Wall clock time and date at job start Thu Apr 9 2020 11:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47363 * 2 1 4 4 H 1.08999 * 109.46950 * 302.61928 * 3 2 1 5 5 C 1.50700 * 109.47275 * 182.62067 * 3 2 1 6 6 H 1.08005 * 119.99756 * 245.40996 * 5 3 2 7 7 C 1.37870 * 120.00114 * 65.41630 * 5 3 2 8 8 N 1.31523 * 120.00165 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00058 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47293 * 89.99894 * 9 7 5 11 11 H 1.48503 * 109.47390 * 209.99919 * 9 7 5 12 12 H 1.48494 * 109.47384 * 329.99720 * 9 7 5 13 13 N 1.46898 * 109.47047 * 62.61961 * 3 2 1 14 14 C 1.47612 * 111.11335 * 184.06261 * 13 3 2 15 15 C 1.54319 * 107.25715 * 236.87776 * 14 13 3 16 16 H 1.09004 * 110.70401 * 96.00062 * 15 14 13 17 17 C 1.53000 * 110.70539 * 219.24023 * 15 14 13 18 18 C 1.55141 * 103.01760 * 337.62336 * 15 14 13 19 19 C 1.47836 * 111.00385 * 63.25461 * 13 3 2 20 20 H 1.09006 * 110.37347 * 27.41980 * 19 13 3 21 21 C 1.53004 * 110.37545 * 265.19729 * 19 13 3 22 22 O 1.42899 * 109.46892 * 301.03131 * 21 19 13 23 23 H 1.09005 * 109.47035 * 65.15586 * 1 2 3 24 24 H 1.09004 * 109.47384 * 185.15354 * 1 2 3 25 25 H 1.08998 * 109.47363 * 305.15717 * 1 2 3 26 26 H 1.08997 * 109.47274 * 239.99741 * 2 1 3 27 27 H 1.09001 * 109.47149 * 119.99837 * 2 1 3 28 28 H 0.96997 * 119.99744 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.95342 * 117.42453 * 14 13 3 30 30 H 1.09001 * 109.93411 * 356.32588 * 14 13 3 31 31 H 1.09007 * 109.46765 * 173.59929 * 17 15 14 32 32 H 1.09002 * 109.47258 * 293.59881 * 17 15 14 33 33 H 1.09000 * 109.47034 * 53.60287 * 17 15 14 34 34 H 1.09000 * 110.98893 * 277.56080 * 18 15 14 35 35 H 1.09000 * 111.02331 * 153.75492 * 18 15 14 36 36 H 1.09005 * 109.47174 * 181.03203 * 21 19 13 37 37 H 1.08990 * 109.47147 * 61.03067 * 21 19 13 38 38 H 0.96694 * 114.00302 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6388 1.9697 -0.8656 5 6 3.5456 1.4430 -0.0650 6 1 4.1219 1.8193 0.7673 7 6 4.1874 0.9631 -1.1869 8 7 3.4856 0.5044 -2.2003 9 14 6.0536 0.9643 -1.2677 10 1 6.5734 -0.3171 -0.7264 11 1 6.4879 1.1177 -2.6795 12 1 6.5832 2.0933 -0.4615 13 7 1.6027 2.1165 1.2298 14 6 1.9930 3.5400 1.2236 15 6 2.8457 3.7865 2.4859 16 1 3.9083 3.7183 2.2526 17 6 2.5127 5.1446 3.1070 18 6 2.4159 2.6319 3.4289 19 6 2.1918 1.4744 2.4241 20 1 3.1411 1.0019 2.1716 21 6 1.2233 0.4432 3.0068 22 8 -0.0035 1.0867 3.3573 23 1 -0.3633 0.4318 -0.9326 24 1 -0.3634 -1.0235 0.0923 25 1 -0.3634 0.5917 0.8402 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9372 0.1671 -2.9897 29 1 1.1036 4.1697 1.2481 30 1 2.5789 3.7608 0.3313 31 1 3.0399 5.2495 4.0553 32 1 2.8225 5.9399 2.4291 33 1 1.4385 5.2117 3.2792 34 1 1.4924 2.8787 3.9525 35 1 3.2096 2.3878 4.1350 36 1 1.6642 -0.0075 3.8961 37 1 1.0283 -0.3316 2.2655 38 1 -0.6660 0.4919 3.7344 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166322.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:44 Heat of formation + Delta-G solvation = -75.177141 kcal Electronic energy + Delta-G solvation = -17429.588929 eV Core-core repulsion = 14884.759796 eV Total energy + Delta-G solvation = -2544.829132 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.53247 -37.04805 -36.26556 -33.88233 -32.19974 -31.22689 -28.39713 -27.00616 -25.67073 -24.23762 -21.97097 -21.06013 -20.39006 -18.33885 -18.16096 -16.95408 -16.48161 -16.06719 -15.28230 -14.80135 -14.64030 -14.40945 -14.03888 -13.86701 -13.61212 -13.33746 -13.18723 -12.88325 -12.80542 -12.43740 -12.31912 -12.19935 -11.87505 -11.63115 -11.57879 -11.48366 -11.25860 -11.16241 -10.90530 -10.56429 -10.24865 -8.83128 -8.02154 -6.23962 1.35447 1.37623 1.45889 2.39598 3.16526 3.48176 3.68139 3.87252 4.03548 4.17399 4.51734 4.55170 4.61674 4.68784 4.75581 4.77102 4.81369 4.88038 4.92174 5.03403 5.11756 5.16924 5.21251 5.25501 5.31832 5.41765 5.46574 5.53316 5.64959 5.68134 5.84274 6.04271 6.24364 6.45727 6.68341 7.00900 7.19988 7.46653 8.93591 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022521 B = 0.011727 C = 0.009011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.975621 B = 2387.082781 C = 3106.589582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.100 4.100 3 C 0.214 3.786 4 H -0.005 1.005 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.943 3.057 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.511 5.511 14 C 0.057 3.943 15 C -0.109 4.109 16 H 0.054 0.946 17 C -0.127 4.127 18 C -0.105 4.105 19 C 0.066 3.934 20 H 0.054 0.946 21 C 0.092 3.908 22 O -0.568 6.568 23 H 0.025 0.975 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.260 0.740 29 H 0.062 0.938 30 H 0.027 0.973 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 1.847 11.329 11.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.138 4.138 3 C 0.106 3.894 4 H 0.013 0.987 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.234 5.234 14 C -0.072 4.072 15 C -0.128 4.128 16 H 0.073 0.927 17 C -0.185 4.185 18 C -0.143 4.143 19 C -0.043 4.043 20 H 0.072 0.928 21 C 0.013 3.987 22 O -0.374 6.374 23 H 0.044 0.956 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.443 2.252 10.917 11.666 hybrid contribution 1.796 -0.613 -0.747 2.040 sum -1.647 1.640 10.170 10.432 Atomic orbital electron populations 1.21665 0.96339 1.00014 1.00874 1.21454 0.94482 0.98050 0.99807 1.19199 0.91498 0.91468 0.87207 0.98659 1.21993 0.93765 1.41011 1.01546 0.92915 1.25631 1.01769 0.95096 0.95487 1.70052 1.36452 1.42535 1.06319 0.85783 0.81693 0.78456 0.77083 1.20069 1.21180 1.19729 1.63782 1.56050 1.01276 1.02330 1.22667 0.96985 0.90715 0.96819 1.22300 0.98465 0.96776 0.95286 0.92707 1.21643 1.01745 0.94612 1.00501 1.22653 1.01367 0.93699 0.96557 1.22622 0.95298 0.95758 0.90643 0.92838 1.22255 0.85117 0.93944 0.97343 1.86538 1.26008 1.39735 1.85071 0.95589 0.93468 0.91288 0.93584 0.93791 0.93075 0.91967 0.95485 0.91415 0.92669 0.92235 0.89953 0.90871 0.92790 0.93475 0.76961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 9.02 71.98 0.65 -4.69 16 2 C -0.10 -4.73 4.72 30.59 0.14 -4.58 16 3 C 0.21 10.88 1.51 44.17 0.07 10.95 16 4 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 5 C -0.54 -29.39 6.40 25.60 0.16 -29.22 16 6 H 0.05 2.84 6.56 -2.91 -0.02 2.82 16 7 C 0.02 1.09 5.31 84.65 0.45 1.54 16 8 N -0.91 -53.04 11.72 21.45 0.25 -52.79 16 9 Si 0.94 43.72 29.54 68.60 2.03 45.75 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 13 N -0.51 -22.13 3.99 -839.54 -3.35 -25.48 16 14 C 0.06 2.32 5.96 86.61 0.52 2.83 16 15 C -0.11 -3.70 3.54 -9.61 -0.03 -3.73 16 16 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 17 C -0.13 -3.36 9.16 71.98 0.66 -2.70 16 18 C -0.10 -3.38 5.89 31.98 0.19 -3.19 16 19 C 0.07 2.49 1.87 45.39 0.08 2.58 16 20 H 0.05 2.34 5.94 -2.38 -0.01 2.32 16 21 C 0.09 2.91 5.95 71.98 0.43 3.34 16 22 O -0.57 -16.75 12.14 -148.98 -1.81 -18.56 16 23 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 2.72 6.26 -2.39 -0.01 2.71 16 26 H 0.05 2.48 6.46 -2.39 -0.02 2.47 16 27 H 0.04 1.99 5.31 -2.39 -0.01 1.97 16 28 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.06 2.41 7.77 -2.39 -0.02 2.39 16 30 H 0.03 1.25 7.04 -2.39 -0.02 1.24 16 31 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.52 8.06 -2.39 -0.02 1.50 16 34 H 0.08 2.59 7.18 -2.39 -0.02 2.57 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.05 1.61 4.43 -2.39 -0.01 1.60 16 38 H 0.38 7.43 9.12 -74.06 -0.68 6.75 16 Total: -1.00 -61.80 285.60 0.79 -61.01 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.36 Total: 16.95 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 3.32 Total: -26.87 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -3.10 Total: -78.27 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -1.81 Total: -18.56 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -61.80 0.79 -61.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166322.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.169 kcal (2) G-P(sol) polarization free energy of solvation -61.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds