Wall clock time and date at job start Thu Apr 9 2020 11:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 O 1.42895 * 109.47503 * 180.02562 * 5 4 3 7 7 C 1.42902 * 114.00370 * 179.97438 * 6 5 4 8 8 H 1.09003 * 110.88426 * 29.29734 * 7 6 5 9 9 C 1.55158 * 111.00431 * 153.17536 * 7 6 5 10 10 C 1.54325 * 102.94272 * 153.57703 * 9 7 6 11 11 N 1.47028 * 107.27000 * 337.81017 * 10 9 7 12 12 C 1.36937 * 125.64857 * 178.99451 * 11 10 9 13 13 H 1.08001 * 119.99786 * 179.97438 * 12 11 10 14 14 C 1.38804 * 119.99970 * 359.97438 * 12 11 10 15 15 N 1.31617 * 120.00183 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99960 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46956 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47329 * 119.99795 * 16 14 12 19 19 H 1.48509 * 109.46624 * 239.99688 * 16 14 12 20 20 C 1.47465 * 108.71978 * 358.97473 * 11 10 9 21 21 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 22 22 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 24 24 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 25 25 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 26 26 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 27 27 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 28 28 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 29 29 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 30 30 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 31 31 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 32 32 H 1.08999 * 110.72605 * 271.94192 * 9 7 6 33 33 H 1.08999 * 110.71996 * 35.21527 * 9 7 6 34 34 H 1.08999 * 109.87931 * 97.22371 * 10 9 7 35 35 H 1.09001 * 109.88323 * 218.23908 * 10 9 7 36 36 H 0.97006 * 120.00359 * 180.02562 * 15 14 12 37 37 H 1.09003 * 110.34941 * 265.24860 * 20 11 10 38 38 H 1.09005 * 110.40532 * 142.92217 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 8 5.5089 2.8851 -0.0012 7 6 6.0901 4.1906 -0.0013 8 1 5.4372 4.9067 0.4978 9 6 7.4977 4.1727 0.6511 10 6 8.2044 5.3701 -0.0186 11 7 7.5057 5.6369 -1.2845 12 6 7.8122 6.6353 -2.1702 13 1 7.2362 6.7485 -3.0767 14 6 8.8633 7.5016 -1.9029 15 7 9.5649 7.3639 -0.7979 16 14 9.2810 8.8640 -3.1108 17 1 8.3488 8.8050 -4.2652 18 1 9.1516 10.1806 -2.4362 19 1 10.6752 8.6889 -3.5915 20 6 6.4203 4.6513 -1.4429 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9564 -0.8899 28 1 3.9337 0.9285 0.8891 29 1 3.9329 0.9289 -0.8909 30 1 3.7162 3.3994 -0.8895 31 1 3.7170 3.3984 0.8904 32 1 7.4254 4.3211 1.7286 33 1 8.0167 3.2418 0.4230 34 1 8.1453 6.2449 0.6290 35 1 9.2479 5.1230 -0.2135 36 1 10.2992 7.9696 -0.6108 37 1 6.7597 3.8068 -2.0427 38 1 5.5480 5.1170 -1.9015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224661663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:33 Heat of formation + Delta-G solvation = -46.657721 kcal Electronic energy + Delta-G solvation = -15710.589894 eV Core-core repulsion = 13166.997456 eV Total energy + Delta-G solvation = -2543.592437 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.38936 -36.50379 -35.32973 -32.30017 -31.14888 -29.11421 -27.14497 -25.84062 -24.20937 -21.92799 -21.19193 -20.18622 -19.97620 -16.92972 -16.43975 -16.05895 -14.84531 -14.66401 -14.38079 -14.11254 -13.67542 -13.26777 -13.07191 -12.66011 -12.23157 -12.07873 -11.75254 -11.53823 -11.31552 -11.17591 -10.94373 -10.86977 -10.79271 -10.69980 -10.53043 -10.13611 -10.04161 -9.73011 -9.69166 -9.00058 -8.58176 -6.81198 -5.69237 -3.03150 3.41297 3.46416 3.49253 3.90605 4.52536 4.74420 4.79621 4.91867 5.09180 5.26766 5.41816 5.45322 5.47818 5.52978 5.55816 5.61887 5.68283 5.75115 5.81680 5.84744 5.89091 5.93179 6.01398 6.21196 6.22595 6.34140 6.51844 6.58338 6.72958 6.77732 7.58082 7.64549 7.70301 7.85588 8.27639 9.23703 9.83826 10.49953 11.42579 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.058576 B = 0.004250 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.895187 B = 6586.911142 C = 6947.645120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.118 4.118 5 C 0.062 3.938 6 O -0.381 6.381 7 C 0.072 3.928 8 H 0.065 0.935 9 C -0.139 4.139 10 C 0.178 3.822 11 N -0.605 5.605 12 C -0.227 4.227 13 H 0.079 0.921 14 C -0.010 4.010 15 N -0.922 5.922 16 Si 0.913 3.087 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.290 1.290 20 C 0.119 3.881 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.252 0.748 37 H 0.027 0.973 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.853 -11.432 3.308 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.156 4.156 5 C -0.015 4.015 6 O -0.300 6.300 7 C 0.014 3.986 8 H 0.083 0.917 9 C -0.177 4.177 10 C 0.054 3.946 11 N -0.333 5.333 12 C -0.355 4.355 13 H 0.096 0.904 14 C -0.206 4.206 15 N -0.570 5.570 16 Si 0.744 3.256 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.217 1.217 20 C -0.008 4.008 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.593 -11.431 3.288 18.062 hybrid contribution 0.133 1.014 -0.600 1.186 sum -13.460 -10.416 2.688 17.231 Atomic orbital electron populations 1.21782 0.95987 1.01465 1.01811 1.21517 0.95681 0.96822 1.02154 1.21540 0.94820 0.96964 1.02248 1.21524 0.94762 0.96118 1.03161 1.22467 0.82193 0.97039 0.99823 1.87857 1.18545 1.28582 1.95030 1.23400 0.94607 0.82990 0.97600 0.91694 1.22988 0.94435 1.01120 0.99146 1.21161 0.94685 0.92329 0.86452 1.44387 1.33894 1.33153 1.21839 1.19121 1.12026 1.04673 0.99708 0.90353 1.24819 0.98287 0.99609 0.97869 1.69973 1.22660 1.39474 1.24928 0.86021 0.77930 0.81650 0.80028 1.20500 1.21749 1.21722 1.21920 0.91916 0.92781 0.94166 0.92747 0.92887 0.92791 0.91929 0.91989 0.91913 0.91810 0.91357 0.91205 0.93593 0.93863 0.91921 0.91517 0.93406 0.93580 0.93781 0.95497 0.94557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.73 16 2 C -0.12 -1.00 5.93 -26.73 -0.16 -1.16 16 3 C -0.12 -1.08 5.21 -26.73 -0.14 -1.22 16 4 C -0.12 -1.34 5.58 -26.73 -0.15 -1.48 16 5 C 0.06 0.85 5.80 37.16 0.22 1.07 16 6 O -0.38 -6.75 10.15 -35.23 -0.36 -7.10 16 7 C 0.07 1.41 3.51 -24.59 -0.09 1.32 16 8 H 0.07 1.22 7.86 -51.93 -0.41 0.81 16 9 C -0.14 -2.82 6.69 -24.90 -0.17 -2.99 16 10 C 0.18 4.52 5.37 -3.06 -0.02 4.51 16 11 N -0.60 -16.23 3.40 -170.04 -0.58 -16.81 16 12 C -0.23 -6.53 10.28 -15.06 -0.15 -6.69 16 13 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 14 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 15 N -0.92 -27.62 10.31 55.49 0.57 -27.05 16 16 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 C 0.12 2.66 6.97 -2.51 -0.02 2.65 16 21 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.56 8.11 -51.93 -0.42 0.14 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.05 1.31 7.38 -51.93 -0.38 0.93 16 35 H 0.05 1.28 7.50 -51.93 -0.39 0.89 16 36 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 306.48 15.07 4.62 4.62 Total: -1.00 -30.71 306.48 -8.24 -38.95 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -7.07 Total: -4.92 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -0.40 Total: -5.10 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.01 Total: -43.86 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.36 Total: -7.10 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.71 -8.24 -38.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224661663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.708 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds