Wall clock time and date at job start Thu Apr 9 2020 12:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46887 * 2 1 4 4 C 1.50697 * 109.47463 * 120.00538 * 2 1 3 5 5 H 1.08000 * 120.00242 * 120.00304 * 4 2 1 6 6 C 1.37874 * 119.99754 * 299.99450 * 4 2 1 7 7 N 1.31509 * 120.00202 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00134 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47425 * 89.99651 * 8 6 4 10 10 H 1.48500 * 109.47253 * 210.00008 * 8 6 4 11 11 H 1.48505 * 109.47141 * 329.99343 * 8 6 4 12 12 N 1.46909 * 109.47086 * 240.00243 * 2 1 3 13 13 C 1.46893 * 110.99828 * 306.04617 * 12 2 1 14 14 C 1.46899 * 110.99558 * 69.99796 * 12 2 1 15 15 C 1.53005 * 109.47102 * 170.00394 * 14 12 2 16 16 H 1.08998 * 109.48254 * 60.01816 * 15 14 12 17 17 C 1.53090 * 109.49235 * 180.02562 * 15 14 12 18 18 C 1.53181 * 109.16481 * 177.59797 * 17 15 14 19 19 C 1.53186 * 109.02951 * 303.01710 * 18 17 15 20 20 C 1.53087 * 109.16665 * 56.98173 * 19 18 17 21 21 O 1.42905 * 109.41504 * 302.39123 * 20 19 18 22 22 H 1.08998 * 109.47129 * 299.99650 * 1 2 3 23 23 H 1.08998 * 109.47200 * 59.99673 * 1 2 3 24 24 H 1.09002 * 109.46887 * 180.02562 * 1 2 3 25 25 H 0.97005 * 120.00562 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.47356 * 183.95238 * 13 12 2 27 27 H 1.09000 * 109.47349 * 303.95407 * 13 12 2 28 28 H 1.09004 * 109.47323 * 63.95157 * 13 12 2 29 29 H 1.09000 * 109.47545 * 50.00316 * 14 12 2 30 30 H 1.09002 * 109.47274 * 289.99806 * 14 12 2 31 31 H 1.09007 * 109.51738 * 297.49873 * 17 15 14 32 32 H 1.08996 * 109.52412 * 57.68848 * 17 15 14 33 33 H 1.08997 * 109.54268 * 62.87505 * 18 17 15 34 34 H 1.08995 * 109.54695 * 183.15097 * 18 17 15 35 35 H 1.09001 * 109.51857 * 176.88572 * 19 18 17 36 36 H 1.08995 * 109.52201 * 297.01063 * 19 18 17 37 37 H 1.08994 * 109.48330 * 182.40659 * 20 19 18 38 38 H 1.09001 * 109.48123 * 62.37055 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 2.1382 -0.8591 3.5564 8 14 0.6250 1.2789 2.6542 9 1 -0.8026 0.8726 2.6999 10 1 0.9762 1.9950 3.9068 11 1 0.8473 2.1765 1.4921 12 7 2.0197 -0.6925 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7528 0.0973 -2.4090 15 6 2.4883 -0.5255 -3.5974 16 1 2.1386 -1.5470 -3.7465 17 6 2.2110 0.2977 -4.8581 18 6 2.9982 -0.2968 -6.0300 19 6 4.4867 -0.3241 -5.6692 20 6 4.6761 -1.1232 -4.3773 21 8 3.8932 -0.5356 -3.3361 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.9037 -0.5280 4.4375 26 1 1.8663 -2.5520 -2.1649 27 1 1.6466 -2.5987 -0.3992 28 1 0.3555 -1.9520 -1.4399 29 1 2.1024 1.1190 -2.2604 30 1 0.6813 0.1054 -2.6087 31 1 1.1450 0.2700 -5.0840 32 1 2.5232 1.3292 -4.6955 33 1 2.6515 -1.3117 -6.2246 34 1 2.8495 0.3174 -6.9181 35 1 5.0482 -0.7965 -6.4753 36 1 4.8451 0.6949 -5.5242 37 1 5.7281 -1.1100 -4.0925 38 1 4.3553 -2.1527 -4.5362 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252451104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:18 Heat of formation + Delta-G solvation = -42.274815 kcal Electronic energy + Delta-G solvation = -16751.960068 eV Core-core repulsion = 14208.557688 eV Total energy + Delta-G solvation = -2543.402380 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.32559 -37.12725 -33.46630 -32.91420 -31.52403 -29.42295 -26.93300 -25.25629 -24.80092 -23.62799 -21.46209 -20.12094 -19.11971 -16.56729 -16.11841 -15.90638 -15.11391 -14.79341 -14.38080 -14.18767 -13.79276 -13.49606 -12.78852 -12.62231 -12.54539 -12.21329 -12.08536 -11.51367 -11.46339 -11.09421 -11.09017 -10.98900 -10.72673 -10.61987 -10.37343 -9.99780 -9.82692 -9.43723 -9.14348 -8.96725 -8.51936 -7.20108 -5.99843 -3.96845 3.29322 3.40089 3.42383 4.05602 4.45192 4.61761 4.79898 4.87557 4.95687 5.22298 5.28403 5.32210 5.47440 5.51564 5.68736 5.76635 5.82835 5.84718 5.93672 6.00630 6.08028 6.15365 6.19747 6.26883 6.29748 6.32367 6.44752 6.59863 6.76808 6.93036 7.25190 7.58860 7.72852 8.03161 8.18495 8.74899 9.09532 9.62736 11.13539 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046272 B = 0.006569 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.966750 B = 4261.425493 C = 4449.628098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.180 3.820 3 H 0.039 0.961 4 C -0.496 4.496 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.902 5.902 8 Si 0.886 3.114 9 H -0.282 1.282 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.513 5.513 13 C 0.032 3.968 14 C 0.059 3.941 15 C 0.097 3.903 16 H 0.054 0.946 17 C -0.152 4.152 18 C -0.120 4.120 19 C -0.157 4.157 20 C 0.058 3.942 21 O -0.352 6.352 22 H 0.044 0.956 23 H 0.026 0.974 24 H 0.056 0.944 25 H 0.263 0.737 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.014 0.986 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.238 1.099 -17.922 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.072 3.928 3 H 0.056 0.944 4 C -0.535 4.535 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.541 5.541 8 Si 0.717 3.283 9 H -0.209 1.209 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.235 5.235 13 C -0.116 4.116 14 C -0.070 4.070 15 C 0.038 3.962 16 H 0.072 0.928 17 C -0.190 4.190 18 C -0.158 4.158 19 C -0.194 4.194 20 C -0.019 4.019 21 O -0.270 6.270 22 H 0.062 0.938 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.032 0.968 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.366 1.122 -17.494 17.534 hybrid contribution -1.694 0.813 -0.167 1.886 sum -1.328 1.935 -17.661 17.816 Atomic orbital electron populations 1.22839 1.01906 1.00999 0.98764 1.19805 0.88471 0.95321 0.89171 0.94367 1.20949 1.31113 1.13656 0.87741 0.89987 1.24916 0.95999 0.96567 0.95852 1.69882 1.45959 1.40421 0.97800 0.86892 0.80470 0.84072 0.76876 1.20900 1.22475 1.19392 1.62087 1.58326 1.02038 1.01056 1.22316 0.95517 0.91914 1.01889 1.22115 0.96036 0.98364 0.90492 1.22146 0.82548 0.97945 0.93527 0.92810 1.22221 1.00365 1.00878 0.95563 1.21561 0.95257 1.01024 0.97912 1.22210 0.96738 1.01890 0.98594 1.22515 0.96462 0.95378 0.87590 1.88161 1.16592 1.81141 1.41084 0.93760 0.95462 0.92465 0.92743 0.93686 0.90205 0.96778 0.90802 0.94431 0.91257 0.91031 0.92079 0.91873 0.91440 0.91184 0.89193 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.13 7.92 37.16 0.29 -3.84 16 2 C 0.18 4.39 1.90 -68.86 -0.13 4.26 16 3 H 0.04 0.98 6.99 -51.93 -0.36 0.61 16 4 C -0.50 -14.22 8.49 -34.44 -0.29 -14.51 16 5 H 0.08 2.57 7.37 -52.49 -0.39 2.19 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 7 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 8 Si 0.89 22.33 24.37 -169.99 -4.14 18.19 16 9 H -0.28 -6.92 6.87 56.52 0.39 -6.53 16 10 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 11 H -0.27 -6.51 6.53 56.52 0.37 -6.15 16 12 N -0.51 -11.06 4.57 -236.28 -1.08 -12.14 16 13 C 0.03 0.63 8.45 60.06 0.51 1.14 16 14 C 0.06 1.04 4.22 -3.82 -0.02 1.02 16 15 C 0.10 1.47 2.51 -26.68 -0.07 1.40 16 16 H 0.05 0.81 6.55 -51.93 -0.34 0.47 16 17 C -0.15 -1.82 5.42 -26.59 -0.14 -1.96 16 18 C -0.12 -1.22 6.03 -26.54 -0.16 -1.38 16 19 C -0.16 -1.63 6.14 -26.59 -0.16 -1.79 16 20 C 0.06 0.74 6.84 37.20 0.25 0.99 16 21 O -0.35 -5.98 10.27 -35.23 -0.36 -6.34 16 22 H 0.04 1.03 3.27 -51.93 -0.17 0.86 16 23 H 0.03 0.52 6.91 -51.93 -0.36 0.16 16 24 H 0.06 1.24 6.42 -51.93 -0.33 0.91 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.04 0.78 6.47 -51.93 -0.34 0.44 16 27 H 0.08 1.75 6.76 -51.93 -0.35 1.40 16 28 H 0.01 0.26 6.46 -51.93 -0.34 -0.08 16 29 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 30 H 0.04 0.62 7.06 -51.93 -0.37 0.25 16 31 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 282.68 15.07 4.26 4.26 Total: -1.00 -31.15 282.68 -6.88 -38.03 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.32 Total: -2.02 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -0.01 Total: -12.78 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: -0.31 Total: -39.33 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.36 Total: -6.34 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.14 Total: 18.19 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.15 -6.88 -38.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252451104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.247 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds