Wall clock time and date at job start Thu Apr 9 2020 11:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47358 * 2 1 4 4 H 1.09004 * 109.47048 * 54.99902 * 3 2 1 5 5 C 1.53002 * 109.47112 * 295.00166 * 3 2 1 6 6 C 1.52992 * 109.47145 * 175.00160 * 3 2 1 7 7 O 1.42901 * 109.47138 * 185.00014 * 6 3 2 8 8 C 1.42906 * 114.00094 * 179.97438 * 7 6 3 9 9 H 1.08995 * 110.88766 * 327.57399 * 8 7 6 10 10 C 1.55158 * 111.00350 * 203.64877 * 8 7 6 11 11 C 1.54324 * 102.93998 * 206.42405 * 10 8 7 12 12 N 1.47016 * 107.27244 * 22.19690 * 11 10 8 13 13 C 1.36940 * 125.64984 * 181.09690 * 12 11 10 14 14 H 1.08003 * 120.00223 * 173.84594 * 13 12 11 15 15 C 1.38811 * 119.99789 * 353.84398 * 13 12 11 16 16 N 1.31621 * 120.00026 * 6.82921 * 15 13 12 17 17 Si 1.86804 * 119.99878 * 186.83169 * 15 13 12 18 18 H 1.48503 * 109.47284 * 94.98807 * 17 15 13 19 19 H 1.48501 * 109.46859 * 214.98746 * 17 15 13 20 20 H 1.48496 * 109.47130 * 334.98612 * 17 15 13 21 21 C 1.47426 * 108.70225 * 1.05585 * 12 11 10 22 22 H 1.09002 * 109.46997 * 59.99949 * 1 2 3 23 23 H 1.09002 * 109.47204 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46861 * 300.00173 * 1 2 3 25 25 H 1.08998 * 109.46861 * 239.99827 * 2 1 3 26 26 H 1.09002 * 109.46997 * 120.00051 * 2 1 3 27 27 H 1.09004 * 109.46949 * 299.99797 * 5 3 2 28 28 H 1.08996 * 109.47167 * 59.99803 * 5 3 2 29 29 H 1.09003 * 109.46850 * 180.02562 * 5 3 2 30 30 H 1.08998 * 109.47475 * 65.00032 * 6 3 2 31 31 H 1.09008 * 109.47166 * 304.99418 * 6 3 2 32 32 H 1.08994 * 110.72092 * 324.78854 * 10 8 7 33 33 H 1.09003 * 110.71902 * 88.06382 * 10 8 7 34 34 H 1.09007 * 109.88317 * 262.77209 * 11 10 8 35 35 H 1.09005 * 110.00905 * 141.68940 * 11 10 8 36 36 H 0.97002 * 119.99786 * 180.02562 * 16 15 13 37 37 H 1.09003 * 110.36633 * 217.03167 * 21 12 11 38 38 H 1.08994 * 110.36641 * 94.71692 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5648 1.4442 0.1257 7 8 4.0316 2.7897 0.2428 8 6 5.4506 2.9040 0.3669 9 1 5.8643 2.0481 0.9001 10 6 5.8427 4.2351 1.0611 11 6 7.2599 4.5061 0.5134 12 7 7.3894 3.7634 -0.7487 13 6 8.5065 3.7226 -1.5397 14 1 8.5367 3.0681 -2.3983 15 6 9.6001 4.5225 -1.2381 16 7 9.6184 5.2183 -0.1209 17 14 11.0459 4.6117 -2.4176 18 1 10.8826 5.7850 -3.3131 19 1 12.3068 4.7499 -1.6455 20 1 11.0976 3.3710 -3.2319 21 6 6.1179 3.0689 -1.0213 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0699 1.5874 -2.1492 28 1 0.5490 2.1252 -1.3969 29 1 1.9991 3.1540 -1.3075 30 1 4.0029 0.9835 -0.7597 31 1 3.8571 0.8799 1.0114 32 1 5.1595 5.0349 0.7755 33 1 5.8646 4.1135 2.1441 34 1 8.0062 4.1573 1.2272 35 1 7.3917 5.5727 0.3311 36 1 10.3824 5.7775 0.0897 37 1 6.3069 2.0935 -1.4696 38 1 5.4887 3.6724 -1.6754 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224663706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:38 Heat of formation + Delta-G solvation = -60.171288 kcal Electronic energy + Delta-G solvation = -16119.649795 eV Core-core repulsion = 13575.471365 eV Total energy + Delta-G solvation = -2544.178430 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.00664 -38.22023 -36.44898 -34.14496 -31.31574 -30.61897 -28.88092 -27.53418 -26.29350 -24.02180 -22.05381 -21.89751 -20.80942 -18.96345 -17.93604 -16.74099 -16.61370 -16.13469 -15.66519 -15.51264 -14.99317 -14.52308 -14.17518 -14.02165 -13.82057 -13.27484 -13.14873 -12.93827 -12.80876 -12.73431 -12.49603 -12.19158 -12.09140 -12.01945 -11.77496 -11.60513 -11.50167 -11.37736 -11.33304 -10.72573 -10.42904 -8.94287 -7.88962 -5.25141 1.45329 1.48089 1.56909 2.44646 2.66900 3.29665 3.71292 3.81492 3.94281 3.99444 4.07031 4.13691 4.17622 4.43200 4.49968 4.60533 4.66950 4.72478 4.75522 4.82418 4.89428 4.94517 5.01626 5.06765 5.11940 5.17712 5.24042 5.29049 5.41707 5.51011 5.56916 5.61033 5.69671 6.14180 6.36869 7.06047 7.72010 8.37466 9.22131 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.056994 B = 0.004942 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.164031 B = 5664.456947 C = 5930.332242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.086 4.086 4 H 0.074 0.926 5 C -0.143 4.143 6 C 0.057 3.943 7 O -0.384 6.384 8 C 0.091 3.909 9 H 0.074 0.926 10 C -0.124 4.124 11 C 0.185 3.815 12 N -0.627 5.627 13 C -0.250 4.250 14 H 0.083 0.917 15 C -0.063 4.063 16 N -0.949 5.949 17 Si 0.982 3.018 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.266 1.266 21 C 0.116 3.884 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.016 0.984 35 H 0.014 0.986 36 H 0.249 0.751 37 H 0.042 0.958 38 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.073 -9.465 1.345 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.104 4.104 4 H 0.093 0.907 5 C -0.201 4.201 6 C -0.019 4.019 7 O -0.303 6.303 8 C 0.032 3.968 9 H 0.092 0.908 10 C -0.162 4.162 11 C 0.060 3.940 12 N -0.354 5.354 13 C -0.379 4.379 14 H 0.100 0.900 15 C -0.256 4.256 16 N -0.598 5.598 17 Si 0.809 3.191 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.191 1.191 21 C -0.010 4.010 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -16.020 -9.236 1.335 18.540 hybrid contribution 1.320 0.230 -0.530 1.441 sum -14.699 -9.007 0.806 17.258 Atomic orbital electron populations 1.21790 0.94572 1.02216 1.02186 1.21495 0.96953 0.94297 1.02535 1.21148 0.92243 0.97713 0.99325 0.90721 1.21802 1.01630 1.00144 0.96478 1.22810 0.95731 0.83130 1.00240 1.87855 1.20413 1.27876 1.94106 1.23056 0.80550 0.98055 0.95151 0.90763 1.22793 0.96474 0.96600 1.00371 1.20935 0.91855 0.94649 0.86542 1.44671 1.09894 1.56804 1.24069 1.19482 0.92245 1.19779 1.06384 0.89958 1.25723 1.01467 0.99082 0.99358 1.70188 1.31373 1.33519 1.24679 0.85020 0.78038 0.78103 0.77917 1.21378 1.21807 1.19089 1.22056 0.87212 0.95369 0.96370 0.92280 0.91789 0.92575 0.91618 0.91367 0.92981 0.91136 0.93872 0.93614 0.92611 0.91045 0.89311 0.96597 0.96757 0.94171 0.93949 0.96088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.67 71.98 0.70 -1.31 16 2 C -0.12 -1.84 5.40 30.59 0.17 -1.68 16 3 C -0.09 -1.78 2.63 -10.80 -0.03 -1.81 16 4 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 5 C -0.14 -3.06 8.85 71.98 0.64 -2.42 16 6 C 0.06 1.46 5.20 71.98 0.37 1.84 16 7 O -0.38 -12.63 9.69 -148.98 -1.44 -14.08 16 8 C 0.09 3.37 3.49 31.98 0.11 3.49 16 9 H 0.07 2.63 7.90 -2.39 -0.02 2.61 16 10 C -0.12 -4.92 6.69 31.78 0.21 -4.70 16 11 C 0.19 9.57 5.38 86.73 0.47 10.03 16 12 N -0.63 -33.93 3.39 -691.99 -2.35 -36.28 16 13 C -0.25 -14.53 10.26 84.03 0.86 -13.66 16 14 H 0.08 4.56 7.84 -2.91 -0.02 4.53 16 15 C -0.06 -3.67 5.48 84.86 0.47 -3.20 16 16 N -0.95 -58.13 10.36 21.65 0.22 -57.90 16 17 Si 0.98 46.36 29.56 68.60 2.03 48.39 16 18 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 19 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 21 C 0.12 5.11 6.97 86.85 0.61 5.71 16 22 H 0.06 0.78 6.57 -2.39 -0.02 0.76 16 23 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.23 6.56 -2.39 -0.02 1.21 16 29 H 0.04 1.10 7.82 -2.39 -0.02 1.08 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.30 8.11 -2.38 -0.02 1.28 16 32 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.02 0.89 7.55 -2.38 -0.02 0.87 16 35 H 0.01 0.82 7.36 -2.38 -0.02 0.80 16 36 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 37 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -65.60 301.91 4.02 -61.58 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 0.99 Total: 6.01 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 4.57 Total: -7.72 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -2.12 Total: -94.19 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -1.44 Total: -14.08 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -65.60 4.02 -61.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224663706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.408 kcal (2) G-P(sol) polarization free energy of solvation -65.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds