Wall clock time and date at job start Thu Apr 9 2020 12:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.46496 * 119.99759 * 90.00495 * 3 2 1 5 5 C 1.50695 * 109.47390 * 89.99689 * 4 3 2 6 6 H 1.08001 * 120.00425 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99997 * 179.97438 * 5 4 3 8 8 N 1.31507 * 119.99974 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99547 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47146 * 90.00221 * 9 7 5 11 11 H 1.48505 * 109.46836 * 209.99793 * 9 7 5 12 12 H 1.48493 * 109.47533 * 329.99811 * 9 7 5 13 13 C 1.34771 * 120.00084 * 270.00167 * 3 2 1 14 14 O 1.21283 * 120.00062 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00216 * 0.02562 * 13 3 2 16 16 H 1.08996 * 112.85047 * 50.33177 * 15 13 3 17 17 C 1.53779 * 113.61458 * 181.53170 * 15 13 3 18 18 C 1.53782 * 87.08188 * 139.98292 * 17 15 13 19 19 H 1.08997 * 113.61383 * 89.11383 * 18 17 15 20 20 O 1.42899 * 113.61147 * 219.93364 * 18 17 15 21 21 C 1.53782 * 113.61427 * 279.14093 * 15 13 3 22 22 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 23 23 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 24 24 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 26 26 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 27 27 H 1.09001 * 109.47057 * 210.00204 * 4 3 2 28 28 H 1.08999 * 109.47333 * 329.99764 * 4 3 2 29 29 H 0.96998 * 119.99696 * 179.97438 * 8 7 5 30 30 H 1.09004 * 113.61085 * 254.53012 * 17 15 13 31 31 H 1.08996 * 113.61736 * 25.34607 * 17 15 13 32 32 H 0.96707 * 113.99660 * 179.97438 * 20 18 17 33 33 H 1.08999 * 113.61547 * 334.56101 * 21 15 13 34 34 H 1.08994 * 113.61710 * 105.47259 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6858 1.8350 1.7037 6 1 4.3430 1.2309 1.0957 7 6 4.1495 2.3904 2.8775 8 7 3.3495 3.1264 3.6176 9 14 5.9139 2.0973 3.4162 10 1 6.7852 3.1628 2.8587 11 1 5.9892 2.1220 4.8992 12 1 6.3700 0.7744 2.9194 13 6 2.2429 2.0166 -1.1671 14 8 2.6476 3.1599 -1.1671 15 6 1.9912 1.3065 -2.4723 16 1 1.0065 0.8415 -2.5181 17 6 2.3307 2.1536 -3.7100 18 6 2.9085 0.8713 -4.3319 19 1 2.1750 0.2863 -4.8867 20 8 4.1170 1.0845 -5.0641 21 6 3.1351 0.3692 -2.8942 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.0956 3.1410 1.1385 28 1 1.5818 1.6877 2.0284 29 1 3.6756 3.5168 4.4435 30 1 1.4531 2.5351 -4.2321 31 1 3.0783 2.9238 -3.5203 32 1 4.4854 0.2815 -5.4574 33 1 4.1041 0.6497 -2.4815 34 1 2.9060 -0.6877 -2.7588 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602079515.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:17 Heat of formation + Delta-G solvation = -70.907459 kcal Electronic energy + Delta-G solvation = -16259.686275 eV Core-core repulsion = 13579.209196 eV Total energy + Delta-G solvation = -2680.477079 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.00458 -37.77055 -35.26205 -34.68433 -32.72493 -30.07160 -27.63511 -25.62949 -25.33777 -22.97159 -22.41372 -19.77183 -18.53188 -17.40189 -16.43158 -16.22829 -15.69664 -15.01399 -14.35127 -14.24418 -13.85686 -13.37005 -12.91400 -12.61827 -12.33471 -12.08213 -11.88035 -11.67226 -11.44239 -11.09910 -10.94078 -10.83050 -10.68135 -10.49105 -10.42592 -10.10314 -9.83989 -9.60306 -8.77621 -8.41155 -7.61659 -6.02044 -4.06557 3.32581 3.38057 3.39333 3.44946 3.89771 4.32533 4.47689 4.57478 4.77235 4.90250 4.91473 5.25758 5.33099 5.40642 5.46579 5.66766 5.71633 5.82449 5.87694 6.06483 6.10097 6.18615 6.25411 6.48465 6.51240 7.11358 7.48084 7.59810 7.64360 7.94914 8.26747 8.48619 8.93402 9.15772 9.58571 11.06061 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.026867 B = 0.007868 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.937830 B = 3558.040060 C = 4065.205182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.245 3.755 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.516 3.484 14 O -0.540 6.540 15 C -0.137 4.137 16 H 0.107 0.893 17 C -0.106 4.106 18 C 0.075 3.925 19 H 0.081 0.919 20 O -0.557 6.557 21 C -0.150 4.150 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.031 0.969 29 H 0.263 0.737 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.374 0.626 33 H 0.095 0.905 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.570 -9.521 -12.634 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.126 3.874 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.303 3.697 14 O -0.418 6.418 15 C -0.158 4.158 16 H 0.125 0.875 17 C -0.144 4.144 18 C 0.016 3.984 19 H 0.099 0.901 20 O -0.362 6.362 21 C -0.188 4.188 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.220 0.780 33 H 0.113 0.887 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.472 -8.184 -12.229 15.380 hybrid contribution 0.937 -0.855 0.370 1.321 sum -3.535 -9.038 -11.860 15.324 Atomic orbital electron populations 1.22231 0.96949 1.01295 1.02293 1.21415 0.93371 0.84367 1.02613 1.48218 1.63614 1.13193 1.07687 1.19258 0.96214 0.93636 0.78272 1.21444 0.96944 1.31807 1.06189 0.92523 1.24939 0.97824 0.94963 0.96415 1.69932 1.35607 1.33525 1.14384 0.86509 0.84834 0.78630 0.77517 1.20545 1.21144 1.19949 1.20011 0.78319 0.86653 0.84751 1.90660 1.45866 1.18151 1.87093 1.22524 1.00186 0.98936 0.94184 0.87457 1.22920 1.01258 0.96711 0.93505 1.23414 0.86654 0.98312 0.90005 0.90112 1.86585 1.40851 1.36994 1.71788 1.23621 0.99500 0.98821 0.96879 0.92070 0.93097 0.92260 0.91631 0.90131 0.93977 0.95079 0.92750 0.90810 0.87782 0.77959 0.88655 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.18 37.16 0.38 -1.90 16 2 C 0.11 1.73 5.84 -4.04 -0.02 1.70 16 3 N -0.60 -12.80 2.46 -175.06 -0.43 -13.23 16 4 C 0.25 6.54 5.16 -5.20 -0.03 6.51 16 5 C -0.52 -15.16 9.39 -34.44 -0.32 -15.48 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 9 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.52 11.02 7.20 -10.99 -0.08 10.94 16 14 O -0.54 -14.12 15.49 5.55 0.09 -14.03 16 15 C -0.14 -2.08 2.80 -90.96 -0.25 -2.33 16 16 H 0.11 1.34 6.96 -51.93 -0.36 0.97 16 17 C -0.11 -1.56 7.23 -25.92 -0.19 -1.75 16 18 C 0.08 0.89 5.21 -25.82 -0.13 0.76 16 19 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 20 O -0.56 -6.96 13.68 -35.23 -0.48 -7.44 16 21 C -0.15 -2.00 6.69 -25.82 -0.17 -2.18 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.05 0.64 7.24 -51.93 -0.38 0.27 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.89 5.66 -51.93 -0.29 0.60 16 26 H 0.08 1.36 8.07 -51.93 -0.42 0.95 16 27 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 28 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 1.88 7.45 -51.93 -0.39 1.49 16 32 H 0.37 2.77 9.12 45.56 0.42 3.18 16 33 H 0.09 1.54 8.09 -51.93 -0.42 1.12 16 34 H 0.07 0.79 7.60 -51.93 -0.39 0.39 16 LS Contribution 285.29 15.07 4.30 4.30 Total: -1.00 -34.67 285.29 -6.01 -40.68 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.28 Total: 0.87 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -0.92 Total: -2.07 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.31 Total: -39.50 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.40 Total: -21.47 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.67 -6.01 -40.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602079515.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.230 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds