Wall clock time and date at job start Thu Apr 9 2020 11:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 113.99707 * 2 1 4 4 H 1.09000 * 110.82260 * 26.66271 * 3 2 1 5 5 C 1.54890 * 110.75557 * 263.32379 * 3 2 1 6 6 C 1.54268 * 104.19984 * 203.74216 * 5 3 2 7 7 C 1.53885 * 106.59362 * 23.61471 * 6 5 3 8 8 C 1.54266 * 106.59763 * 359.97438 * 7 6 5 9 9 H 1.09002 * 110.48179 * 95.20509 * 8 7 6 10 10 C 1.52994 * 110.48483 * 217.71101 * 8 7 6 11 11 N 1.46503 * 109.47132 * 293.55127 * 10 8 7 12 12 C 1.34786 * 119.99926 * 180.02562 * 11 10 8 13 13 O 1.21686 * 119.99696 * 359.97438 * 12 11 10 14 14 C 1.46373 * 119.99966 * 179.97438 * 12 11 10 15 15 H 1.08002 * 119.99728 * 6.24178 * 14 12 11 16 16 C 1.40042 * 119.99893 * 186.24264 * 14 12 11 17 17 N 1.30671 * 119.99961 * 184.67122 * 16 14 12 18 18 Si 1.86802 * 120.00099 * 4.67753 * 16 14 12 19 19 H 1.48505 * 109.47216 * 179.97438 * 18 16 14 20 20 H 1.48503 * 109.46975 * 299.99476 * 18 16 14 21 21 H 1.48499 * 109.47526 * 59.99639 * 18 16 14 22 22 H 1.09004 * 109.47109 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47330 * 299.99946 * 1 2 3 24 24 H 1.08998 * 109.47137 * 60.00176 * 1 2 3 25 25 H 1.09007 * 110.48001 * 85.06604 * 5 3 2 26 26 H 1.08995 * 110.59959 * 322.48555 * 5 3 2 27 27 H 1.08995 * 110.03260 * 264.33402 * 6 5 3 28 28 H 1.08998 * 110.07484 * 142.91619 * 6 5 3 29 29 H 1.08995 * 110.02843 * 240.71262 * 7 6 5 30 30 H 1.08998 * 110.07178 * 119.30391 * 7 6 5 31 31 H 1.09002 * 109.47090 * 173.55437 * 10 8 7 32 32 H 1.09004 * 109.47344 * 53.55108 * 10 8 7 33 33 H 0.96996 * 120.00087 * 359.97438 * 11 10 8 34 34 H 0.96993 * 120.00036 * 354.90301 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3360 2.0297 0.4572 5 6 2.3872 1.7384 -1.4386 6 6 3.4948 2.7934 -1.2382 7 6 4.1257 2.5125 0.1370 8 6 3.3789 1.2971 0.7244 9 1 3.9206 0.3761 0.5091 10 6 3.1879 1.4641 2.2332 11 7 4.4927 1.4231 2.8981 12 6 4.5707 1.5504 4.2377 13 8 3.5573 1.6998 4.8947 14 6 5.8742 1.5089 4.9021 15 1 6.7794 1.4778 4.3138 16 6 5.9477 1.5095 6.3006 17 7 7.1107 1.5647 6.8938 18 14 4.3830 1.4312 7.3181 19 1 4.7303 1.4444 8.7619 20 1 3.5286 2.6043 7.0033 21 1 3.6463 0.1822 6.9981 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.5268 2.1795 -1.9420 26 1 2.7670 0.8897 -2.0073 27 1 3.0641 3.7945 -1.2539 28 1 4.2477 2.6987 -2.0206 29 1 4.0011 3.3774 0.7885 30 1 5.1846 2.2809 0.0226 31 1 2.5617 0.6562 2.6117 32 1 2.7072 2.4214 2.4349 33 1 5.3003 1.3036 2.3745 34 1 7.9252 1.5306 6.3683 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614014607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:49 Heat of formation + Delta-G solvation = -120.337623 kcal Electronic energy + Delta-G solvation = -15936.289816 eV Core-core repulsion = 13253.669284 eV Total energy + Delta-G solvation = -2682.620532 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.33536 -37.68343 -36.16085 -33.46817 -32.76517 -29.60950 -28.32694 -26.54477 -25.95883 -23.54046 -20.84357 -19.95916 -19.56285 -17.95632 -17.03594 -15.83769 -15.13930 -15.08806 -14.62903 -14.59763 -14.13920 -13.63711 -13.34303 -12.96984 -12.61171 -12.40377 -12.04840 -11.91538 -11.43043 -11.30809 -11.20128 -10.70749 -10.61254 -10.38389 -10.29741 -10.15119 -9.55188 -9.16708 -8.93081 -7.89403 -7.84293 -6.94541 -4.87899 3.62900 3.69037 3.72821 4.11137 4.36198 4.40238 4.51965 4.60015 4.82868 4.91594 5.10559 5.24477 5.28911 5.33820 5.44365 5.50345 5.53382 5.58000 5.60156 5.72242 5.82000 5.96075 6.03903 6.14245 6.23191 6.43570 6.48840 7.20009 7.55018 7.75194 7.80793 8.15542 8.88484 9.13712 10.12142 10.37836 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.039049 B = 0.006343 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.874363 B = 4413.415845 C = 4926.488675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.089 3.911 4 H 0.072 0.928 5 C -0.143 4.143 6 C -0.121 4.121 7 C -0.119 4.119 8 C -0.099 4.099 9 H 0.087 0.913 10 C 0.138 3.862 11 N -0.755 5.755 12 C 0.552 3.448 13 O -0.620 6.620 14 C -0.599 4.599 15 H 0.069 0.931 16 C 0.060 3.940 17 N -0.836 5.836 18 Si 1.131 2.869 19 H -0.323 1.323 20 H -0.282 1.282 21 H -0.292 1.292 22 H 0.084 0.916 23 H 0.043 0.957 24 H 0.038 0.962 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.386 0.614 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.707 0.255 -16.550 18.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.030 3.970 4 H 0.090 0.910 5 C -0.181 4.181 6 C -0.159 4.159 7 C -0.157 4.157 8 C -0.118 4.118 9 H 0.106 0.894 10 C 0.013 3.987 11 N -0.406 5.406 12 C 0.360 3.640 13 O -0.513 6.513 14 C -0.636 4.636 15 H 0.087 0.913 16 C -0.157 4.157 17 N -0.463 5.463 18 Si 0.964 3.036 19 H -0.255 1.255 20 H -0.209 1.209 21 H -0.219 1.219 22 H 0.102 0.898 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.219 0.781 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.780 0.235 -14.637 17.605 hybrid contribution 0.975 0.109 -2.148 2.362 sum -8.805 0.343 -16.785 18.957 Atomic orbital electron populations 1.22775 0.81354 1.02616 0.99841 1.87920 1.19427 1.27565 1.94843 1.23154 0.94440 0.84526 0.94842 0.90980 1.22787 0.98701 0.99302 0.97275 1.22041 0.97678 0.98620 0.97569 1.22157 0.99704 0.97993 0.95864 1.22279 0.95098 0.99527 0.94936 0.89450 1.20999 0.87785 1.00720 0.89163 1.45718 1.06783 1.80045 1.08054 1.18451 0.90319 0.75369 0.79900 1.90134 1.38890 1.59686 1.62611 1.22047 0.91738 1.55536 0.94247 0.91253 1.27149 1.04090 0.88179 0.96284 1.70653 0.99045 1.36152 1.40466 0.82364 0.71541 0.79027 0.70637 1.25499 1.20875 1.21916 0.89790 0.93820 0.94382 0.91813 0.90693 0.91782 0.91639 0.90970 0.91252 0.92719 0.93133 0.78139 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.85 101.05 1.10 1.41 16 2 O -0.38 -5.18 10.49 -35.23 -0.37 -5.55 16 3 C 0.09 1.12 2.81 -24.75 -0.07 1.05 16 4 H 0.07 0.88 7.75 -51.93 -0.40 0.48 16 5 C -0.14 -1.49 6.55 -25.07 -0.16 -1.65 16 6 C -0.12 -1.23 6.80 -25.61 -0.17 -1.41 16 7 C -0.12 -1.49 6.05 -25.61 -0.15 -1.64 16 8 C -0.10 -1.42 2.65 -88.98 -0.24 -1.66 16 9 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 10 C 0.14 2.58 4.99 -4.04 -0.02 2.56 16 11 N -0.75 -16.46 5.39 -61.72 -0.33 -16.79 16 12 C 0.55 15.12 7.57 -12.98 -0.10 15.03 16 13 O -0.62 -18.42 12.07 5.20 0.06 -18.35 16 14 C -0.60 -17.35 9.96 -35.64 -0.36 -17.71 16 15 H 0.07 1.97 8.05 -52.49 -0.42 1.55 16 16 C 0.06 1.78 5.52 -17.37 -0.10 1.68 16 17 N -0.84 -24.63 13.64 55.55 0.76 -23.87 16 18 Si 1.13 30.72 25.99 -169.99 -4.42 26.31 16 19 H -0.32 -8.40 7.11 56.52 0.40 -8.00 16 20 H -0.28 -7.87 6.78 56.52 0.38 -7.48 16 21 H -0.29 -7.97 7.11 56.52 0.40 -7.57 16 22 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.97 7.77 -51.93 -0.40 0.57 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.97 8.05 -51.93 -0.42 0.55 16 33 H 0.39 7.53 8.30 -40.82 -0.34 7.19 16 34 H 0.28 7.82 8.72 -40.82 -0.36 7.46 16 LS Contribution 282.37 15.07 4.26 4.26 Total: -1.00 -32.81 282.37 -5.70 -38.51 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -5.38 Total: -2.17 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -0.27 Total: -2.34 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.43 Total: -40.67 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.31 Total: -23.90 kcal Atomic # 14 Polarization: 30.72 SS G_CDS: -4.42 Total: 26.31 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.81 -5.70 -38.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614014607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.828 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds