Wall clock time and date at job start Thu Apr 9 2020 11:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 111.00230 * 2 1 4 4 C 1.52999 * 109.46675 * 293.94999 * 3 2 1 5 5 C 1.53001 * 109.47058 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47214 * 179.97438 * 5 4 3 7 7 H 1.08002 * 119.99724 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99941 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00017 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99852 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47384 * 90.00070 * 10 8 6 12 12 H 1.48500 * 109.47200 * 210.00063 * 10 8 6 13 13 H 1.48499 * 109.47149 * 330.00047 * 10 8 6 14 14 C 1.46903 * 110.99632 * 123.95063 * 2 1 3 15 15 C 1.53008 * 109.47002 * 164.00174 * 14 2 1 16 16 H 1.08996 * 109.46927 * 58.49606 * 15 14 2 17 17 O 1.42898 * 109.47009 * 298.49425 * 15 14 2 18 18 C 1.52997 * 109.46915 * 178.49554 * 15 14 2 19 19 C 1.53007 * 117.49689 * 248.74547 * 18 15 14 20 20 C 1.53005 * 117.49825 * 180.08879 * 18 15 14 21 21 H 1.09004 * 109.46989 * 302.03009 * 1 2 3 22 22 H 1.08998 * 109.46939 * 62.02623 * 1 2 3 23 23 H 1.08994 * 109.47121 * 182.02742 * 1 2 3 24 24 H 1.08999 * 109.47043 * 53.94763 * 3 2 1 25 25 H 1.09001 * 109.46838 * 173.95375 * 3 2 1 26 26 H 1.09001 * 109.47383 * 300.00184 * 4 3 2 27 27 H 1.09001 * 109.47181 * 60.00586 * 4 3 2 28 28 H 1.08991 * 109.47351 * 300.00384 * 5 4 3 29 29 H 1.09001 * 109.46577 * 60.00301 * 5 4 3 30 30 H 0.97003 * 119.99527 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.47270 * 43.99981 * 14 2 1 32 32 H 1.09003 * 109.47181 * 284.00049 * 14 2 1 33 33 H 0.96698 * 113.99934 * 300.00631 * 17 15 14 34 34 H 1.08994 * 115.55391 * 34.41776 * 18 15 14 35 35 H 1.08999 * 117.49786 * 0.02562 * 19 18 15 36 36 H 1.09003 * 117.49597 * 145.02561 * 19 18 15 37 37 H 1.08996 * 117.49765 * 214.98077 * 20 18 15 38 38 H 1.09003 * 117.49535 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 -1.3183 5 6 2.1794 3.4859 -1.3182 6 6 1.8215 4.1613 -2.6169 7 1 1.2591 3.6253 -3.3672 8 6 2.2119 5.4634 -2.8473 9 7 2.8971 6.1159 -1.9338 10 14 1.7676 6.3009 -4.4569 11 1 0.4554 6.9815 -4.3151 12 1 2.8101 7.3018 -4.7983 13 1 1.6842 5.2850 -5.5368 14 6 1.9954 -0.7659 1.1377 15 6 3.4728 -1.0842 0.8984 16 1 4.0282 -0.1553 0.7694 17 8 3.6031 -1.8845 -0.2782 18 6 4.0307 -1.8494 2.1001 19 6 5.0528 -1.1303 2.9829 20 6 5.5038 -2.2603 2.0540 21 1 -0.3633 0.5451 0.8713 22 1 -0.3633 0.4820 -0.9076 23 1 -0.3633 -1.0270 0.0364 24 1 1.5611 1.9274 0.8308 25 1 3.0798 1.3443 0.1082 26 1 2.0659 1.5013 -2.1492 27 1 0.5473 2.0845 -1.4266 28 1 1.7447 4.0416 -0.4874 29 1 3.2636 3.4592 -1.2097 30 1 3.1720 7.0318 -2.0961 31 1 1.4354 -1.6955 1.2401 32 1 1.8934 -0.1780 2.0499 33 1 3.1329 -2.7283 -0.2340 34 1 3.3335 -2.5297 2.5892 35 1 5.3274 -0.1120 2.7077 36 1 5.0283 -1.3379 4.0527 37 1 5.7757 -3.2108 2.5130 38 1 6.0753 -1.9858 1.1673 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610572828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:30 Heat of formation + Delta-G solvation = -60.725370 kcal Electronic energy + Delta-G solvation = -15834.546503 eV Core-core repulsion = 13290.344047 eV Total energy + Delta-G solvation = -2544.202456 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.97972 -38.15169 -36.24921 -35.55916 -33.29978 -30.36393 -28.80046 -26.42598 -24.91705 -23.23742 -22.52646 -21.80042 -21.41173 -18.49645 -17.55336 -16.95452 -16.69038 -16.53109 -16.26237 -15.38588 -15.09827 -15.03157 -14.37383 -14.28512 -13.65846 -13.59164 -13.13663 -12.79875 -12.68515 -12.58169 -12.48320 -12.39630 -12.23158 -11.89050 -11.48074 -11.40234 -11.30322 -11.11935 -11.08767 -10.70793 -10.55775 -9.20995 -8.20789 -6.32083 1.39341 1.41346 1.52836 2.40712 2.74329 2.97538 3.12145 3.61369 3.74024 3.96219 4.02897 4.14433 4.19151 4.27419 4.36853 4.42342 4.59926 4.65857 4.69023 4.76885 4.79081 4.90387 4.98265 5.02312 5.04800 5.08660 5.24267 5.24898 5.31408 5.51002 5.72400 5.84329 6.07013 6.19824 6.26983 6.84161 7.01847 7.37149 8.91366 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034734 B = 0.004856 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.938586 B = 5764.836628 C = 6141.881261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.544 5.544 3 C 0.068 3.932 4 C -0.088 4.088 5 C 0.026 3.974 6 C -0.544 4.544 7 H 0.058 0.942 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.967 3.033 11 H -0.270 1.270 12 H -0.280 1.280 13 H -0.264 1.264 14 C 0.030 3.970 15 C 0.143 3.857 16 H 0.068 0.932 17 O -0.563 6.563 18 C -0.188 4.188 19 C -0.179 4.179 20 C -0.165 4.165 21 H 0.024 0.976 22 H 0.060 0.940 23 H 0.088 0.912 24 H 0.024 0.976 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.052 0.948 28 H -0.009 1.009 29 H -0.012 1.012 30 H 0.264 0.736 31 H 0.100 0.900 32 H 0.042 0.958 33 H 0.384 0.616 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.790 -17.960 9.629 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.060 4.060 4 C -0.126 4.126 5 C -0.011 4.011 6 C -0.582 4.582 7 H 0.076 0.924 8 C -0.198 4.198 9 N -0.574 5.574 10 Si 0.791 3.209 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.188 1.188 14 C -0.098 4.098 15 C 0.083 3.917 16 H 0.086 0.914 17 O -0.369 6.369 18 C -0.207 4.207 19 C -0.217 4.217 20 C -0.202 4.202 21 H 0.042 0.958 22 H 0.079 0.921 23 H 0.107 0.893 24 H 0.042 0.958 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.009 0.991 29 H 0.007 0.993 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.061 0.939 33 H 0.232 0.768 34 H 0.144 0.856 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.205 -17.534 9.040 19.728 hybrid contribution -0.564 0.949 0.285 1.140 sum -0.769 -16.585 9.325 19.042 Atomic orbital electron populations 1.22448 0.86598 1.02615 1.00694 1.61921 1.08470 1.13100 1.43296 1.22041 0.99214 0.87982 0.96791 1.21373 0.99772 0.95214 0.96257 1.18969 0.94492 0.92186 0.95502 1.21679 1.35082 0.98392 1.02999 0.92350 1.26003 0.94842 0.98229 1.00768 1.70102 1.39272 1.11763 1.36307 0.85419 0.78121 0.78191 0.79155 1.19545 1.20573 1.18828 1.22844 0.96395 0.99103 0.91501 1.21350 0.94027 0.92677 0.83625 0.91414 1.86620 1.76325 1.34929 1.39012 1.23009 0.93565 1.04320 0.99830 1.23045 1.03187 0.97308 0.98113 1.22883 0.95908 0.99842 1.01550 0.95766 0.92094 0.89347 0.95764 0.92221 0.93495 0.92962 0.99081 0.99319 0.92728 0.88169 0.93946 0.76787 0.85618 0.89894 0.86981 0.86968 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.27 127.69 1.18 1.81 16 2 N -0.54 -16.35 4.61 -922.42 -4.25 -20.60 16 3 C 0.07 2.52 4.81 86.30 0.41 2.93 16 4 C -0.09 -3.95 5.08 30.59 0.16 -3.79 16 5 C 0.03 1.46 4.97 29.85 0.15 1.60 16 6 C -0.54 -32.37 9.11 25.60 0.23 -32.14 16 7 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 8 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 9 N -0.93 -58.42 13.29 21.45 0.28 -58.13 16 10 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 14 C 0.03 0.68 4.61 86.31 0.40 1.08 16 15 C 0.14 3.42 3.18 30.60 0.10 3.52 16 16 H 0.07 2.04 6.31 -2.39 -0.02 2.03 16 17 O -0.56 -14.52 13.14 -148.98 -1.96 -16.48 16 18 C -0.19 -3.35 5.36 -10.79 -0.06 -3.41 16 19 C -0.18 -3.21 10.18 30.62 0.31 -2.89 16 20 C -0.16 -2.90 10.16 30.62 0.31 -2.59 16 21 H 0.02 0.61 8.13 -2.38 -0.02 0.59 16 22 H 0.06 1.75 6.57 -2.39 -0.02 1.74 16 23 H 0.09 1.77 7.95 -2.39 -0.02 1.75 16 24 H 0.02 0.90 8.11 -2.39 -0.02 0.89 16 25 H 0.06 2.31 6.38 -2.39 -0.02 2.29 16 26 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.05 2.25 6.60 -2.39 -0.02 2.24 16 28 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 30 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.10 1.74 7.87 -2.39 -0.02 1.72 16 32 H 0.04 0.98 8.05 -2.39 -0.02 0.96 16 33 H 0.38 6.62 9.05 -74.06 -0.67 5.95 16 34 H 0.13 1.70 8.11 -2.39 -0.02 1.68 16 35 H 0.08 1.72 8.05 -2.39 -0.02 1.70 16 36 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -68.94 310.17 0.10 -68.83 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.35 Total: 12.33 kcal Atomic # 6 Polarization: -37.12 SS G_CDS: 3.66 Total: -33.46 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -3.97 Total: -78.74 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -1.96 Total: -16.48 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -68.94 0.10 -68.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610572828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.107 kcal (2) G-P(sol) polarization free energy of solvation -68.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds