Wall clock time and date at job start Thu Apr 9 2020 11:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46546 * 2 1 4 4 O 1.42903 * 109.47273 * 119.99584 * 2 1 3 5 5 C 1.53003 * 109.47445 * 240.00180 * 2 1 3 6 6 C 1.52995 * 109.47101 * 175.95782 * 5 2 1 7 7 H 1.08998 * 110.37328 * 57.15434 * 6 5 2 8 8 C 1.54378 * 110.41063 * 294.80224 * 6 5 2 9 9 C 1.54263 * 105.06408 * 217.37397 * 8 6 5 10 10 C 1.54381 * 105.05796 * 359.97438 * 9 8 6 11 11 N 1.48558 * 110.41095 * 179.63425 * 6 5 2 12 12 C 1.46901 * 111.00030 * 277.81564 * 11 6 5 13 13 C 1.52996 * 109.47511 * 164.29160 * 12 11 6 14 14 C 1.50694 * 109.47254 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00274 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99724 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99839 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00315 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47202 * 90.00034 * 18 16 14 20 20 H 1.48500 * 109.47397 * 209.99873 * 18 16 14 21 21 H 1.48504 * 109.47259 * 329.99820 * 18 16 14 22 22 H 1.09003 * 109.46546 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47437 * 299.99976 * 1 2 3 24 24 H 1.08995 * 109.47385 * 60.00730 * 1 2 3 25 25 H 0.96700 * 113.99407 * 60.00666 * 4 2 1 26 26 H 1.08997 * 109.46666 * 295.95544 * 5 2 1 27 27 H 1.08998 * 109.47242 * 55.95344 * 5 2 1 28 28 H 1.09004 * 110.32559 * 336.26889 * 8 6 5 29 29 H 1.09006 * 110.32771 * 98.47382 * 8 6 5 30 30 H 1.09001 * 110.32697 * 118.89591 * 9 8 6 31 31 H 1.08999 * 110.31936 * 241.10473 * 9 8 6 32 32 H 1.09000 * 110.41059 * 142.63058 * 10 9 8 33 33 H 1.08997 * 110.41269 * 264.95984 * 10 9 8 34 34 H 1.08998 * 109.46810 * 284.29343 * 12 11 6 35 35 H 1.09001 * 109.47046 * 44.29524 * 12 11 6 36 36 H 1.09006 * 109.47465 * 300.00546 * 13 12 11 37 37 H 1.09000 * 109.46993 * 59.99696 * 13 12 11 38 38 H 0.97001 * 119.99724 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7212 -1.2493 6 6 3.5666 -0.6337 -1.3011 7 1 4.0018 -1.0552 -0.3950 8 6 4.0160 0.8320 -1.4827 9 6 5.2403 0.7629 -2.4187 10 6 5.4280 -0.7388 -2.7234 11 7 4.0854 -1.3359 -2.5031 12 6 4.1851 -2.7822 -2.2658 13 6 4.3378 -3.5092 -3.6033 14 6 4.4395 -4.9928 -3.3598 15 1 4.3989 -5.3788 -2.3520 16 6 4.5844 -5.8577 -4.4239 17 7 4.6727 -7.1526 -4.2115 18 14 4.6553 -5.1902 -6.1671 19 1 6.0663 -4.9021 -6.5298 20 1 4.0986 -6.1972 -7.1058 21 1 3.8574 -3.9405 -6.2515 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 1.7211 -1.5952 1.2329 26 1 1.7371 -1.7676 -1.2137 27 1 1.6188 -0.2510 -2.1378 28 1 3.2203 1.4178 -1.9429 29 1 4.2977 1.2635 -0.5221 30 1 5.0454 1.3147 -3.3383 31 1 6.1228 1.1604 -1.9175 32 1 5.7416 -0.8806 -3.7576 33 1 6.1577 -1.1766 -2.0422 34 1 5.0527 -2.9885 -1.6390 35 1 3.2828 -3.1311 -1.7636 36 1 3.4702 -3.3028 -4.2302 37 1 5.2400 -3.1603 -4.1056 38 1 4.7750 -7.7609 -4.9601 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159384640.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:53 Heat of formation + Delta-G solvation = -68.716087 kcal Electronic energy + Delta-G solvation = -16323.153638 eV Core-core repulsion = 13778.604678 eV Total energy + Delta-G solvation = -2544.548960 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.21758 -37.27226 -33.73327 -32.23137 -31.86289 -29.62888 -28.88454 -25.43899 -24.23326 -21.97344 -21.15396 -19.82156 -19.75221 -16.82372 -16.39698 -15.91580 -15.26645 -14.93422 -14.49433 -14.13826 -13.69195 -13.20372 -13.09783 -12.82952 -12.49518 -12.19964 -12.02993 -11.72435 -11.55133 -11.23349 -11.02637 -10.90343 -10.82681 -10.48139 -10.35430 -10.06041 -9.84044 -9.79269 -9.60986 -9.18589 -8.50993 -7.96046 -6.02678 -4.00567 3.33628 3.40826 3.47824 4.20592 4.45442 4.48417 4.78245 4.87490 5.00970 5.05941 5.16098 5.23880 5.32336 5.43371 5.59359 5.63207 5.71992 5.79331 5.89198 5.95691 5.99342 6.04469 6.11553 6.17271 6.26934 6.32967 6.39569 6.48275 6.82446 7.20091 7.24452 7.55026 7.62062 7.66318 7.87827 8.55186 9.01424 9.60303 11.10735 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028222 B = 0.006558 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.881224 B = 4268.357207 C = 4803.977106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.102 3.898 3 H 0.096 0.904 4 O -0.566 6.566 5 C -0.136 4.136 6 C 0.064 3.936 7 H 0.054 0.946 8 C -0.118 4.118 9 C -0.124 4.124 10 C 0.034 3.966 11 N -0.511 5.511 12 C 0.061 3.939 13 C -0.003 4.003 14 C -0.521 4.521 15 H 0.070 0.930 16 C 0.067 3.933 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.263 1.263 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.375 0.625 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.029 0.971 35 H 0.063 0.937 36 H 0.023 0.977 37 H 0.009 0.991 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 16.514 6.280 18.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.042 3.958 3 H 0.114 0.886 4 O -0.372 6.372 5 C -0.174 4.174 6 C -0.044 4.044 7 H 0.072 0.928 8 C -0.156 4.156 9 C -0.163 4.163 10 C -0.094 4.094 11 N -0.235 5.235 12 C -0.066 4.066 13 C -0.041 4.041 14 C -0.560 4.560 15 H 0.088 0.912 16 C -0.134 4.134 17 N -0.544 5.544 18 Si 0.707 3.293 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.187 1.187 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.222 0.778 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.028 0.972 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.706 16.975 5.831 18.555 hybrid contribution 0.345 -0.605 -0.459 0.834 sum -4.361 16.370 5.372 17.772 Atomic orbital electron populations 1.22498 0.96677 1.02655 1.02407 1.21946 0.92491 0.96715 0.84612 0.88621 1.86546 1.77379 1.29168 1.44074 1.22225 0.95374 1.01619 0.98201 1.22519 0.94879 0.93858 0.93184 0.92756 1.22344 0.97853 0.96366 0.99085 1.22300 0.97704 0.96702 0.99552 1.23080 0.91196 0.93454 1.01666 1.65424 1.19671 1.05130 1.33321 1.22282 0.99694 0.84921 0.99734 1.19477 0.96576 0.95209 0.92797 1.21111 1.50180 0.89438 0.95233 0.91224 1.24994 0.94533 0.94679 0.99165 1.69922 1.50741 1.02131 1.31616 0.86764 0.78684 0.79177 0.84633 1.20387 1.21460 1.18739 0.92200 0.92123 0.91596 0.77775 0.91245 0.90400 0.91441 0.91820 0.91410 0.91901 0.90308 0.94032 0.95257 0.91838 0.95880 0.97249 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 9.53 37.16 0.35 -1.33 16 2 C 0.10 1.10 3.49 -26.73 -0.09 1.00 16 3 H 0.10 1.00 7.31 -51.93 -0.38 0.62 16 4 O -0.57 -6.73 12.82 -35.23 -0.45 -7.18 16 5 C -0.14 -1.74 4.51 -26.73 -0.12 -1.86 16 6 C 0.06 0.93 2.20 -66.07 -0.15 0.79 16 7 H 0.05 0.86 7.63 -51.93 -0.40 0.46 16 8 C -0.12 -1.46 5.55 -25.35 -0.14 -1.60 16 9 C -0.12 -1.58 7.00 -25.35 -0.18 -1.76 16 10 C 0.03 0.55 6.12 -2.17 -0.01 0.53 16 11 N -0.51 -9.04 4.98 -222.13 -1.11 -10.15 16 12 C 0.06 1.27 4.76 -3.83 -0.02 1.25 16 13 C 0.00 -0.07 4.22 -27.89 -0.12 -0.19 16 14 C -0.52 -15.12 9.66 -34.44 -0.33 -15.46 16 15 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 18 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 21 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.37 3.49 9.05 45.56 0.41 3.90 16 26 H 0.07 0.96 7.25 -51.93 -0.38 0.59 16 27 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 28 H 0.07 0.77 7.82 -51.93 -0.41 0.36 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.30 8.01 -51.93 -0.42 0.89 16 33 H 0.04 0.67 7.68 -51.93 -0.40 0.28 16 34 H 0.03 0.62 7.64 -51.93 -0.40 0.22 16 35 H 0.06 1.31 7.07 -51.93 -0.37 0.94 16 36 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 37 H 0.01 0.23 7.21 -51.93 -0.37 -0.15 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 299.60 15.07 4.51 4.51 Total: -1.00 -31.69 299.60 -7.86 -39.55 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.02 Total: -0.10 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -0.90 Total: -16.72 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.33 Total: -37.63 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.45 Total: -7.18 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.69 -7.86 -39.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159384640.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.167 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds