Wall clock time and date at job start Thu Apr 9 2020 12:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37095 * 120.00318 * 2 1 4 4 H 1.08003 * 119.99951 * 204.39604 * 3 2 1 5 5 C 1.38948 * 119.99940 * 24.39981 * 3 2 1 6 6 N 1.31417 * 119.99927 * 12.65062 * 5 3 2 7 7 Si 1.86801 * 120.00008 * 192.65411 * 5 3 2 8 8 H 1.48501 * 109.47067 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47170 * 119.99910 * 7 5 3 10 10 H 1.48501 * 109.47096 * 239.99887 * 7 5 3 11 11 C 1.34778 * 119.99721 * 180.02562 * 2 1 3 12 12 O 1.21287 * 120.00277 * 179.97438 * 11 2 1 13 13 C 1.50704 * 120.00001 * 0.02562 * 11 2 1 14 14 C 1.52998 * 109.47152 * 180.02562 * 13 11 2 15 15 C 1.52998 * 109.47170 * 179.97438 * 14 13 11 16 16 O 1.42899 * 112.85185 * 53.80371 * 15 14 13 17 17 C 1.53782 * 113.61451 * 282.49794 * 15 14 13 18 18 C 1.53785 * 87.08126 * 220.01978 * 17 15 14 19 19 C 1.53779 * 87.08174 * 25.42960 * 18 17 15 20 20 H 1.08999 * 109.47259 * 265.86162 * 1 2 3 21 21 H 1.09001 * 109.46748 * 25.86325 * 1 2 3 22 22 H 1.08996 * 109.47429 * 145.85531 * 1 2 3 23 23 H 0.96996 * 119.99724 * 180.02562 * 6 5 3 24 24 H 1.09000 * 109.47526 * 59.99844 * 13 11 2 25 25 H 1.09005 * 109.46764 * 299.99627 * 13 11 2 26 26 H 1.09006 * 109.47470 * 59.99393 * 14 13 11 27 27 H 1.09000 * 109.47399 * 299.99980 * 14 13 11 28 28 H 0.96703 * 113.99935 * 309.67335 * 16 15 14 29 29 H 1.08999 * 113.61264 * 334.56195 * 17 15 14 30 30 H 1.08999 * 113.61223 * 105.47161 * 17 15 14 31 31 H 1.09008 * 113.61117 * 270.88260 * 18 17 15 32 32 H 1.08996 * 113.62032 * 139.98404 * 18 17 15 33 33 H 1.09003 * 113.61998 * 220.01677 * 19 18 17 34 34 H 1.09005 * 113.61050 * 89.11716 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.1583 1.2289 -0.3863 5 6 1.5489 2.3368 0.4971 6 7 0.4348 2.2490 1.1885 7 14 2.3237 4.0072 0.1825 8 1 3.5639 3.8351 -0.6159 9 1 1.3685 4.8629 -0.5661 10 1 2.6544 4.6516 1.4789 11 6 2.1388 -1.1672 -0.0005 12 8 3.3517 -1.1674 -0.0010 13 6 1.3853 -2.4723 -0.0017 14 6 2.3794 -3.6353 -0.0014 15 6 1.6144 -4.9603 -0.0020 16 8 0.6639 -5.0518 -1.0651 17 6 1.0417 -5.3415 1.3734 18 6 1.4554 -6.7885 1.0570 19 6 2.5218 -6.1957 0.1210 20 1 -0.3634 -0.0742 1.0250 21 1 -0.3633 0.9248 -0.4483 22 1 -0.3634 -0.8505 -0.5768 23 1 0.0147 3.0516 1.5352 24 1 0.7589 -2.5295 -0.8919 25 1 0.7583 -2.5306 0.8881 26 1 3.0055 -3.5780 0.8890 27 1 3.0068 -3.5772 -0.8909 28 1 0.0748 -4.2879 -1.1329 29 1 1.5871 -4.9045 2.2098 30 1 -0.0367 -5.2027 1.4510 31 1 0.6859 -7.3587 0.5365 32 1 1.8720 -7.3205 1.9122 33 1 2.6385 -6.7465 -0.8124 34 1 3.4719 -5.9921 0.6151 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601024109.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:14 Heat of formation + Delta-G solvation = -66.954847 kcal Electronic energy + Delta-G solvation = -16083.739062 eV Core-core repulsion = 13403.433381 eV Total energy + Delta-G solvation = -2680.305681 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.73472 -38.25849 -34.73211 -34.54525 -32.11168 -31.36010 -26.74777 -25.89365 -25.50603 -24.03615 -21.71675 -19.57568 -18.66865 -16.96147 -16.65559 -15.79594 -15.10345 -14.98027 -14.86711 -14.21363 -13.98199 -13.42760 -13.18053 -12.53291 -12.26743 -12.01892 -11.59164 -11.35614 -11.32299 -11.23302 -11.03581 -10.87051 -10.85246 -10.60293 -10.32942 -10.23153 -9.95268 -9.45636 -9.01238 -8.37527 -7.64952 -6.32067 -3.88093 3.15224 3.25518 3.32657 3.91169 4.13125 4.15213 4.58826 4.67845 4.83956 4.94280 5.11112 5.12892 5.54116 5.56882 5.66336 5.73817 5.77835 5.90819 5.92269 6.02284 6.07409 6.26360 6.35505 6.40899 6.54588 6.63533 6.84533 7.18403 7.57294 7.74829 8.16123 8.50079 9.20312 9.44145 10.00635 10.73189 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.059401 B = 0.005709 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.261982 B = 4902.959047 C = 5078.499994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.449 5.449 3 C -0.306 4.306 4 H 0.097 0.903 5 C 0.029 3.971 6 N -0.884 5.884 7 Si 0.925 3.075 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.447 3.553 12 O -0.591 6.591 13 C -0.132 4.132 14 C -0.114 4.114 15 C 0.107 3.893 16 O -0.547 6.547 17 C -0.166 4.166 18 C -0.136 4.136 19 C -0.127 4.127 20 H 0.051 0.949 21 H 0.073 0.927 22 H 0.025 0.975 23 H 0.266 0.734 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.378 0.622 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.900 -11.563 -0.659 11.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.168 5.168 3 C -0.434 4.434 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.524 5.524 7 Si 0.752 3.248 8 H -0.192 1.192 9 H -0.207 1.207 10 H -0.208 1.208 11 C 0.236 3.764 12 O -0.476 6.476 13 C -0.173 4.173 14 C -0.153 4.153 15 C 0.066 3.934 16 O -0.354 6.354 17 C -0.204 4.204 18 C -0.173 4.173 19 C -0.165 4.165 20 H 0.069 0.931 21 H 0.092 0.908 22 H 0.043 0.957 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.227 0.773 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.152 -11.966 -0.667 12.176 hybrid contribution -0.266 1.537 0.119 1.564 sum -2.418 -10.429 -0.549 10.720 Atomic orbital electron populations 1.21458 0.81351 0.99828 1.00490 1.43607 1.05421 1.04868 1.62935 1.19692 1.00574 0.84267 1.38837 0.88496 1.25344 0.96654 1.00138 0.95212 1.70001 1.19332 1.29470 1.33560 0.85880 0.79194 0.81524 0.78216 1.19236 1.20675 1.20752 1.20058 0.88065 0.84880 0.83430 1.90505 1.14099 1.87238 1.55741 1.21509 0.99055 0.94430 1.02272 1.21796 0.97877 0.91465 1.04120 1.22286 0.89792 0.94781 0.86544 1.86409 1.49379 1.47226 1.52393 1.23627 1.01605 0.96875 0.98265 1.22755 0.98891 0.96409 0.99270 1.23014 0.97429 0.95783 1.00226 0.93081 0.90795 0.95665 0.92350 0.90832 0.90326 0.90318 0.90789 0.77289 0.89299 0.91156 0.90141 0.91681 0.90893 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.49 8.44 59.85 0.51 2.99 16 2 N -0.45 -11.58 3.01 -122.19 -0.37 -11.95 16 3 C -0.31 -8.63 9.24 -14.94 -0.14 -8.77 16 4 H 0.10 2.88 7.45 -52.48 -0.39 2.48 16 5 C 0.03 0.78 5.04 -17.47 -0.09 0.69 16 6 N -0.88 -23.74 10.83 55.50 0.60 -23.14 16 7 Si 0.93 20.89 29.57 -169.99 -5.03 15.87 16 8 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 C 0.45 10.90 7.63 -10.98 -0.08 10.81 16 12 O -0.59 -16.48 15.69 5.55 0.09 -16.40 16 13 C -0.13 -2.34 3.87 -27.88 -0.11 -2.45 16 14 C -0.11 -1.87 4.14 -26.73 -0.11 -1.98 16 15 C 0.11 1.45 1.38 -89.81 -0.12 1.32 16 16 O -0.55 -7.48 13.39 -35.23 -0.47 -7.95 16 17 C -0.17 -2.00 7.32 -25.92 -0.19 -2.19 16 18 C -0.14 -1.49 8.02 -25.92 -0.21 -1.70 16 19 C -0.13 -1.54 7.47 -25.92 -0.19 -1.74 16 20 H 0.05 1.15 7.83 -51.93 -0.41 0.75 16 21 H 0.07 1.74 6.80 -51.93 -0.35 1.38 16 22 H 0.02 0.45 6.61 -51.93 -0.34 0.10 16 23 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 24 H 0.07 1.13 6.02 -51.93 -0.31 0.82 16 25 H 0.08 1.29 8.02 -51.93 -0.42 0.88 16 26 H 0.08 1.35 8.01 -51.93 -0.42 0.93 16 27 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 28 H 0.38 4.21 7.18 45.56 0.33 4.54 16 29 H 0.09 1.07 8.03 -51.93 -0.42 0.65 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 279.40 15.07 4.21 4.21 Total: -1.00 -31.64 279.40 -6.10 -37.74 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.40 Total: 4.62 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -0.74 Total: -3.00 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.23 Total: -35.09 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.38 Total: -24.35 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.64 -6.10 -37.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601024109.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.215 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds