Wall clock time and date at job start Thu Apr 9 2020 11:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.46824 * 2 1 4 4 C 1.46891 * 111.00402 * 297.34433 * 3 2 1 5 5 C 1.50709 * 109.47081 * 292.73156 * 4 3 2 6 6 H 1.07996 * 119.99764 * 355.01649 * 5 4 3 7 7 C 1.37873 * 120.00107 * 175.01793 * 5 4 3 8 8 N 1.31513 * 120.00149 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99886 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47246 * 90.00223 * 9 7 5 11 11 H 1.48498 * 109.47097 * 209.99910 * 9 7 5 12 12 H 1.48496 * 109.47433 * 329.99981 * 9 7 5 13 13 C 1.46905 * 111.00106 * 61.30279 * 3 2 1 14 14 C 1.52995 * 109.47479 * 66.03843 * 13 3 2 15 15 H 1.08992 * 109.57520 * 304.84728 * 14 13 3 16 16 C 1.53177 * 109.52227 * 184.68423 * 14 13 3 17 17 C 1.53182 * 109.04543 * 183.11935 * 16 14 13 18 18 C 1.53090 * 109.15770 * 56.96895 * 17 16 14 19 19 O 1.42899 * 109.42938 * 302.40629 * 18 17 16 20 20 C 1.42904 * 114.09618 * 61.15198 * 19 18 17 21 21 H 1.09001 * 109.47377 * 299.43969 * 1 2 3 22 22 H 1.09000 * 109.47255 * 59.44619 * 1 2 3 23 23 H 1.09004 * 109.47033 * 179.43986 * 1 2 3 24 24 H 1.08999 * 109.47196 * 240.00194 * 2 1 3 25 25 H 1.08997 * 109.46944 * 119.99491 * 2 1 3 26 26 H 1.09001 * 109.47094 * 52.72710 * 4 3 2 27 27 H 1.08996 * 109.47488 * 172.73006 * 4 3 2 28 28 H 0.96999 * 120.00054 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46296 * 306.03988 * 13 3 2 30 30 H 1.09002 * 109.46875 * 186.04670 * 13 3 2 31 31 H 1.08995 * 109.55037 * 302.98708 * 16 14 13 32 32 H 1.09008 * 109.53918 * 63.16310 * 16 14 13 33 33 H 1.08997 * 109.51475 * 297.07211 * 17 16 14 34 34 H 1.09000 * 109.53295 * 176.87661 * 17 16 14 35 35 H 1.09004 * 109.48288 * 182.41612 * 18 17 16 36 36 H 1.09004 * 109.48520 * 62.39469 * 18 17 16 37 37 H 1.08995 * 109.48190 * 58.82997 * 20 19 18 38 38 H 1.09002 * 109.48336 * 178.86813 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6012 2.0913 -1.2181 5 6 2.2996 1.4918 -2.4114 6 1 3.0452 0.7233 -2.2709 7 6 1.9867 1.9244 -3.6826 8 7 1.0791 2.8607 -3.8537 9 14 2.8528 1.1818 -5.1616 10 1 2.0881 0.0033 -5.6429 11 1 2.9371 2.1935 -6.2454 12 1 4.2218 0.7582 -4.7724 13 6 1.5742 2.1009 1.2030 14 6 2.2323 1.4821 2.4378 15 1 2.0197 0.4135 2.4681 16 6 1.6802 2.1499 3.7009 17 6 2.4020 1.5779 4.9250 18 6 3.9093 1.7928 4.7653 19 8 4.3524 1.1734 3.5561 20 6 3.7462 1.7010 2.3744 21 1 -0.3634 0.5051 0.8950 22 1 -0.3634 0.5224 -0.8850 23 1 -0.3633 -1.0277 -0.0100 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 0.5226 1.9945 -1.3419 27 1 1.8642 3.1458 -1.1351 28 1 0.8586 3.1648 -4.7480 29 1 0.4905 2.0233 1.2915 30 1 1.8583 3.1505 1.1273 31 1 1.8486 3.2255 3.6482 32 1 0.6113 1.9517 3.7807 33 1 2.1927 0.5112 5.0056 34 1 2.0547 2.0872 5.8239 35 1 4.4316 1.3495 5.6133 36 1 4.1221 2.8611 4.7256 37 1 3.9566 2.7681 2.3033 38 1 4.1508 1.1914 1.4998 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610864852.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:35 Heat of formation + Delta-G solvation = -77.871271 kcal Electronic energy + Delta-G solvation = -16611.434766 eV Core-core repulsion = 14066.488808 eV Total energy + Delta-G solvation = -2544.945958 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.53846 -38.69490 -35.14912 -34.39458 -32.52538 -30.98541 -28.81182 -26.31069 -25.87251 -24.99183 -23.26235 -21.19863 -20.45192 -18.35602 -17.31400 -16.98033 -16.69089 -16.46283 -16.06796 -15.47116 -15.37483 -14.72065 -14.32531 -14.12914 -13.70981 -13.46901 -13.21986 -13.11364 -12.80595 -12.62640 -12.61241 -12.39962 -12.12661 -11.99915 -11.86596 -11.55853 -11.34634 -11.15572 -11.03134 -10.58810 -10.31844 -8.87388 -8.17677 -6.26760 1.41194 1.42159 1.53819 2.41547 3.04093 3.14939 3.32777 3.82975 3.94876 4.04162 4.08228 4.26275 4.34290 4.43178 4.50282 4.58832 4.64237 4.69769 4.75617 4.82478 4.92973 4.98048 5.01027 5.05701 5.12697 5.14603 5.24341 5.36067 5.38891 5.45401 5.53352 5.70210 6.10997 6.34714 6.41001 6.70483 6.90635 7.42737 8.92772 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.040942 B = 0.006156 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.723716 B = 4547.356255 C = 4772.319606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.060 3.940 3 N -0.541 5.541 4 C 0.204 3.796 5 C -0.517 4.517 6 H 0.060 0.940 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.965 3.035 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.060 3.940 14 C -0.105 4.105 15 H 0.075 0.925 16 C -0.116 4.116 17 C -0.147 4.147 18 C 0.050 3.950 19 O -0.406 6.406 20 C 0.079 3.921 21 H 0.059 0.941 22 H 0.031 0.969 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.080 0.920 26 H -0.020 1.020 27 H -0.005 1.005 28 H 0.263 0.737 29 H 0.033 0.967 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 -2.971 16.218 16.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.068 4.068 3 N -0.264 5.264 4 C 0.077 3.923 5 C -0.556 4.556 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.576 5.576 9 Si 0.790 3.210 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.191 1.191 13 C -0.069 4.069 14 C -0.124 4.124 15 H 0.093 0.907 16 C -0.154 4.154 17 C -0.184 4.184 18 C -0.026 4.026 19 O -0.325 6.325 20 C 0.003 3.997 21 H 0.077 0.923 22 H 0.051 0.949 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.098 0.902 26 H -0.003 1.003 27 H 0.013 0.987 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.789 -3.021 16.086 16.465 hybrid contribution -0.963 0.283 -1.274 1.622 sum 0.826 -2.738 14.812 15.085 Atomic orbital electron populations 1.22263 0.98535 1.02136 1.00787 1.21998 0.92844 0.90459 1.01493 1.62221 1.59495 1.02665 1.02022 1.19414 0.93139 0.92437 0.87282 1.21455 1.21605 1.21224 0.91284 0.92213 1.25848 0.95998 0.95601 1.02090 1.70081 1.33777 1.30697 1.23063 0.85450 0.79120 0.78041 0.78426 1.19907 1.20873 1.19067 1.22093 0.97171 0.97519 0.90077 1.21680 0.95898 1.00804 0.94054 0.90700 1.21631 1.00383 1.00057 0.93360 1.22139 0.95588 1.02166 0.98552 1.22801 0.94919 0.97852 0.87063 1.87902 1.66411 1.62972 1.15216 1.22426 0.92182 0.98048 0.87060 0.92258 0.94950 0.91042 0.92385 0.90153 1.00262 0.98679 0.92841 0.94859 0.92526 0.91616 0.90888 0.91346 0.88709 0.87439 0.92881 0.93794 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.34 9.26 71.98 0.67 -5.67 16 2 C 0.06 2.29 5.68 86.30 0.49 2.78 16 3 N -0.54 -22.97 4.20 -900.80 -3.78 -26.75 16 4 C 0.20 10.79 4.54 85.56 0.39 11.18 16 5 C -0.52 -29.43 8.39 25.60 0.21 -29.22 16 6 H 0.06 3.36 7.39 -2.91 -0.02 3.34 16 7 C 0.00 0.13 5.46 84.65 0.46 0.59 16 8 N -0.94 -56.58 13.29 21.45 0.28 -56.29 16 9 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 C 0.06 2.09 4.13 86.30 0.36 2.44 16 14 C -0.11 -2.99 2.30 -10.70 -0.02 -3.01 16 15 H 0.07 2.18 6.32 -2.39 -0.02 2.16 16 16 C -0.12 -2.55 5.31 30.71 0.16 -2.39 16 17 C -0.15 -2.66 6.14 30.69 0.19 -2.47 16 18 C 0.05 1.01 6.84 72.01 0.49 1.51 16 19 O -0.41 -11.63 10.77 -148.98 -1.60 -13.23 16 20 C 0.08 2.42 5.98 72.02 0.43 2.85 16 21 H 0.06 1.90 6.33 -2.39 -0.02 1.89 16 22 H 0.03 1.37 6.29 -2.39 -0.02 1.35 16 23 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.06 2.46 6.98 -2.39 -0.02 2.44 16 25 H 0.08 2.64 6.32 -2.39 -0.02 2.63 16 26 H -0.02 -1.15 6.02 -2.39 -0.01 -1.17 16 27 H 0.00 -0.28 7.91 -2.39 -0.02 -0.30 16 28 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 29 H 0.03 1.15 6.05 -2.39 -0.01 1.14 16 30 H 0.06 2.06 7.92 -2.39 -0.02 2.04 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 2.99 7.83 -2.39 -0.02 2.97 16 Total: -1.00 -63.43 291.94 1.77 -61.67 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.01 Total: 9.22 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 3.83 Total: -21.40 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -3.50 Total: -83.05 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -1.60 Total: -13.23 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.43 1.77 -61.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610864852.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.204 kcal (2) G-P(sol) polarization free energy of solvation -63.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds