Wall clock time and date at job start Thu Apr 9 2020 11:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08991 * 109.47207 * 2 1 4 4 O 1.42901 * 109.47191 * 120.00397 * 2 1 3 5 5 C 1.52999 * 109.46583 * 240.00000 * 2 1 3 6 6 C 1.53005 * 109.47003 * 175.00014 * 5 2 1 7 7 H 1.09006 * 109.42627 * 307.87975 * 6 5 2 8 8 C 1.54856 * 109.45268 * 187.94469 * 6 5 2 9 9 C 1.47093 * 110.18249 * 168.61133 * 8 6 5 10 10 C 1.52561 * 114.32661 * 62.88665 * 9 8 6 11 11 C 1.50876 * 109.35798 * 274.98302 * 10 9 8 12 12 C 1.53951 * 110.09614 * 91.89088 * 11 10 9 13 13 N 1.44663 * 109.32077 * 67.93860 * 6 5 2 14 14 C 1.36930 * 118.81485 * 30.89024 * 13 6 5 15 15 H 1.07995 * 120.00409 * 23.33304 * 14 13 6 16 16 C 1.38816 * 119.99876 * 203.33755 * 14 13 6 17 17 N 1.31621 * 120.00136 * 19.01133 * 16 14 13 18 18 Si 1.86803 * 119.99733 * 199.01967 * 16 14 13 19 19 H 1.48498 * 109.47436 * 59.99525 * 18 16 14 20 20 H 1.48510 * 109.47109 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47092 * 299.99734 * 18 16 14 22 22 H 1.09000 * 109.47113 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46548 * 300.00076 * 1 2 3 24 24 H 1.09003 * 109.46655 * 59.99531 * 1 2 3 25 25 H 0.96705 * 113.99495 * 59.99258 * 4 2 1 26 26 H 1.08999 * 109.47261 * 55.00830 * 5 2 1 27 27 H 1.08999 * 109.47569 * 295.00401 * 5 2 1 28 28 H 1.09007 * 109.32883 * 48.43632 * 8 6 5 29 29 H 1.09005 * 109.33219 * 288.79051 * 8 6 5 30 30 H 1.09004 * 108.51166 * 184.14172 * 9 8 6 31 31 H 1.09001 * 108.51239 * 301.63217 * 9 8 6 32 32 H 1.09003 * 109.49062 * 34.95063 * 10 9 8 33 33 H 1.09007 * 109.49159 * 154.99235 * 10 9 8 34 34 H 1.08996 * 109.36749 * 212.08329 * 11 10 9 35 35 H 1.09001 * 109.36595 * 331.70366 * 11 10 9 36 36 H 1.08996 * 108.94685 * 80.12103 * 12 11 10 37 37 H 1.08994 * 108.94959 * 198.84467 * 12 11 10 38 38 H 0.97008 * 119.99775 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0065 -0.6737 1.1667 5 6 2.0400 -0.7213 -1.2493 6 6 3.5648 -0.6134 -1.3138 7 1 3.8588 0.4318 -1.2164 8 6 4.0638 -1.1650 -2.6720 9 6 5.4816 -0.8254 -2.8676 10 6 6.4237 -1.4442 -1.8395 11 6 6.4781 -0.5623 -0.6165 12 6 5.4209 -1.0128 0.4080 13 7 4.1452 -1.3836 -0.2356 14 6 3.4872 -2.5000 0.2066 15 1 2.7916 -3.0099 -0.4435 16 6 3.7140 -2.9765 1.4905 17 7 4.2455 -2.1881 2.4007 18 14 3.2652 -4.7366 1.9264 19 1 4.0250 -5.6709 1.0575 20 1 3.6053 -4.9965 3.3485 21 1 1.8091 -4.9419 1.7197 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.7210 -1.5953 1.2328 26 1 1.6054 -0.2617 -2.1370 27 1 1.7515 -1.7715 -1.2057 28 1 3.4737 -0.7280 -3.4777 29 1 3.9470 -2.2486 -2.6863 30 1 5.7840 -1.1604 -3.8599 31 1 5.5869 0.2587 -2.8253 32 1 6.0581 -2.4322 -1.5594 33 1 7.4218 -1.5339 -2.2683 34 1 7.4686 -0.6287 -0.1667 35 1 6.2833 0.4702 -0.9065 36 1 5.8038 -1.8733 0.9565 37 1 5.2384 -0.1988 1.1095 38 1 4.4036 -2.5210 3.2981 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163140410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:07 Heat of formation + Delta-G solvation = -35.353262 kcal Electronic energy + Delta-G solvation = -17779.121672 eV Core-core repulsion = 15236.019433 eV Total energy + Delta-G solvation = -2543.102239 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.38237 -36.06924 -33.44827 -32.41935 -30.62130 -29.95959 -26.90386 -25.61030 -23.28944 -22.57112 -20.25283 -19.54937 -18.96099 -16.05682 -15.49701 -14.98991 -14.50908 -14.27142 -13.89716 -13.39087 -13.33123 -12.88823 -12.45514 -12.29656 -11.86318 -11.54626 -11.28536 -11.07024 -10.79149 -10.70528 -10.51590 -10.41901 -10.10110 -9.90236 -9.85946 -9.77043 -9.45209 -9.35314 -9.23079 -8.62494 -7.99775 -6.42617 -5.57428 -2.93692 3.41288 3.50457 3.52317 4.59285 5.34579 5.41342 5.50464 5.58833 5.69933 5.74510 5.79955 5.89501 6.04143 6.17432 6.20870 6.29469 6.37118 6.40073 6.51850 6.56272 6.64714 6.71486 6.79220 6.82648 6.93167 6.98321 7.03574 7.10064 7.24921 7.32368 7.64752 7.87341 7.97216 8.60858 9.21755 9.41274 10.11461 10.59142 11.47716 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.015240 C = 0.010417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.784550 B = 1836.776408 C = 2687.290311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.109 3.891 3 H 0.071 0.929 4 O -0.514 6.514 5 C -0.149 4.149 6 C 0.192 3.808 7 H 0.034 0.966 8 C -0.141 4.141 9 C -0.100 4.100 10 C -0.105 4.105 11 C -0.143 4.143 12 C 0.183 3.817 13 N -0.569 5.569 14 C -0.240 4.240 15 H 0.060 0.940 16 C 0.006 3.994 17 N -0.880 5.880 18 Si 0.881 3.119 19 H -0.289 1.289 20 H -0.294 1.294 21 H -0.287 1.287 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.373 0.627 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.022 0.978 38 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.643 2.973 -7.002 7.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.049 3.951 3 H 0.089 0.911 4 O -0.321 6.321 5 C -0.187 4.187 6 C 0.083 3.917 7 H 0.052 0.948 8 C -0.181 4.181 9 C -0.138 4.138 10 C -0.142 4.142 11 C -0.182 4.182 12 C 0.058 3.942 13 N -0.289 5.289 14 C -0.371 4.371 15 H 0.078 0.922 16 C -0.194 4.194 17 N -0.524 5.524 18 Si 0.712 3.288 19 H -0.216 1.216 20 H -0.220 1.220 21 H -0.213 1.213 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.223 0.777 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.040 0.960 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.320 3.540 -6.670 7.666 hybrid contribution -0.536 -1.472 0.008 1.567 sum -1.857 2.067 -6.662 7.218 Atomic orbital electron populations 1.22599 0.99227 1.01436 1.00876 1.21505 0.89969 0.96096 0.87548 0.91059 1.86825 1.76305 1.29002 1.39945 1.22571 0.97541 1.01672 0.96917 1.20126 0.90499 0.93426 0.87678 0.94812 1.21509 0.95472 1.01635 0.99502 1.20298 0.96290 0.99583 0.97586 1.20928 0.96784 1.01078 0.95438 1.22078 0.99992 0.98246 0.97889 1.20937 0.83224 0.99557 0.90508 1.43475 1.19903 1.27899 1.37648 1.18855 1.22535 1.01044 0.94643 0.92220 1.24830 1.02042 0.96946 0.95533 1.70133 1.47490 1.32638 1.02098 0.86724 0.78026 0.86949 0.77098 1.21561 1.21966 1.21326 0.93042 0.92955 0.93200 0.77654 0.93816 0.90983 0.94042 0.92326 0.94614 0.93783 0.90826 0.94485 0.93521 0.94077 0.90771 0.96012 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 9.53 37.16 0.35 -2.56 16 2 C 0.11 2.09 3.58 -26.73 -0.10 2.00 16 3 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 4 O -0.51 -12.04 10.45 -35.23 -0.37 -12.41 16 5 C -0.15 -2.77 4.23 -26.73 -0.11 -2.88 16 6 C 0.19 3.88 2.00 -67.93 -0.14 3.74 16 7 H 0.03 0.71 8.04 -51.93 -0.42 0.29 16 8 C -0.14 -2.55 5.07 -28.59 -0.14 -2.69 16 9 C -0.10 -1.72 5.15 -29.79 -0.15 -1.87 16 10 C -0.10 -1.93 5.51 -28.02 -0.15 -2.08 16 11 C -0.14 -2.81 5.70 -27.30 -0.16 -2.96 16 12 C 0.18 4.34 4.69 -2.94 -0.01 4.33 16 13 N -0.57 -13.18 1.55 -164.40 -0.25 -13.44 16 14 C -0.24 -5.95 5.67 -15.06 -0.09 -6.03 16 15 H 0.06 1.48 6.38 -52.49 -0.34 1.14 16 16 C 0.01 0.15 3.63 -17.43 -0.06 0.08 16 17 N -0.88 -24.26 10.75 55.49 0.60 -23.67 16 18 Si 0.88 20.74 29.59 -169.99 -5.03 15.71 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.37 8.88 6.57 45.56 0.30 9.18 16 26 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 27 H 0.07 1.43 6.08 -51.93 -0.32 1.11 16 28 H 0.04 0.67 8.05 -51.92 -0.42 0.25 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.74 7.35 -51.93 -0.38 0.35 16 32 H 0.07 1.54 7.48 -51.93 -0.39 1.15 16 33 H 0.04 0.61 8.14 -51.92 -0.42 0.18 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.04 0.78 7.32 -51.93 -0.38 0.40 16 36 H 0.07 1.96 6.19 -51.93 -0.32 1.64 16 37 H 0.02 0.58 8.07 -51.93 -0.42 0.16 16 38 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 281.47 15.07 4.24 4.24 Total: -1.00 -26.45 281.47 -7.59 -34.04 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.01 Total: 6.44 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -0.76 Total: -10.93 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.34 Total: -37.10 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.37 Total: -12.41 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.45 -7.59 -34.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163140410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.313 kcal (2) G-P(sol) polarization free energy of solvation -26.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds