Wall clock time and date at job start Thu Apr 9 2020 12:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46887 * 2 1 4 4 C 1.50697 * 109.47463 * 120.00538 * 2 1 3 5 5 H 1.08000 * 120.00242 * 120.00304 * 4 2 1 6 6 C 1.37874 * 119.99754 * 299.99450 * 4 2 1 7 7 N 1.31509 * 120.00202 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00134 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47425 * 89.99651 * 8 6 4 10 10 H 1.48500 * 109.47253 * 210.00008 * 8 6 4 11 11 H 1.48505 * 109.47141 * 329.99343 * 8 6 4 12 12 N 1.46909 * 109.47086 * 240.00243 * 2 1 3 13 13 C 1.46893 * 110.99828 * 306.04617 * 12 2 1 14 14 C 1.46899 * 110.99558 * 69.99796 * 12 2 1 15 15 C 1.53005 * 109.47102 * 170.00394 * 14 12 2 16 16 H 1.08998 * 109.48254 * 60.01816 * 15 14 12 17 17 C 1.53090 * 109.49235 * 180.02562 * 15 14 12 18 18 C 1.53181 * 109.16481 * 177.59797 * 17 15 14 19 19 C 1.53186 * 109.02951 * 303.01710 * 18 17 15 20 20 C 1.53087 * 109.16665 * 56.98173 * 19 18 17 21 21 O 1.42905 * 109.41504 * 302.39123 * 20 19 18 22 22 H 1.08998 * 109.47129 * 299.99650 * 1 2 3 23 23 H 1.08998 * 109.47200 * 59.99673 * 1 2 3 24 24 H 1.09002 * 109.46887 * 180.02562 * 1 2 3 25 25 H 0.97005 * 120.00562 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.47356 * 183.95238 * 13 12 2 27 27 H 1.09000 * 109.47349 * 303.95407 * 13 12 2 28 28 H 1.09004 * 109.47323 * 63.95157 * 13 12 2 29 29 H 1.09000 * 109.47545 * 50.00316 * 14 12 2 30 30 H 1.09002 * 109.47274 * 289.99806 * 14 12 2 31 31 H 1.09007 * 109.51738 * 297.49873 * 17 15 14 32 32 H 1.08996 * 109.52412 * 57.68848 * 17 15 14 33 33 H 1.08997 * 109.54268 * 62.87505 * 18 17 15 34 34 H 1.08995 * 109.54695 * 183.15097 * 18 17 15 35 35 H 1.09001 * 109.51857 * 176.88572 * 19 18 17 36 36 H 1.08995 * 109.52201 * 297.01063 * 19 18 17 37 37 H 1.08994 * 109.48330 * 182.40659 * 20 19 18 38 38 H 1.09001 * 109.48123 * 62.37055 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 2.1382 -0.8591 3.5564 8 14 0.6250 1.2789 2.6542 9 1 -0.8026 0.8726 2.6999 10 1 0.9762 1.9950 3.9068 11 1 0.8473 2.1765 1.4921 12 7 2.0197 -0.6925 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7528 0.0973 -2.4090 15 6 2.4883 -0.5255 -3.5974 16 1 2.1386 -1.5470 -3.7465 17 6 2.2110 0.2977 -4.8581 18 6 2.9982 -0.2968 -6.0300 19 6 4.4867 -0.3241 -5.6692 20 6 4.6761 -1.1232 -4.3773 21 8 3.8932 -0.5356 -3.3361 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.9037 -0.5280 4.4375 26 1 1.8663 -2.5520 -2.1649 27 1 1.6466 -2.5987 -0.3992 28 1 0.3555 -1.9520 -1.4399 29 1 2.1024 1.1190 -2.2604 30 1 0.6813 0.1054 -2.6087 31 1 1.1450 0.2700 -5.0840 32 1 2.5232 1.3292 -4.6955 33 1 2.6515 -1.3117 -6.2246 34 1 2.8495 0.3174 -6.9181 35 1 5.0482 -0.7965 -6.4753 36 1 4.8451 0.6949 -5.5242 37 1 5.7281 -1.1100 -4.0925 38 1 4.3553 -2.1527 -4.5362 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252451104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:17 Heat of formation + Delta-G solvation = -64.800053 kcal Electronic energy + Delta-G solvation = -16752.936836 eV Core-core repulsion = 14208.557688 eV Total energy + Delta-G solvation = -2544.379148 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.47589 -38.73835 -34.85343 -34.43386 -33.04291 -31.07143 -28.28078 -27.20322 -26.27142 -24.73470 -22.83334 -21.09524 -20.87784 -18.67935 -17.29923 -17.26536 -16.59507 -16.34125 -15.58634 -15.45202 -15.28692 -14.89354 -14.52103 -14.07775 -13.95895 -13.61863 -13.43350 -13.09263 -12.96796 -12.77884 -12.39561 -12.30903 -12.05872 -11.91599 -11.81799 -11.52633 -11.40614 -11.16650 -10.91806 -10.73531 -10.20464 -8.83794 -8.25850 -6.27991 1.29321 1.36147 1.46162 2.33324 2.96570 3.08037 3.24879 3.91162 3.99288 4.01129 4.13449 4.22990 4.37985 4.42631 4.48836 4.50431 4.56247 4.64640 4.71896 4.76042 4.82309 4.84164 4.94461 5.00519 5.03404 5.12642 5.16756 5.23315 5.24919 5.43242 5.45076 5.65399 6.07405 6.43446 6.55768 6.75842 6.79432 7.36312 8.91429 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046272 B = 0.006569 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.966750 B = 4261.425493 C = 4449.628098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.183 3.817 3 H 0.028 0.972 4 C -0.500 4.500 5 H 0.035 0.965 6 C 0.009 3.991 7 N -0.951 5.951 8 Si 0.952 3.048 9 H -0.266 1.266 10 H -0.298 1.298 11 H -0.250 1.250 12 N -0.537 5.537 13 C 0.040 3.960 14 C 0.058 3.942 15 C 0.098 3.902 16 H 0.056 0.944 17 C -0.147 4.147 18 C -0.118 4.118 19 C -0.151 4.151 20 C 0.050 3.950 21 O -0.391 6.391 22 H 0.036 0.964 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.265 0.735 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.031 0.969 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.704 2.300 -20.580 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.075 3.925 3 H 0.046 0.954 4 C -0.539 4.539 5 H 0.053 0.947 6 C -0.188 4.188 7 N -0.592 5.592 8 Si 0.779 3.221 9 H -0.192 1.192 10 H -0.226 1.226 11 H -0.175 1.175 12 N -0.259 5.259 13 C -0.108 4.108 14 C -0.070 4.070 15 C 0.040 3.960 16 H 0.074 0.926 17 C -0.185 4.185 18 C -0.155 4.155 19 C -0.189 4.189 20 C -0.027 4.027 21 O -0.311 6.311 22 H 0.054 0.946 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.101 2.317 -20.193 20.355 hybrid contribution -1.118 0.338 0.624 1.324 sum -2.219 2.655 -19.569 19.872 Atomic orbital electron populations 1.22684 0.99652 1.01468 1.00012 1.19579 0.90094 0.94158 0.88678 0.95390 1.21186 1.30177 1.12392 0.90115 0.94690 1.25791 0.97620 1.00032 0.95312 1.70043 1.48016 1.42654 0.98502 0.85813 0.79024 0.80020 0.77220 1.19192 1.22623 1.17459 1.61945 1.59288 1.02982 1.01735 1.22209 0.96598 0.90929 1.01064 1.22218 0.97640 0.97506 0.89613 1.22151 0.81722 0.98429 0.93726 0.92616 1.22176 1.01785 0.99984 0.94534 1.21583 0.94449 1.01759 0.97738 1.22167 0.97572 1.01304 0.97836 1.22723 0.96077 0.95933 0.87963 1.88095 1.17717 1.81839 1.43423 0.94559 0.91965 0.92463 0.92618 0.91435 0.93704 0.95115 0.91673 0.92453 0.89542 0.91540 0.91313 0.89854 0.89135 0.91748 0.89022 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.52 7.92 71.98 0.57 -6.95 16 2 C 0.18 8.85 1.90 44.17 0.08 8.94 16 3 H 0.03 1.41 6.99 -2.39 -0.02 1.40 16 4 C -0.50 -29.56 8.49 25.60 0.22 -29.34 16 5 H 0.03 2.33 7.37 -2.91 -0.02 2.31 16 6 C 0.01 0.54 5.45 84.65 0.46 1.00 16 7 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 8 Si 0.95 45.90 24.37 68.60 1.67 47.57 16 9 H -0.27 -12.08 6.87 99.48 0.68 -11.40 16 10 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 11 H -0.25 -11.25 6.53 99.48 0.65 -10.60 16 12 N -0.54 -22.92 4.57 -901.46 -4.12 -27.04 16 13 C 0.04 1.56 8.45 127.69 1.08 2.64 16 14 C 0.06 1.95 4.22 86.30 0.36 2.32 16 15 C 0.10 2.78 2.51 30.63 0.08 2.85 16 16 H 0.06 1.54 6.55 -2.39 -0.02 1.52 16 17 C -0.15 -3.06 5.42 30.68 0.17 -2.89 16 18 C -0.12 -1.98 6.03 30.72 0.19 -1.79 16 19 C -0.15 -2.74 6.14 30.69 0.19 -2.55 16 20 C 0.05 1.20 6.84 72.01 0.49 1.69 16 21 O -0.39 -13.01 10.27 -148.98 -1.53 -14.54 16 22 H 0.04 1.57 3.27 -2.39 -0.01 1.56 16 23 H 0.06 2.16 6.91 -2.39 -0.02 2.14 16 24 H 0.06 2.37 6.42 -2.39 -0.02 2.35 16 25 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 26 H 0.07 2.27 6.47 -2.39 -0.02 2.26 16 27 H 0.04 2.03 6.76 -2.39 -0.02 2.01 16 28 H 0.03 1.07 6.46 -2.38 -0.02 1.06 16 29 H 0.06 2.28 7.93 -2.39 -0.02 2.26 16 30 H 0.06 1.69 7.06 -2.39 -0.02 1.67 16 31 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -69.22 282.68 1.14 -68.08 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.94 Total: 10.68 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: 3.89 Total: -24.10 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -3.82 Total: -87.69 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -1.53 Total: -14.54 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.67 Total: 47.57 kcal Total: -69.22 1.14 -68.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252451104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.276 kcal (2) G-P(sol) polarization free energy of solvation -69.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds