Wall clock time and date at job start Thu Apr 9 2020 11:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47143 * 2 1 4 4 O 1.42906 * 109.47037 * 120.00151 * 2 1 3 5 5 C 1.53001 * 109.47120 * 239.99861 * 2 1 3 6 6 H 1.08999 * 110.62637 * 56.89748 * 5 2 1 7 7 C 1.55144 * 110.85679 * 293.68801 * 5 2 1 8 8 C 1.54899 * 101.65196 * 205.89520 * 7 5 2 9 9 N 1.47838 * 104.80026 * 37.06934 * 8 7 5 10 10 C 1.46904 * 111.00120 * 213.63623 * 9 8 7 11 11 C 1.52994 * 109.47264 * 290.84161 * 10 9 8 12 12 C 1.53001 * 109.47367 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46995 * 180.02562 * 12 11 10 14 14 H 1.07991 * 120.00449 * 359.72153 * 13 12 11 15 15 C 1.37885 * 119.99686 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 12 18 18 H 1.48493 * 109.47326 * 90.00142 * 17 15 13 19 19 H 1.48506 * 109.46545 * 209.99892 * 17 15 13 20 20 H 1.48498 * 109.47210 * 329.99603 * 17 15 13 21 21 C 1.47440 * 108.56454 * 335.90411 * 9 8 7 22 22 H 1.09001 * 109.47143 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47012 * 300.00054 * 1 2 3 24 24 H 1.09006 * 109.47122 * 60.00073 * 1 2 3 25 25 H 0.96703 * 113.99781 * 59.99694 * 4 2 1 26 26 H 1.09003 * 110.98714 * 323.98443 * 7 5 2 27 27 H 1.09003 * 110.99168 * 87.76160 * 7 5 2 28 28 H 1.09004 * 110.37361 * 278.23832 * 8 7 5 29 29 H 1.09001 * 110.37155 * 155.90272 * 8 7 5 30 30 H 1.08998 * 109.47046 * 170.83838 * 10 9 8 31 31 H 1.09001 * 109.47014 * 50.84038 * 10 9 8 32 32 H 1.08998 * 109.47353 * 59.99865 * 11 10 9 33 33 H 1.09006 * 109.47395 * 300.00120 * 11 10 9 34 34 H 1.08998 * 109.47065 * 59.99602 * 12 11 10 35 35 H 1.09001 * 109.46892 * 299.99866 * 12 11 10 36 36 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.89164 * 120.39807 * 21 9 8 38 38 H 1.09004 * 109.88998 * 241.58340 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 1 1.6427 -0.2551 -2.1509 7 6 1.6750 -2.2285 -1.2045 8 6 2.7825 -2.8452 -2.0947 9 7 3.9959 -2.0587 -1.7869 10 6 4.8498 -1.9217 -2.9745 11 6 5.4586 -3.2810 -3.3245 12 6 6.3484 -3.1382 -4.5609 13 6 6.9475 -4.4772 -4.9059 14 1 6.7203 -5.3425 -4.3010 15 6 7.7899 -4.5966 -5.9910 16 7 8.0661 -3.5429 -6.7280 17 14 8.5386 -6.2548 -6.4141 18 1 7.6395 -6.9804 -7.3470 19 1 9.8606 -6.0508 -7.0591 20 1 8.7111 -7.0513 -5.1728 21 6 3.5828 -0.7380 -1.2780 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.7209 -1.5953 1.2329 26 1 1.7324 -2.6141 -0.1866 27 1 0.6874 -2.4039 -1.6312 28 1 2.5223 -2.7447 -3.1484 29 1 2.9349 -3.8937 -1.8389 30 1 5.6478 -1.2085 -2.7679 31 1 4.2516 -1.5648 -3.8129 32 1 4.6606 -3.9942 -3.5310 33 1 6.0568 -3.6380 -2.4861 34 1 7.1463 -2.4251 -4.3539 35 1 5.7505 -2.7811 -5.3995 36 1 8.6585 -3.6270 -7.4915 37 1 3.9741 -0.5894 -0.2716 38 1 3.9498 0.0461 -1.9404 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159373087.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:46 Heat of formation + Delta-G solvation = -70.913002 kcal Electronic energy + Delta-G solvation = -15917.677856 eV Core-core repulsion = 13373.033631 eV Total energy + Delta-G solvation = -2544.644225 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.67105 -37.01874 -34.12764 -32.52632 -31.17638 -29.64727 -28.59073 -26.02215 -23.25325 -22.99118 -20.82301 -20.22224 -19.77444 -16.92987 -16.42475 -15.91969 -15.19309 -15.14962 -14.48817 -14.39617 -13.84756 -13.23863 -12.97324 -12.72725 -12.46523 -12.25132 -11.94562 -11.83077 -11.41286 -11.27899 -11.05626 -10.82671 -10.76121 -10.65715 -10.49471 -10.39898 -10.10623 -9.60561 -9.27521 -9.01227 -8.31025 -7.98724 -5.96386 -3.98194 3.34381 3.40331 3.44521 4.15295 4.23633 4.38040 4.49673 4.57920 4.77563 4.97972 5.06628 5.16381 5.39103 5.39360 5.43105 5.52384 5.61904 5.71923 5.77856 5.79478 5.90796 5.98102 6.07364 6.13897 6.27787 6.37788 6.74594 6.83963 7.16123 7.33189 7.45295 7.48768 7.72690 7.88006 8.04492 8.48238 9.09096 9.65545 11.15158 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.072120 B = 0.004187 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.150770 B = 6685.104861 C = 6789.760210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.113 3.887 3 H 0.098 0.902 4 O -0.559 6.559 5 C -0.144 4.144 6 H 0.081 0.919 7 C -0.126 4.126 8 C 0.045 3.955 9 N -0.529 5.529 10 C 0.051 3.949 11 C -0.103 4.103 12 C 0.021 3.979 13 C -0.517 4.517 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.047 3.953 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.373 0.627 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.028 0.972 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.015 0.985 35 H 0.013 0.987 36 H 0.260 0.740 37 H 0.084 0.916 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.254 6.234 11.797 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.053 3.947 3 H 0.116 0.884 4 O -0.366 6.366 5 C -0.164 4.164 6 H 0.099 0.901 7 C -0.164 4.164 8 C -0.083 4.083 9 N -0.253 5.253 10 C -0.076 4.076 11 C -0.141 4.141 12 C -0.017 4.017 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.081 4.081 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.222 0.778 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.564 6.612 12.125 20.072 hybrid contribution -0.286 -0.932 -1.284 1.613 sum -14.850 5.680 10.841 19.244 Atomic orbital electron populations 1.22504 0.96582 1.02606 1.02523 1.21752 0.92487 0.96272 0.84150 0.88418 1.86590 1.77351 1.29166 1.43483 1.23141 0.97463 0.96754 0.99042 0.90103 1.22752 0.98681 0.94360 1.00620 1.23008 0.88597 0.98907 0.97757 1.63648 1.16293 1.13385 1.31937 1.22505 0.95659 1.00238 0.89215 1.21604 0.98900 0.93576 1.00016 1.19082 0.94062 0.97081 0.91434 1.21262 1.27523 0.95071 1.11705 0.92679 1.25036 0.96600 0.96543 0.96387 1.69972 1.36858 1.28917 1.17942 0.86594 0.78560 0.84315 0.78542 1.20729 1.21247 1.19833 1.22853 0.92632 0.91162 1.01423 0.92177 0.91953 0.91686 0.77812 0.90921 0.91043 0.93497 0.90221 0.91373 0.95389 0.93645 0.92641 0.96639 0.96905 0.93074 0.89801 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.38 37.16 0.35 -0.98 16 2 C 0.11 1.02 3.39 -26.73 -0.09 0.93 16 3 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 4 O -0.56 -5.82 12.48 -35.23 -0.44 -6.26 16 5 C -0.14 -1.48 2.82 -88.80 -0.25 -1.74 16 6 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 7 C -0.13 -1.27 5.61 -24.59 -0.14 -1.41 16 8 C 0.05 0.62 5.78 -2.31 -0.01 0.60 16 9 N -0.53 -8.31 5.16 -231.26 -1.19 -9.50 16 10 C 0.05 0.94 4.56 -3.82 -0.02 0.92 16 11 C -0.10 -2.23 5.20 -26.73 -0.14 -2.37 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 14 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 17 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.05 0.62 6.37 -2.84 -0.02 0.61 16 22 H 0.06 0.40 7.49 -51.93 -0.39 0.01 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.37 2.98 6.89 45.56 0.31 3.29 16 26 H 0.07 0.66 6.01 -51.93 -0.31 0.35 16 27 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 28 H 0.05 0.68 7.62 -51.93 -0.40 0.28 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 31 H 0.03 0.51 7.85 -51.93 -0.41 0.10 16 32 H 0.04 0.97 7.49 -51.93 -0.39 0.58 16 33 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.08 1.16 7.25 -51.93 -0.38 0.78 16 38 H 0.05 0.67 7.55 -51.93 -0.39 0.28 16 LS Contribution 299.94 15.07 4.52 4.52 Total: -1.00 -31.38 299.94 -8.38 -39.76 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.11 Total: -1.93 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -0.87 Total: -16.87 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.46 Total: -36.25 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.44 Total: -6.26 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.38 -8.38 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159373087.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.153 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds