987 35 H -0.009 1.009 36 H 0.264 0.736 37 H 0.010 0.990 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.551 4.024 -12.200 13.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.063 4.063 3 C -0.180 4.180 4 C -0.142 4.142 5 C -0.139 4.139 6 C -0.016 4.016 7 H 0.048 0.952 8 C 0.011 3.989 9 O -0.375 6.375 10 N -0.246 5.246 11 C 0.075 3.925 12 C -0.590 4.590 13 H 0.071 0.929 14 C -0.186 4.186 15 N -0.565 5.565 16 Si 0.778 3.222 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.194 1.194 20 C -0.051 4.051 21 H 0.071 0.929 22 H 0.094 0.906 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.231 0.769 34 H 0.031 0.969 35 H 0.010 0.990 36 H 0.073 0.927 37 H 0.028 0.972 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.939 4.624 -12.103 13.542 hybrid contribution 0.371 -2.152 1.071 2.432 sum -3.568 2.472 -11.032 11.856 Atomic orbital electron populations 1.21787 0.93408 1.01581 1.02361 1.20631 0.95635 0.96176 0.93877 1.21674 1.01490 0.94063 1.00748 1.21622 0.95207 0.99831 0.97509 1.21533 0.95817 1.01552 0.94951 1.21533 0.93165 0.95084 0.91864 0.95181 1.22122 0.94025 0.83868 0.98931 1.86498 1.26537 1.27856 1.96592 1.62317 1.07092 1.52749 1.02434 1.19399 0.94545 0.91607 0.86915 1.21957 1.34531 0.97288 1.05272 0.92879 1.25787 0.94889 1.02672 0.95287 1.70072 1.38528 1.38022 1.09890 0.85630 0.78835 0.80312 0.77385 1.19672 1.20748 1.19450 1.21927 0.88421 0.97201 0.97516 0.92894 0.90585 0.93276 0.92820 0.91691 0.94021 0.89789 0.93077 0.90835 0.91023 0.95341 0.92368 0.76881 0.96858 0.99041 0.92688 0.97161 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 8.48 71.98 0.61 -2.79 16 2 C -0.06 -1.93 0.77 -52.13 -0.04 -1.98 16 3 C -0.12 -3.62 8.04 71.98 0.58 -3.04 16 4 C -0.10 -2.94 4.79 30.67 0.15 -2.80 16 5 C -0.10 -3.16 4.83 30.65 0.15 -3.02 16 6 C 0.09 3.65 1.78 44.94 0.08 3.73 16 7 H 0.03 1.32 6.57 -2.38 -0.02 1.30 16 8 C 0.09 3.32 6.29 71.98 0.45 3.78 16 9 O -0.57 -19.64 12.72 -148.98 -1.89 -21.54 16 10 N -0.52 -23.30 3.93 -875.64 -3.44 -26.74 16 11 C 0.20 10.94 4.58 85.56 0.39 11.33 16 12 C -0.55 -30.85 7.62 25.60 0.20 -30.65 16 13 H 0.05 2.95 5.84 -2.91 -0.02 2.93 16 14 C 0.01 0.74 5.46 84.65 0.46 1.20 16 15 N -0.93 -55.53 13.29 21.45 0.28 -55.25 16 16 Si 0.95 44.14 29.54 68.60 2.03 46.16 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 C 0.08 3.18 3.86 86.32 0.33 3.52 16 21 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.05 1.83 6.01 -2.39 -0.01 1.82 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 2.41 5.97 -2.39 -0.01 2.40 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.03 1.28 5.98 -2.39 -0.01 1.26 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.38 9.53 9.12 -74.06 -0.68 8.85 16 34 H 0.01 0.78 6.21 -2.39 -0.01 0.76 16 35 H -0.01 -0.52 8.06 -2.39 -0.02 -0.54 16 36 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 37 H 0.01 0.46 7.03 -2.39 -0.02 0.44 16 38 H 0.04 1.93 8.06 -2.39 -0.02 1.91 16 Total: -1.00 -64.50 287.73 0.69 -63.81 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.35 Total: 14.27 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 3.36 Total: -20.71 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -3.15 Total: -81.98 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -1.89 Total: -21.54 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -64.50 0.69 -63.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598648779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.210 kcal (2) G-P(sol) polarization free energy of solvation -64.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds