Wall clock time and date at job start Thu Apr 9 2020 11:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46546 * 2 1 4 4 O 1.42903 * 109.47273 * 119.99584 * 2 1 3 5 5 C 1.53003 * 109.47445 * 240.00180 * 2 1 3 6 6 C 1.52995 * 109.47101 * 175.95782 * 5 2 1 7 7 H 1.08998 * 110.37328 * 57.15434 * 6 5 2 8 8 C 1.54378 * 110.41063 * 294.80224 * 6 5 2 9 9 C 1.54263 * 105.06408 * 217.37397 * 8 6 5 10 10 C 1.54381 * 105.05796 * 359.97438 * 9 8 6 11 11 N 1.48558 * 110.41095 * 179.63425 * 6 5 2 12 12 C 1.46901 * 111.00030 * 277.81564 * 11 6 5 13 13 C 1.52996 * 109.47511 * 164.29160 * 12 11 6 14 14 C 1.50694 * 109.47254 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00274 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99724 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99839 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00315 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47202 * 90.00034 * 18 16 14 20 20 H 1.48500 * 109.47397 * 209.99873 * 18 16 14 21 21 H 1.48504 * 109.47259 * 329.99820 * 18 16 14 22 22 H 1.09003 * 109.46546 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47437 * 299.99976 * 1 2 3 24 24 H 1.08995 * 109.47385 * 60.00730 * 1 2 3 25 25 H 0.96700 * 113.99407 * 60.00666 * 4 2 1 26 26 H 1.08997 * 109.46666 * 295.95544 * 5 2 1 27 27 H 1.08998 * 109.47242 * 55.95344 * 5 2 1 28 28 H 1.09004 * 110.32559 * 336.26889 * 8 6 5 29 29 H 1.09006 * 110.32771 * 98.47382 * 8 6 5 30 30 H 1.09001 * 110.32697 * 118.89591 * 9 8 6 31 31 H 1.08999 * 110.31936 * 241.10473 * 9 8 6 32 32 H 1.09000 * 110.41059 * 142.63058 * 10 9 8 33 33 H 1.08997 * 110.41269 * 264.95984 * 10 9 8 34 34 H 1.08998 * 109.46810 * 284.29343 * 12 11 6 35 35 H 1.09001 * 109.47046 * 44.29524 * 12 11 6 36 36 H 1.09006 * 109.47465 * 300.00546 * 13 12 11 37 37 H 1.09000 * 109.46993 * 59.99696 * 13 12 11 38 38 H 0.97001 * 119.99724 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7212 -1.2493 6 6 3.5666 -0.6337 -1.3011 7 1 4.0018 -1.0552 -0.3950 8 6 4.0160 0.8320 -1.4827 9 6 5.2403 0.7629 -2.4187 10 6 5.4280 -0.7388 -2.7234 11 7 4.0854 -1.3359 -2.5031 12 6 4.1851 -2.7822 -2.2658 13 6 4.3378 -3.5092 -3.6033 14 6 4.4395 -4.9928 -3.3598 15 1 4.3989 -5.3788 -2.3520 16 6 4.5844 -5.8577 -4.4239 17 7 4.6727 -7.1526 -4.2115 18 14 4.6553 -5.1902 -6.1671 19 1 6.0663 -4.9021 -6.5298 20 1 4.0986 -6.1972 -7.1058 21 1 3.8574 -3.9405 -6.2515 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 1.7211 -1.5952 1.2329 26 1 1.7371 -1.7676 -1.2137 27 1 1.6188 -0.2510 -2.1378 28 1 3.2203 1.4178 -1.9429 29 1 4.2977 1.2635 -0.5221 30 1 5.0454 1.3147 -3.3383 31 1 6.1228 1.1604 -1.9175 32 1 5.7416 -0.8806 -3.7576 33 1 6.1577 -1.1766 -2.0422 34 1 5.0527 -2.9885 -1.6390 35 1 3.2828 -3.1311 -1.7636 36 1 3.4702 -3.3028 -4.2302 37 1 5.2400 -3.1603 -4.1056 38 1 4.7750 -7.7609 -4.9601 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159384640.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:53 Heat of formation + Delta-G solvation = -92.073527 kcal Electronic energy + Delta-G solvation = -16324.166493 eV Core-core repulsion = 13778.604678 eV Total energy + Delta-G solvation = -2545.561814 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.39512 -38.26554 -35.64477 -33.83853 -33.10503 -30.86339 -30.34132 -26.59864 -25.97966 -22.90902 -22.74884 -21.33958 -20.89407 -18.99246 -17.37395 -16.89432 -16.57166 -16.33391 -15.93297 -15.74821 -15.12041 -14.76130 -14.24424 -14.11579 -13.73878 -13.67286 -13.38778 -13.09732 -12.81435 -12.60824 -12.42742 -12.11653 -11.83967 -11.82507 -11.69936 -11.60089 -11.45983 -11.39867 -11.28474 -10.82925 -10.77640 -9.38936 -8.32166 -6.36554 1.34131 1.36280 1.49968 2.34850 3.02663 3.03346 3.55734 3.67029 3.81560 4.07232 4.08973 4.22842 4.25792 4.39199 4.42820 4.50584 4.61216 4.63334 4.79904 4.82817 4.92167 4.95910 5.02092 5.06139 5.16773 5.23077 5.26615 5.28508 5.32824 5.41149 5.44464 5.60597 6.05944 6.15978 6.27202 6.70636 6.82664 7.28524 8.84568 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028222 B = 0.006558 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.881224 B = 4268.357207 C = 4803.977106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.107 3.893 3 H 0.105 0.895 4 O -0.582 6.582 5 C -0.131 4.131 6 C 0.061 3.939 7 H 0.039 0.961 8 C -0.112 4.112 9 C -0.116 4.116 10 C 0.025 3.975 11 N -0.519 5.519 12 C 0.075 3.925 13 C 0.006 3.994 14 C -0.535 4.535 15 H 0.031 0.969 16 C 0.008 3.992 17 N -0.950 5.950 18 Si 0.951 3.049 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.250 1.250 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.383 0.617 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.017 0.983 35 H 0.058 0.942 36 H 0.020 0.980 37 H 0.012 0.988 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.049 19.150 5.476 20.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.048 3.952 3 H 0.123 0.877 4 O -0.389 6.389 5 C -0.169 4.169 6 C -0.047 4.047 7 H 0.058 0.942 8 C -0.150 4.150 9 C -0.154 4.154 10 C -0.103 4.103 11 N -0.243 5.243 12 C -0.053 4.053 13 C -0.032 4.032 14 C -0.573 4.573 15 H 0.049 0.951 16 C -0.189 4.189 17 N -0.590 5.590 18 Si 0.775 3.225 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.174 1.174 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.232 0.768 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.035 0.965 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.030 0.970 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.113 19.625 5.044 20.898 hybrid contribution 0.481 -1.482 -0.117 1.562 sum -4.632 18.143 4.927 19.363 Atomic orbital electron populations 1.22450 0.95268 1.02827 1.03245 1.21951 0.93531 0.96560 0.83132 0.87713 1.86515 1.77846 1.30042 1.44493 1.22204 0.94168 1.00955 0.99582 1.22626 0.95845 0.95040 0.91173 0.94248 1.22348 0.98133 0.94548 0.99984 1.22287 0.98712 0.94001 1.00431 1.23192 0.90138 0.95924 1.01050 1.65375 1.20892 1.03055 1.35021 1.21940 0.98889 0.87259 0.97225 1.19328 0.96275 0.92769 0.94795 1.21420 1.50094 0.92043 0.93744 0.95058 1.25964 0.93962 0.94815 1.04166 1.70064 1.51916 1.03707 1.33326 0.85637 0.79420 0.78973 0.78503 1.19148 1.20627 1.17354 0.92414 0.91394 0.90617 0.76783 0.92998 0.90049 0.89859 0.90354 0.90222 0.90013 0.91083 0.94859 0.96517 0.92369 0.96177 0.96982 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 9.53 71.98 0.69 -2.22 16 2 C 0.11 2.10 3.49 30.59 0.11 2.21 16 3 H 0.11 1.88 7.31 -2.39 -0.02 1.86 16 4 O -0.58 -13.12 12.82 -148.98 -1.91 -15.03 16 5 C -0.13 -3.18 4.51 30.59 0.14 -3.04 16 6 C 0.06 1.70 2.20 45.06 0.10 1.80 16 7 H 0.04 1.22 7.63 -2.39 -0.02 1.20 16 8 C -0.11 -2.42 5.55 31.49 0.17 -2.24 16 9 C -0.12 -2.60 7.00 31.49 0.22 -2.38 16 10 C 0.02 0.77 6.12 86.45 0.53 1.30 16 11 N -0.52 -17.93 4.98 -856.67 -4.27 -22.20 16 12 C 0.08 3.17 4.76 86.30 0.41 3.58 16 13 C 0.01 0.31 4.22 29.84 0.13 0.43 16 14 C -0.53 -31.90 9.66 25.60 0.25 -31.65 16 15 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 16 C 0.01 0.48 5.47 84.65 0.46 0.94 16 17 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 18 Si 0.95 45.63 27.47 68.60 1.88 47.52 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 22 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.38 6.94 9.05 -74.06 -0.67 6.27 16 26 H 0.05 1.43 7.25 -2.39 -0.02 1.41 16 27 H 0.08 1.92 8.08 -2.39 -0.02 1.90 16 28 H 0.08 1.56 7.82 -2.39 -0.02 1.55 16 29 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 2.26 8.01 -2.39 -0.02 2.24 16 33 H 0.03 1.06 7.68 -2.39 -0.02 1.05 16 34 H 0.02 0.73 7.64 -2.39 -0.02 0.71 16 35 H 0.06 2.47 7.07 -2.39 -0.02 2.45 16 36 H 0.02 1.00 7.20 -2.38 -0.02 0.98 16 37 H 0.01 0.58 7.21 -2.39 -0.02 0.57 16 38 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -68.47 299.60 -0.51 -68.98 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.29 Total: 12.26 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 3.20 Total: -31.27 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -3.97 Total: -82.45 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -1.91 Total: -15.03 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.52 kcal Total: -68.47 -0.51 -68.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159384640.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.095 kcal (2) G-P(sol) polarization free energy of solvation -68.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds