Wall clock time and date at job start Thu Apr 9 2020 11:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47058 * 2 1 4 4 O 1.42898 * 109.47421 * 240.00560 * 2 1 3 5 5 C 1.52997 * 109.47480 * 120.00153 * 2 1 3 6 6 C 1.53000 * 109.47348 * 185.00324 * 5 2 1 7 7 N 1.46499 * 109.46732 * 180.02562 * 6 5 2 8 8 C 1.36944 * 120.00062 * 269.99572 * 7 6 5 9 9 H 1.07998 * 120.00228 * 141.60219 * 8 7 6 10 10 C 1.38815 * 119.99862 * 321.60542 * 8 7 6 11 11 N 1.31621 * 119.99866 * 339.26403 * 10 8 7 12 12 Si 1.86799 * 120.00063 * 159.26224 * 10 8 7 13 13 H 1.48499 * 109.47172 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47244 * 119.99896 * 12 10 8 15 15 H 1.48500 * 109.46845 * 240.00156 * 12 10 8 16 16 C 1.46496 * 120.00232 * 89.99997 * 7 6 5 17 17 C 1.54263 * 110.03640 * 242.54310 * 16 7 6 18 18 C 1.54958 * 104.16366 * 217.13944 * 17 16 7 19 19 C 1.54883 * 102.78046 * 37.88605 * 18 17 16 20 20 C 1.53882 * 110.03103 * 125.32496 * 16 7 6 21 21 H 1.08998 * 109.47651 * 299.99739 * 1 2 3 22 22 H 1.09004 * 109.47550 * 60.00253 * 1 2 3 23 23 H 1.09004 * 109.46875 * 179.97438 * 1 2 3 24 24 H 0.96699 * 114.00109 * 299.99413 * 4 2 1 25 25 H 1.09003 * 109.47098 * 65.00155 * 5 2 1 26 26 H 1.09000 * 109.47083 * 305.00695 * 5 2 1 27 27 H 1.09000 * 109.47108 * 299.99717 * 6 5 2 28 28 H 1.08993 * 109.47135 * 60.00005 * 6 5 2 29 29 H 0.97007 * 119.99783 * 175.03041 * 11 10 8 30 30 H 1.08992 * 110.01677 * 3.94048 * 16 7 6 31 31 H 1.09005 * 110.48433 * 335.78630 * 17 16 7 32 32 H 1.08996 * 110.48414 * 98.42343 * 17 16 7 33 33 H 1.09003 * 110.72036 * 279.57218 * 18 17 16 34 34 H 1.08999 * 110.92596 * 156.29842 * 18 17 16 35 35 H 1.09003 * 110.49302 * 203.40648 * 19 18 17 36 36 H 1.09001 * 110.60000 * 80.81548 * 19 18 17 37 37 H 1.08995 * 110.03600 * 238.56788 * 20 16 7 38 38 H 1.08994 * 110.03537 * 359.95721 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 3.5649 -0.6132 1.3136 7 7 4.0532 -1.3044 2.5095 8 6 4.1840 -0.6218 3.6894 9 1 3.9317 -1.1032 4.6227 10 6 4.6409 0.6890 3.6860 11 7 5.3222 1.1458 2.6566 12 14 4.2887 1.8047 5.1422 13 1 3.5104 1.0567 6.1620 14 1 5.5703 2.2636 5.7355 15 1 3.5049 2.9808 4.6865 16 6 4.4017 -2.7257 2.4430 17 6 3.4850 -3.5390 3.3800 18 6 4.4146 -4.6321 3.9650 19 6 5.7507 -3.8746 4.1647 20 6 5.8418 -2.9392 2.9413 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7211 -1.5951 -1.2330 25 1 1.7517 -1.7716 1.2055 26 1 1.6054 -0.2619 2.1369 27 1 3.9995 -1.0727 0.4259 28 1 3.8531 0.4370 1.3573 29 1 5.5792 2.0805 2.6213 30 1 4.3036 -3.0865 1.4192 31 1 3.0940 -2.9050 4.1759 32 1 2.6693 -3.9922 2.8166 33 1 4.5376 -5.4526 3.2580 34 1 4.0325 -4.9992 4.9175 35 1 6.5876 -4.5730 4.1741 36 1 5.7286 -3.2947 5.0874 37 1 6.4423 -3.4043 2.1597 38 1 6.2817 -1.9852 3.2318 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133783996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:36 Heat of formation + Delta-G solvation = -74.244600 kcal Electronic energy + Delta-G solvation = -16850.250601 eV Core-core repulsion = 14305.461907 eV Total energy + Delta-G solvation = -2544.788694 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.51539 -38.53321 -36.04186 -33.43177 -32.33984 -29.80349 -29.30573 -28.09294 -25.77767 -23.15978 -22.09565 -21.30961 -20.72365 -18.12781 -17.21418 -17.02965 -16.61832 -16.43012 -15.92399 -15.27432 -14.74716 -14.49131 -14.05623 -13.81417 -13.80797 -13.10471 -12.98221 -12.84844 -12.73061 -12.36180 -12.15224 -12.04395 -11.84611 -11.75769 -11.71354 -11.52039 -11.33379 -11.22862 -11.16831 -10.75127 -10.41796 -8.47667 -7.70062 -5.39411 1.42705 1.46983 1.55673 2.53707 3.27968 3.52753 3.70119 3.99817 4.03918 4.10442 4.27834 4.31585 4.45361 4.62596 4.70780 4.78061 4.87865 4.93101 4.95885 4.97703 4.99902 5.07100 5.23140 5.25206 5.29278 5.30882 5.35210 5.52283 5.61065 5.64076 5.70553 5.78880 5.93786 6.55059 6.94732 7.26008 7.97523 8.49639 9.19776 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.011996 C = 0.007977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.956080 B = 2333.533511 C = 3509.318219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 H 0.073 0.927 4 O -0.578 6.578 5 C -0.145 4.145 6 C 0.154 3.846 7 N -0.594 5.594 8 C -0.236 4.236 9 H 0.053 0.947 10 C -0.040 4.040 11 N -0.918 5.918 12 Si 0.943 3.057 13 H -0.268 1.268 14 H -0.296 1.296 15 H -0.291 1.291 16 C 0.161 3.839 17 C -0.127 4.127 18 C -0.111 4.111 19 C -0.113 4.113 20 C -0.131 4.131 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.384 0.616 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.019 0.981 28 H 0.053 0.947 29 H 0.246 0.754 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.052 0.948 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.024 -8.429 -1.987 11.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.046 3.954 3 H 0.091 0.909 4 O -0.385 6.385 5 C -0.185 4.185 6 C 0.028 3.972 7 N -0.313 5.313 8 C -0.366 4.366 9 H 0.070 0.930 10 C -0.236 4.236 11 N -0.563 5.563 12 Si 0.772 3.228 13 H -0.192 1.192 14 H -0.223 1.223 15 H -0.217 1.217 16 C 0.054 3.946 17 C -0.167 4.167 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.170 4.170 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.233 0.767 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.617 -7.717 -2.100 10.380 hybrid contribution -0.053 0.690 0.832 1.082 sum -6.671 -7.027 -1.268 9.771 Atomic orbital electron populations 1.22382 0.94623 1.03195 1.02637 1.21817 0.93794 0.95673 0.84081 0.90876 1.86531 1.78035 1.29881 1.44084 1.22621 0.98735 0.99905 0.97261 1.20707 0.91050 0.98681 0.86744 1.44191 1.73930 1.05619 1.07605 1.19033 1.35013 0.95693 0.86899 0.92951 1.25765 0.97302 1.01401 0.99171 1.70224 1.38536 1.14069 1.33489 0.85590 0.77105 0.79432 0.80660 1.19222 1.22343 1.21737 1.21278 0.92275 0.84609 0.96436 1.22724 0.98016 0.96761 0.99152 1.22404 0.94557 0.97048 1.00869 1.22218 0.98301 0.97448 0.97159 1.22478 0.98376 0.98592 0.97550 0.91660 0.91491 0.91096 0.76712 0.92180 0.93196 0.96244 0.92888 0.94457 0.92988 0.93376 0.91794 0.90299 0.91100 0.90900 0.93650 0.92974 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 9.53 71.98 0.69 -3.52 16 2 C 0.11 3.44 3.59 30.59 0.11 3.55 16 3 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 4 O -0.58 -18.37 12.87 -148.98 -1.92 -20.29 16 5 C -0.15 -5.49 5.22 30.59 0.16 -5.33 16 6 C 0.15 7.30 5.18 86.38 0.45 7.75 16 7 N -0.59 -28.99 2.38 -674.03 -1.60 -30.60 16 8 C -0.24 -12.64 7.75 84.03 0.65 -11.99 16 9 H 0.05 2.85 6.94 -2.91 -0.02 2.83 16 10 C -0.04 -2.21 4.96 84.86 0.42 -1.79 16 11 N -0.92 -54.47 11.48 21.65 0.25 -54.22 16 12 Si 0.94 44.94 29.61 68.60 2.03 46.97 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 14 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 15 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 16 C 0.16 6.63 3.42 45.72 0.16 6.78 16 17 C -0.13 -4.45 6.43 31.69 0.20 -4.25 16 18 C -0.11 -3.20 6.91 31.91 0.22 -2.98 16 19 C -0.11 -3.78 6.83 31.67 0.22 -3.56 16 20 C -0.13 -5.33 6.25 31.32 0.20 -5.13 16 21 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 23 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.38 8.94 9.05 -74.06 -0.67 8.27 16 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.02 0.92 7.58 -2.39 -0.02 0.90 16 28 H 0.05 2.94 5.55 -2.39 -0.01 2.93 16 29 H 0.25 14.22 8.32 -92.70 -0.77 13.45 16 30 H 0.05 2.05 7.81 -2.39 -0.02 2.03 16 31 H 0.05 1.92 6.64 -2.38 -0.02 1.90 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.04 1.87 7.17 -2.39 -0.02 1.85 16 Total: -1.00 -62.65 300.49 2.57 -60.08 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.34 Total: 18.53 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 3.47 Total: -20.48 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -1.36 Total: -84.82 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -1.92 Total: -20.29 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -62.65 2.57 -60.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133783996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.164 kcal (2) G-P(sol) polarization free energy of solvation -62.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds