Wall clock time and date at job start Thu Apr 9 2020 11:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00350 * 2 1 4 4 H 1.09002 * 109.46880 * 29.99836 * 3 2 1 5 5 C 1.52999 * 109.47162 * 270.00457 * 3 2 1 6 6 C 1.53005 * 109.47159 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47452 * 59.99536 * 6 5 3 8 8 C 1.53002 * 109.46817 * 300.00239 * 7 6 5 9 9 H 1.08992 * 109.47063 * 299.99823 * 8 7 6 10 10 N 1.46901 * 109.46860 * 179.97438 * 8 7 6 11 11 C 1.46903 * 111.00228 * 306.04482 * 10 8 7 12 12 C 1.46906 * 110.99853 * 70.00153 * 10 8 7 13 13 C 1.50695 * 109.46947 * 170.00153 * 12 10 8 14 14 H 1.08002 * 120.00327 * 359.97438 * 13 12 10 15 15 C 1.37885 * 119.99996 * 180.02562 * 13 12 10 16 16 N 1.31519 * 119.99728 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00211 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47089 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47229 * 119.99912 * 17 15 13 20 20 H 1.48497 * 109.47331 * 239.99851 * 17 15 13 21 21 C 1.52997 * 109.47503 * 149.99960 * 3 2 1 22 22 H 1.09000 * 109.47064 * 59.99982 * 1 2 3 23 23 H 1.09005 * 109.47129 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47217 * 299.99952 * 1 2 3 25 25 H 1.09000 * 109.47486 * 59.99398 * 5 3 2 26 26 H 1.09002 * 109.46716 * 299.99480 * 5 3 2 27 27 H 1.09002 * 109.46935 * 299.99411 * 6 5 3 28 28 H 1.09001 * 109.46812 * 179.97438 * 6 5 3 29 29 H 1.08993 * 109.47194 * 179.97438 * 7 6 5 30 30 H 1.09002 * 109.46695 * 59.99734 * 7 6 5 31 31 H 1.09006 * 109.46785 * 60.00195 * 11 10 8 32 32 H 1.09005 * 109.47133 * 179.97438 * 11 10 8 33 33 H 1.08990 * 109.47113 * 300.00366 * 11 10 8 34 34 H 1.09006 * 109.46871 * 289.99755 * 12 10 8 35 35 H 1.09000 * 109.47257 * 49.99792 * 12 10 8 36 36 H 0.96996 * 120.00250 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.47153 * 60.00043 * 21 3 2 38 38 H 1.09001 * 109.46832 * 300.00234 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2176 1.7713 -1.4425 6 6 2.8395 3.1693 -1.4425 7 6 4.1880 3.1277 -0.7211 8 6 3.9805 2.6618 0.7214 9 1 3.3150 3.3554 1.2351 10 7 5.2755 2.6213 1.4139 11 6 6.2454 1.8069 0.6695 12 6 5.7924 3.9771 1.6433 13 6 6.9852 3.9111 2.5619 14 1 7.3250 2.9575 2.9381 15 6 7.6422 5.0684 2.9230 16 7 7.2280 6.2297 2.4652 17 14 9.1202 4.9867 4.0622 18 1 9.3809 3.5729 4.4342 19 1 10.3100 5.5445 3.3702 20 1 8.8446 5.7779 5.2882 21 6 3.3589 1.2632 0.7212 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.2568 1.8014 -1.9563 26 1 2.8829 1.0774 -1.9563 27 1 2.1738 3.8630 -0.9288 28 1 2.9876 3.5010 -2.4702 29 1 4.6312 4.1235 -0.7215 30 1 4.8536 2.4340 -1.2348 31 1 6.3928 2.2339 -0.3225 32 1 7.1953 1.7942 1.2040 33 1 5.8679 0.7889 0.5744 34 1 6.0904 4.4180 0.6920 35 1 5.0153 4.5898 2.1002 36 1 7.6903 7.0438 2.7189 37 1 4.0242 0.5693 0.2074 38 1 3.2111 0.9313 1.7489 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226545578.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:56 Heat of formation + Delta-G solvation = -77.578820 kcal Electronic energy + Delta-G solvation = -16543.185167 eV Core-core repulsion = 13998.251890 eV Total energy + Delta-G solvation = -2544.933277 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.67596 -38.55693 -36.06851 -34.47909 -31.46023 -30.34125 -28.88992 -27.29506 -26.76656 -23.98229 -23.33403 -21.73326 -20.36593 -18.54690 -17.51601 -16.89872 -16.60422 -16.08145 -15.83346 -15.47078 -15.38906 -14.84933 -14.66430 -14.18743 -13.87183 -13.40608 -13.24797 -13.06059 -12.73030 -12.66031 -12.57552 -12.32284 -12.13301 -12.00968 -11.81709 -11.55938 -11.43120 -11.33243 -11.19166 -10.61320 -10.39987 -8.90404 -8.19978 -6.29876 1.40708 1.41466 1.55216 2.40337 2.74372 3.12391 3.40453 3.74590 3.94669 4.02424 4.15313 4.19929 4.36918 4.46026 4.51651 4.57508 4.58963 4.63409 4.65240 4.74392 4.87559 4.95791 5.03867 5.06954 5.12832 5.14690 5.17944 5.27308 5.30126 5.43466 5.46026 5.66851 6.07084 6.31736 6.36749 6.68430 6.87216 7.39878 8.91102 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.049651 B = 0.005685 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.795820 B = 4923.782094 C = 5136.835527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.095 3.905 4 H 0.065 0.935 5 C -0.130 4.130 6 C -0.105 4.105 7 C -0.149 4.149 8 C 0.088 3.912 9 H 0.062 0.938 10 N -0.546 5.546 11 C 0.037 3.963 12 C 0.211 3.789 13 C -0.525 4.525 14 H 0.061 0.939 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.278 1.278 21 C -0.095 4.095 22 H 0.052 0.948 23 H 0.098 0.902 24 H 0.045 0.955 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.019 0.981 32 H 0.054 0.946 33 H 0.075 0.925 34 H -0.031 1.031 35 H -0.001 1.001 36 H 0.264 0.736 37 H 0.068 0.932 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.708 -9.554 -7.567 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C 0.037 3.963 4 H 0.083 0.917 5 C -0.167 4.167 6 C -0.143 4.143 7 C -0.188 4.188 8 C -0.021 4.021 9 H 0.080 0.920 10 N -0.268 5.268 11 C -0.111 4.111 12 C 0.085 3.915 13 C -0.563 4.563 14 H 0.080 0.920 15 C -0.196 4.196 16 N -0.576 5.576 17 Si 0.794 3.206 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.204 1.204 21 C -0.133 4.133 22 H 0.070 0.930 23 H 0.116 0.884 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.094 0.906 34 H -0.014 1.014 35 H 0.017 0.983 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.627 -9.770 -7.082 16.757 hybrid contribution 0.816 1.133 -0.131 1.402 sum -10.811 -8.637 -7.213 15.605 Atomic orbital electron populations 1.22972 0.79747 1.03754 1.00715 1.87867 1.21268 1.28154 1.95223 1.22055 0.94113 0.84285 0.95860 0.91687 1.21955 1.01802 0.96498 0.96484 1.21384 0.95127 0.96975 1.00832 1.22179 0.98951 1.00507 0.97182 1.21638 0.91475 0.96596 0.92383 0.92001 1.62184 1.03245 1.14650 1.46763 1.22258 0.96254 0.97128 0.95484 1.19338 0.93841 0.84752 0.93616 1.21544 1.12909 0.93344 1.28487 0.92041 1.25901 1.00792 0.94842 0.98063 1.70092 1.42467 0.98530 1.46464 0.85339 0.78511 0.78496 0.78302 1.18813 1.20338 1.20393 1.21478 0.95357 0.95812 1.00689 0.92968 0.88395 0.93627 0.90101 0.91489 0.91686 0.90428 0.94213 0.91542 0.96278 0.92764 0.90650 1.01378 0.98320 0.92712 0.91378 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.82 113.37 1.23 1.64 16 2 O -0.41 -10.13 10.35 -148.98 -1.54 -11.67 16 3 C 0.09 2.39 2.61 30.59 0.08 2.47 16 4 H 0.07 1.55 7.79 -2.39 -0.02 1.54 16 5 C -0.13 -2.88 5.54 30.60 0.17 -2.71 16 6 C -0.11 -2.59 5.92 30.60 0.18 -2.41 16 7 C -0.15 -4.90 4.45 30.59 0.14 -4.76 16 8 C 0.09 3.19 2.19 44.93 0.10 3.29 16 9 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 10 N -0.55 -24.26 4.70 -901.49 -4.24 -28.50 16 11 C 0.04 1.46 8.59 127.69 1.10 2.56 16 12 C 0.21 11.46 4.29 85.55 0.37 11.83 16 13 C -0.52 -30.37 8.46 25.60 0.22 -30.16 16 14 H 0.06 3.51 7.12 -2.91 -0.02 3.49 16 15 C 0.00 0.11 5.46 84.66 0.46 0.57 16 16 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 17 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 18 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 C -0.10 -2.92 4.78 30.61 0.15 -2.77 16 22 H 0.05 0.74 7.87 -2.39 -0.02 0.73 16 23 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 24 H 0.05 0.73 8.08 -2.39 -0.02 0.71 16 25 H 0.08 1.47 7.87 -2.39 -0.02 1.45 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.04 1.53 6.91 -2.39 -0.02 1.51 16 30 H 0.07 2.14 6.33 -2.39 -0.02 2.12 16 31 H 0.02 0.74 6.21 -2.38 -0.01 0.72 16 32 H 0.05 2.33 6.76 -2.38 -0.02 2.31 16 33 H 0.07 2.54 6.47 -2.39 -0.02 2.53 16 34 H -0.03 -1.83 7.06 -2.38 -0.02 -1.85 16 35 H 0.00 -0.08 7.93 -2.39 -0.02 -0.10 16 36 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 37 H 0.07 2.08 6.55 -2.39 -0.02 2.07 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -64.83 292.22 1.72 -63.11 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.01 Total: 7.22 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 4.18 Total: -20.46 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -3.95 Total: -85.12 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -1.54 Total: -11.67 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.83 1.72 -63.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226545578.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.468 kcal (2) G-P(sol) polarization free energy of solvation -64.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds