Wall clock time and date at job start Thu Apr 9 2020 11:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46716 * 2 1 4 4 O 1.42900 * 109.47115 * 240.00387 * 2 1 3 5 5 C 1.52995 * 109.47066 * 120.00263 * 2 1 3 6 6 C 1.53001 * 109.47033 * 184.51268 * 5 2 1 7 7 H 1.08998 * 110.59977 * 308.18350 * 6 5 2 8 8 C 1.54943 * 110.80777 * 71.28550 * 6 5 2 9 9 C 1.54591 * 102.92170 * 155.91570 * 8 6 5 10 10 C 1.53992 * 105.14326 * 338.04285 * 9 8 6 11 11 N 1.47902 * 107.05331 * 358.77423 * 10 9 8 12 12 C 1.46905 * 111.00082 * 145.84857 * 11 10 9 13 13 C 1.53004 * 109.47147 * 75.17058 * 12 11 10 14 14 C 1.50698 * 109.46931 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99861 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99966 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99907 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99983 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47451 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47305 * 120.00607 * 18 16 14 21 21 H 1.48508 * 109.46969 * 240.00339 * 18 16 14 22 22 H 1.08998 * 109.46979 * 299.99252 * 1 2 3 23 23 H 1.08994 * 109.47415 * 59.99886 * 1 2 3 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 0.96699 * 113.99837 * 299.99618 * 4 2 1 26 26 H 1.08999 * 109.47334 * 64.51679 * 5 2 1 27 27 H 1.09000 * 109.47659 * 304.51251 * 5 2 1 28 28 H 1.08995 * 110.72648 * 37.55907 * 8 6 5 29 29 H 1.09000 * 110.72278 * 274.27262 * 8 6 5 30 30 H 1.08999 * 110.31150 * 219.11937 * 9 8 6 31 31 H 1.09005 * 110.30792 * 96.95435 * 9 8 6 32 32 H 1.08994 * 109.92138 * 118.12500 * 10 9 8 33 33 H 1.09001 * 109.91727 * 239.42347 * 10 9 8 34 34 H 1.08996 * 109.47226 * 195.17471 * 12 11 10 35 35 H 1.09002 * 109.46593 * 315.16947 * 12 11 10 36 36 H 1.08999 * 109.46689 * 300.00110 * 13 12 11 37 37 H 1.08992 * 109.46994 * 60.00189 * 13 12 11 38 38 H 0.97004 * 119.99930 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 3.5658 -0.6237 1.3072 7 1 4.0072 -0.9515 0.3660 8 6 4.0125 0.8205 1.6469 9 6 5.4149 0.6127 2.2632 10 6 5.4303 -0.8502 2.7439 11 7 4.0993 -1.4200 2.4418 12 6 4.2038 -2.8411 2.0845 13 6 4.4510 -3.6679 3.3479 14 6 4.5588 -5.1256 2.9812 15 1 4.4613 -5.4316 1.9501 16 6 4.7830 -6.0684 3.9619 17 7 4.9022 -5.6957 5.2174 18 14 4.9174 -7.8753 3.5072 19 1 4.7489 -8.0304 2.0400 20 1 6.2515 -8.3889 3.9088 21 1 3.8589 -8.6429 4.2114 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.7211 -1.5951 -1.2330 26 1 1.7443 -1.7696 1.2096 27 1 1.6122 -0.2564 2.1374 28 1 3.3359 1.2731 2.3716 29 1 4.0743 1.4276 0.7437 30 1 5.5623 1.2892 3.1051 31 1 6.1866 0.7714 1.5098 32 1 6.2020 -1.4075 2.2130 33 1 5.6147 -0.8863 3.8176 34 1 3.2765 -3.1664 1.6130 35 1 5.0328 -2.9812 1.3906 36 1 5.3784 -3.3426 3.8193 37 1 3.6221 -3.5278 4.0417 38 1 5.0596 -6.3591 5.9075 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159384731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:55 Heat of formation + Delta-G solvation = -94.714790 kcal Electronic energy + Delta-G solvation = -16274.436102 eV Core-core repulsion = 13728.759754 eV Total energy + Delta-G solvation = -2545.676348 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.36703 -38.26654 -35.66028 -33.67881 -33.09387 -30.64411 -30.11987 -26.60334 -26.09622 -23.07459 -22.81265 -21.15258 -21.05028 -18.55812 -17.45365 -16.82624 -16.56209 -16.53340 -16.06901 -15.42591 -15.03916 -14.55810 -14.23863 -14.16746 -13.65480 -13.49284 -13.24364 -12.97429 -12.81302 -12.64439 -12.47875 -12.31184 -12.13815 -11.86226 -11.66100 -11.52112 -11.43239 -11.35619 -11.16540 -10.80679 -10.57622 -9.27442 -8.21771 -6.33879 1.38726 1.39346 1.52780 2.38851 3.05992 3.11385 3.56974 3.69757 3.81016 4.08323 4.08852 4.21710 4.26619 4.41016 4.46332 4.52254 4.63428 4.65093 4.81246 4.85868 4.93846 5.00844 5.02934 5.06219 5.14791 5.26680 5.30374 5.36121 5.38769 5.45237 5.62436 5.77654 6.07464 6.21326 6.32532 6.83513 6.84362 7.35609 8.90766 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027404 B = 0.006239 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.517405 B = 4486.939674 C = 5158.937760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.109 3.891 3 H 0.105 0.895 4 O -0.581 6.581 5 C -0.130 4.130 6 C 0.063 3.937 7 H 0.044 0.956 8 C -0.110 4.110 9 C -0.123 4.123 10 C 0.034 3.966 11 N -0.529 5.529 12 C 0.076 3.924 13 C 0.041 3.959 14 C -0.545 4.545 15 H 0.059 0.941 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.968 3.032 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.276 1.276 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.384 0.616 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.016 0.984 36 H -0.014 1.014 37 H -0.009 1.009 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.600 13.244 -9.948 17.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.049 3.951 3 H 0.122 0.878 4 O -0.388 6.388 5 C -0.168 4.168 6 C -0.045 4.045 7 H 0.062 0.938 8 C -0.148 4.148 9 C -0.161 4.161 10 C -0.094 4.094 11 N -0.253 5.253 12 C -0.052 4.052 13 C 0.003 3.997 14 C -0.583 4.583 15 H 0.077 0.923 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.792 3.208 19 H -0.185 1.185 20 H -0.203 1.203 21 H -0.201 1.201 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.233 0.767 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.005 0.995 37 H 0.010 0.990 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.639 13.783 -9.437 17.630 hybrid contribution 0.567 -1.903 -0.139 1.991 sum -5.073 11.880 -9.576 16.080 Atomic orbital electron populations 1.22447 0.95201 1.02862 1.03228 1.21926 0.93562 0.96506 0.83064 0.87756 1.86514 1.77851 1.30059 1.44415 1.22177 0.94062 1.01006 0.99559 1.22773 0.95754 0.93997 0.91929 0.93792 1.22527 0.96115 0.94880 1.01243 1.22388 0.98136 0.94311 1.01238 1.22831 0.90043 0.96008 1.00504 1.64697 1.21632 1.02394 1.36609 1.22090 0.98722 0.87454 0.96977 1.18838 0.94524 0.93331 0.92979 1.21651 1.49376 0.93284 0.94027 0.92276 1.25988 0.94633 1.04318 0.94740 1.70127 1.50244 1.35678 1.01188 0.85361 0.77896 0.78727 0.78817 1.18543 1.20298 1.20135 0.90707 0.91323 0.92340 0.76748 0.92873 0.90315 0.90175 0.89352 0.89791 0.90565 0.95378 0.92313 0.92034 0.96592 0.99517 0.99047 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 9.54 71.98 0.69 -2.27 16 2 C 0.11 2.18 3.53 30.60 0.11 2.29 16 3 H 0.10 1.93 7.47 -2.39 -0.02 1.91 16 4 O -0.58 -13.21 12.77 -148.98 -1.90 -15.11 16 5 C -0.13 -3.30 4.65 30.59 0.14 -3.16 16 6 C 0.06 1.86 2.22 45.26 0.10 1.96 16 7 H 0.04 1.40 7.55 -2.39 -0.02 1.38 16 8 C -0.11 -2.57 5.86 31.80 0.19 -2.38 16 9 C -0.12 -3.10 6.93 31.47 0.22 -2.88 16 10 C 0.03 1.21 6.05 86.45 0.52 1.73 16 11 N -0.53 -20.12 4.92 -858.25 -4.22 -24.34 16 12 C 0.08 3.38 4.70 86.30 0.41 3.79 16 13 C 0.04 2.28 5.09 29.85 0.15 2.43 16 14 C -0.54 -32.05 9.11 25.60 0.23 -31.82 16 15 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 16 C 0.00 0.06 5.46 84.65 0.46 0.53 16 17 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16 18 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 19 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.38 6.92 9.05 -74.06 -0.67 6.25 16 26 H 0.05 1.52 7.16 -2.39 -0.02 1.50 16 27 H 0.08 1.97 8.01 -2.39 -0.02 1.95 16 28 H 0.08 1.75 7.96 -2.39 -0.02 1.74 16 29 H 0.09 1.70 8.02 -2.39 -0.02 1.68 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.03 1.05 7.48 -2.39 -0.02 1.03 16 33 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.06 2.67 7.05 -2.39 -0.02 2.65 16 35 H 0.02 0.72 7.66 -2.39 -0.02 0.70 16 36 H -0.01 -0.82 7.71 -2.39 -0.02 -0.84 16 37 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 38 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -68.16 303.12 -0.26 -68.42 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.34 Total: 11.70 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 3.22 Total: -29.77 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -3.94 Total: -82.23 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -1.90 Total: -15.11 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -68.16 -0.26 -68.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159384731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.295 kcal (2) G-P(sol) polarization free energy of solvation -68.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds