Wall clock time and date at job start Thu Apr 9 2020 11:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46716 * 2 1 4 4 O 1.42900 * 109.47115 * 240.00387 * 2 1 3 5 5 C 1.52995 * 109.47066 * 120.00263 * 2 1 3 6 6 C 1.53001 * 109.47033 * 184.51268 * 5 2 1 7 7 H 1.08998 * 110.59977 * 308.18350 * 6 5 2 8 8 C 1.54943 * 110.80777 * 71.28550 * 6 5 2 9 9 C 1.54591 * 102.92170 * 155.91570 * 8 6 5 10 10 C 1.53992 * 105.14326 * 338.04285 * 9 8 6 11 11 N 1.47902 * 107.05331 * 358.77423 * 10 9 8 12 12 C 1.46905 * 111.00082 * 145.84857 * 11 10 9 13 13 C 1.53004 * 109.47147 * 75.17058 * 12 11 10 14 14 C 1.50698 * 109.46931 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99861 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99966 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99907 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99983 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47451 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47305 * 120.00607 * 18 16 14 21 21 H 1.48508 * 109.46969 * 240.00339 * 18 16 14 22 22 H 1.08998 * 109.46979 * 299.99252 * 1 2 3 23 23 H 1.08994 * 109.47415 * 59.99886 * 1 2 3 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 0.96699 * 113.99837 * 299.99618 * 4 2 1 26 26 H 1.08999 * 109.47334 * 64.51679 * 5 2 1 27 27 H 1.09000 * 109.47659 * 304.51251 * 5 2 1 28 28 H 1.08995 * 110.72648 * 37.55907 * 8 6 5 29 29 H 1.09000 * 110.72278 * 274.27262 * 8 6 5 30 30 H 1.08999 * 110.31150 * 219.11937 * 9 8 6 31 31 H 1.09005 * 110.30792 * 96.95435 * 9 8 6 32 32 H 1.08994 * 109.92138 * 118.12500 * 10 9 8 33 33 H 1.09001 * 109.91727 * 239.42347 * 10 9 8 34 34 H 1.08996 * 109.47226 * 195.17471 * 12 11 10 35 35 H 1.09002 * 109.46593 * 315.16947 * 12 11 10 36 36 H 1.08999 * 109.46689 * 300.00110 * 13 12 11 37 37 H 1.08992 * 109.46994 * 60.00189 * 13 12 11 38 38 H 0.97004 * 119.99930 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 3.5658 -0.6237 1.3072 7 1 4.0072 -0.9515 0.3660 8 6 4.0125 0.8205 1.6469 9 6 5.4149 0.6127 2.2632 10 6 5.4303 -0.8502 2.7439 11 7 4.0993 -1.4200 2.4418 12 6 4.2038 -2.8411 2.0845 13 6 4.4510 -3.6679 3.3479 14 6 4.5588 -5.1256 2.9812 15 1 4.4613 -5.4316 1.9501 16 6 4.7830 -6.0684 3.9619 17 7 4.9022 -5.6957 5.2174 18 14 4.9174 -7.8753 3.5072 19 1 4.7489 -8.0304 2.0400 20 1 6.2515 -8.3889 3.9088 21 1 3.8589 -8.6429 4.2114 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.7211 -1.5951 -1.2330 26 1 1.7443 -1.7696 1.2096 27 1 1.6122 -0.2564 2.1374 28 1 3.3359 1.2731 2.3716 29 1 4.0743 1.4276 0.7437 30 1 5.5623 1.2892 3.1051 31 1 6.1866 0.7714 1.5098 32 1 6.2020 -1.4075 2.2130 33 1 5.6147 -0.8863 3.8176 34 1 3.2765 -3.1664 1.6130 35 1 5.0328 -2.9812 1.3906 36 1 5.3784 -3.3426 3.8193 37 1 3.6221 -3.5278 4.0417 38 1 5.0596 -6.3591 5.9075 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159384731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:55 Heat of formation + Delta-G solvation = -72.235929 kcal Electronic energy + Delta-G solvation = -16273.461345 eV Core-core repulsion = 13728.759754 eV Total energy + Delta-G solvation = -2544.701592 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.10686 -37.23395 -33.66530 -32.18526 -31.75164 -29.54771 -28.36560 -25.39256 -24.20818 -21.88778 -21.32074 -19.92514 -19.53318 -16.43001 -16.38063 -15.80936 -15.30258 -14.77328 -14.50502 -14.19957 -13.45622 -13.14201 -13.11933 -12.78158 -12.34406 -12.05416 -11.80408 -11.55392 -11.32589 -11.03709 -10.96489 -10.87686 -10.82236 -10.54199 -10.36759 -10.29461 -9.92918 -9.73415 -9.32227 -9.07148 -8.32017 -7.74846 -5.97509 -3.99946 3.31854 3.39179 3.43154 4.25578 4.44746 4.54419 4.89277 4.94184 5.05433 5.11128 5.18923 5.32847 5.38380 5.50983 5.64385 5.68927 5.77029 5.83736 5.99127 6.01552 6.05803 6.16719 6.21747 6.27704 6.37591 6.41528 6.56509 6.58102 7.03194 7.50685 7.57349 7.65032 7.81205 7.93513 8.12289 8.46519 9.08004 9.63673 11.13923 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027404 B = 0.006239 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.517405 B = 4486.939674 C = 5158.937760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.102 3.898 3 H 0.095 0.905 4 O -0.566 6.566 5 C -0.135 4.135 6 C 0.065 3.935 7 H 0.054 0.946 8 C -0.118 4.118 9 C -0.131 4.131 10 C 0.041 3.959 11 N -0.515 5.515 12 C 0.056 3.944 13 C 0.031 3.969 14 C -0.521 4.521 15 H 0.053 0.947 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.375 0.625 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.021 0.979 36 H 0.015 0.985 37 H 0.023 0.977 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.053 12.641 -8.565 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.042 3.958 3 H 0.113 0.887 4 O -0.372 6.372 5 C -0.173 4.173 6 C -0.043 4.043 7 H 0.072 0.928 8 C -0.156 4.156 9 C -0.169 4.169 10 C -0.087 4.087 11 N -0.239 5.239 12 C -0.071 4.071 13 C -0.007 4.007 14 C -0.560 4.560 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.222 0.778 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.039 0.961 36 H 0.033 0.967 37 H 0.041 0.959 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.085 13.166 -8.040 16.244 hybrid contribution 0.387 -1.739 -0.609 1.883 sum -4.698 11.427 -8.650 15.082 Atomic orbital electron populations 1.22498 0.96706 1.02611 1.02386 1.21939 0.92458 0.96696 0.84665 0.88666 1.86543 1.77399 1.29134 1.44112 1.22191 0.95452 1.01588 0.98066 1.22653 0.94692 0.93153 0.93838 0.92806 1.22517 0.96670 0.96394 0.99999 1.22412 0.97097 0.97235 1.00194 1.22787 0.91056 0.93275 1.01604 1.64777 1.20673 1.03740 1.34686 1.22496 0.98919 0.85786 0.99897 1.19024 0.97340 0.92733 0.91574 1.21250 1.49056 0.92114 0.93572 0.92834 1.24995 0.95429 0.98917 0.94985 1.69990 1.49633 1.33706 0.99920 0.86559 0.77627 0.85407 0.78530 1.19795 1.21036 1.20990 0.91573 0.92169 0.92238 0.77819 0.91208 0.90477 0.91112 0.91760 0.91471 0.92090 0.93955 0.90497 0.92422 0.96082 0.96697 0.95859 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 9.54 37.16 0.35 -1.37 16 2 C 0.10 1.13 3.53 -26.73 -0.09 1.04 16 3 H 0.10 1.03 7.47 -51.93 -0.39 0.64 16 4 O -0.57 -6.94 12.77 -35.23 -0.45 -7.39 16 5 C -0.13 -1.79 4.65 -26.73 -0.12 -1.92 16 6 C 0.07 0.99 2.22 -65.78 -0.15 0.85 16 7 H 0.05 0.88 7.55 -51.93 -0.39 0.49 16 8 C -0.12 -1.53 5.86 -24.87 -0.15 -1.68 16 9 C -0.13 -1.78 6.93 -25.38 -0.18 -1.96 16 10 C 0.04 0.71 6.05 -2.75 -0.02 0.69 16 11 N -0.51 -9.65 4.92 -222.62 -1.10 -10.75 16 12 C 0.06 1.22 4.70 -3.82 -0.02 1.21 16 13 C 0.03 0.82 5.09 -27.88 -0.14 0.68 16 14 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.26 13.29 55.43 0.74 -26.53 16 18 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.37 3.60 9.05 45.56 0.41 4.02 16 26 H 0.07 1.01 7.16 -51.93 -0.37 0.64 16 27 H 0.08 1.02 8.01 -51.93 -0.42 0.60 16 28 H 0.07 0.88 7.96 -51.93 -0.41 0.47 16 29 H 0.06 0.74 8.02 -51.93 -0.42 0.33 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.77 7.48 -51.93 -0.39 0.38 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.06 1.22 7.05 -51.93 -0.37 0.86 16 35 H 0.02 0.46 7.66 -51.93 -0.40 0.06 16 36 H 0.01 0.42 7.71 -51.93 -0.40 0.02 16 37 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 303.12 15.07 4.57 4.57 Total: -1.00 -31.31 303.12 -8.22 -39.53 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -6.04 Total: -0.09 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -0.92 Total: -16.19 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.36 Total: -37.28 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.45 Total: -7.39 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.31 -8.22 -39.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159384731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.702 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds