Wall clock time and date at job start Thu Apr 9 2020 11:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34827 * 125.89767 * 2 1 4 4 C 1.36426 * 107.61417 * 180.02562 * 3 2 1 5 5 C 1.48491 * 126.22253 * 179.97438 * 4 3 2 6 6 C 1.39699 * 119.99217 * 359.97187 * 5 4 3 7 7 C 1.38410 * 120.37861 * 180.02562 * 6 5 4 8 8 C 1.37715 * 120.37381 * 359.97438 * 7 6 5 9 9 C 1.40758 * 119.97899 * 0.02562 * 8 7 6 10 10 C 1.41418 * 120.18626 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00329 * 204.50362 * 10 9 8 12 12 C 1.39934 * 119.99960 * 24.50103 * 10 9 8 13 13 N 1.30829 * 120.00076 * 17.89681 * 12 10 9 14 14 Si 1.86806 * 120.00053 * 197.89166 * 12 10 9 15 15 H 1.48500 * 109.46850 * 59.99962 * 14 12 10 16 16 H 1.48495 * 109.46987 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47077 * 300.00349 * 14 12 10 18 18 C 1.38682 * 119.99620 * 180.02562 * 5 4 3 19 19 C 1.40840 * 107.55684 * 0.24037 * 4 3 2 20 20 N 1.30675 * 108.09847 * 359.59126 * 19 4 3 21 21 H 1.08994 * 109.47553 * 89.99388 * 1 2 3 22 22 H 1.09001 * 109.47109 * 210.00319 * 1 2 3 23 23 H 1.09009 * 109.46873 * 329.99535 * 1 2 3 24 24 H 1.08002 * 126.19096 * 0.02772 * 3 2 1 25 25 H 1.07992 * 119.81397 * 0.02562 * 6 5 4 26 26 H 1.07993 * 119.80953 * 180.02562 * 7 6 5 27 27 H 1.07995 * 120.01016 * 180.02562 * 8 7 6 28 28 H 0.96999 * 120.00324 * 179.97438 * 13 12 10 29 29 H 1.07998 * 120.18330 * 359.71860 * 18 5 4 30 30 H 1.07992 * 125.95248 * 179.72096 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.0922 0.0000 4 6 3.5509 0.6642 -0.0006 5 6 4.7599 1.5264 -0.0013 6 6 4.6259 2.9169 -0.0021 7 6 5.7474 3.7281 -0.0033 8 6 7.0080 3.1736 -0.0033 9 6 7.1608 1.7743 -0.0025 10 6 8.4532 1.2002 -0.0020 11 1 8.6013 0.2030 -0.3893 12 6 9.5402 1.9242 0.5005 13 7 9.3354 2.9583 1.2752 14 14 11.2837 1.4140 0.0651 15 1 11.4634 1.4728 -1.4078 16 1 12.2470 2.3356 0.7191 17 1 11.5265 0.0274 0.5383 18 6 6.0217 0.9510 -0.0024 19 6 3.5330 -0.7441 -0.0066 20 7 2.2859 -1.1343 -0.0006 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5140 24 1 1.9234 2.1199 0.0004 25 1 3.6418 3.3615 -0.0017 26 1 5.6332 4.8020 -0.0035 27 1 7.8789 3.8121 -0.0038 28 1 10.0889 3.4599 1.6239 29 1 6.1285 -0.1236 0.0019 30 1 4.3991 -1.3891 -0.0127 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219034001.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:49 Heat of formation + Delta-G solvation = 89.595915 kcal Electronic energy + Delta-G solvation = -14497.330808 eV Core-core repulsion = 12065.696686 eV Total energy + Delta-G solvation = -2431.634122 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71754 -37.29859 -33.83990 -32.93797 -30.79761 -29.79292 -28.26667 -25.94092 -25.18474 -21.71237 -21.33768 -19.64446 -19.52399 -17.34528 -16.22503 -15.24904 -15.18402 -14.58221 -14.23039 -13.60200 -13.26475 -12.89542 -12.67257 -12.46443 -12.30063 -11.86890 -11.58228 -11.12100 -11.04087 -10.66402 -10.45884 -10.35497 -9.62287 -9.33332 -9.15855 -9.08438 -8.57542 -7.41975 -6.76610 -6.66729 -4.30672 2.08858 2.66304 2.80349 2.87911 3.09950 3.12926 3.25310 3.82933 3.97871 4.70372 4.73935 5.14895 5.18901 5.35924 5.42628 5.79243 5.94874 6.03394 6.31796 6.42376 6.49102 6.93009 7.01524 7.12220 7.22947 7.38681 7.43743 7.65525 7.92797 8.03126 8.08638 8.16563 8.35610 8.68524 8.95170 9.02199 10.24641 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.050774 B = 0.005869 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.328802 B = 4769.748817 C = 5236.790832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.386 5.386 3 C 0.044 3.956 4 C -0.163 4.163 5 C 0.007 3.993 6 C -0.232 4.232 7 C -0.105 4.105 8 C -0.165 4.165 9 C 0.111 3.889 10 C -0.466 4.466 11 H 0.077 0.923 12 C 0.077 3.923 13 N -0.796 5.796 14 Si 0.906 3.094 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.210 4.210 19 C 0.059 3.941 20 N -0.310 5.310 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.172 0.828 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.280 0.720 29 H 0.094 0.906 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.835 -1.476 -1.609 10.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.169 5.169 3 C -0.100 4.100 4 C -0.173 4.173 5 C 0.006 3.994 6 C -0.252 4.252 7 C -0.123 4.123 8 C -0.184 4.184 9 C 0.109 3.891 10 C -0.495 4.495 11 H 0.095 0.905 12 C -0.140 4.140 13 N -0.422 5.422 14 Si 0.731 3.269 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.191 1.191 18 C -0.230 4.230 19 C -0.127 4.127 20 N -0.131 5.131 21 H 0.087 0.913 22 H 0.103 0.897 23 H 0.101 0.899 24 H 0.189 0.811 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.135 0.865 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.679 -2.303 -1.452 11.021 hybrid contribution 1.309 0.633 -0.053 1.455 sum -9.370 -1.670 -1.505 9.636 Atomic orbital electron populations 1.21725 0.74970 1.03973 1.02818 1.48241 1.06169 1.03984 1.58511 1.22458 0.90934 0.92848 1.03778 1.19304 0.92830 0.92879 1.12335 1.17653 0.89885 0.91540 1.00341 1.20265 0.96365 0.92289 1.16291 1.20585 0.93435 0.97092 1.01210 1.21356 0.95582 0.95528 1.05940 1.17517 0.92228 0.91653 0.87734 1.19522 0.91692 1.01807 1.36511 0.90504 1.25876 1.01499 0.94065 0.92575 1.69824 1.33789 1.16029 1.22524 0.86403 0.81178 0.79401 0.79925 1.18871 1.20433 1.19053 1.20930 0.91260 0.97661 1.13179 1.24004 0.94618 0.95005 0.99062 1.77124 1.02021 1.08326 1.25648 0.91278 0.89740 0.89879 0.81136 0.89745 0.89442 0.86523 0.90935 0.88825 0.79935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.03 11.46 59.85 0.69 1.72 16 2 N -0.39 -5.93 4.00 -67.90 -0.27 -6.20 16 3 C 0.04 0.73 10.87 -16.89 -0.18 0.55 16 4 C -0.16 -3.20 6.04 -105.34 -0.64 -3.84 16 5 C 0.01 0.16 5.87 -104.96 -0.62 -0.45 16 6 C -0.23 -5.18 9.57 -38.97 -0.37 -5.55 16 7 C -0.10 -2.46 10.01 -39.71 -0.40 -2.86 16 8 C -0.16 -4.30 8.69 -38.82 -0.34 -4.64 16 9 C 0.11 2.97 5.57 -106.87 -0.60 2.38 16 10 C -0.47 -12.40 9.05 -37.74 -0.34 -12.74 16 11 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 12 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 13 N -0.80 -20.71 10.96 55.55 0.61 -20.10 16 14 Si 0.91 18.76 29.60 -169.99 -5.03 13.73 16 15 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 16 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 18 C -0.21 -5.18 9.32 -38.55 -0.36 -5.54 16 19 C 0.06 1.10 11.41 -17.06 -0.19 0.91 16 20 N -0.31 -5.53 12.54 30.80 0.39 -5.14 16 21 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 24 H 0.17 2.32 7.27 -52.49 -0.38 1.94 16 25 H 0.08 1.62 6.99 -52.49 -0.37 1.26 16 26 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.12 3.14 6.15 -52.49 -0.32 2.81 16 28 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 29 H 0.09 2.16 7.03 -52.49 -0.37 1.79 16 30 H 0.18 3.06 7.34 -52.49 -0.39 2.68 16 LS Contribution 264.88 15.07 3.99 3.99 Total: -1.00 -30.04 264.88 -6.82 -36.86 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -3.07 Total: 5.07 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: -3.44 Total: -28.21 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 0.72 Total: -31.44 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.04 -6.82 -36.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219034001.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.456 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds