Wall clock time and date at job start Thu Apr 9 2020 11:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34827 * 125.89767 * 2 1 4 4 C 1.36426 * 107.61417 * 180.02562 * 3 2 1 5 5 C 1.48491 * 126.22253 * 179.97438 * 4 3 2 6 6 C 1.39699 * 119.99217 * 359.97187 * 5 4 3 7 7 C 1.38410 * 120.37861 * 180.02562 * 6 5 4 8 8 C 1.37715 * 120.37381 * 359.97438 * 7 6 5 9 9 C 1.40758 * 119.97899 * 0.02562 * 8 7 6 10 10 C 1.41418 * 120.18626 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00329 * 204.50362 * 10 9 8 12 12 C 1.39934 * 119.99960 * 24.50103 * 10 9 8 13 13 N 1.30829 * 120.00076 * 17.89681 * 12 10 9 14 14 Si 1.86806 * 120.00053 * 197.89166 * 12 10 9 15 15 H 1.48500 * 109.46850 * 59.99962 * 14 12 10 16 16 H 1.48495 * 109.46987 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47077 * 300.00349 * 14 12 10 18 18 C 1.38682 * 119.99620 * 180.02562 * 5 4 3 19 19 C 1.40840 * 107.55684 * 0.24037 * 4 3 2 20 20 N 1.30675 * 108.09847 * 359.59126 * 19 4 3 21 21 H 1.08994 * 109.47553 * 89.99388 * 1 2 3 22 22 H 1.09001 * 109.47109 * 210.00319 * 1 2 3 23 23 H 1.09009 * 109.46873 * 329.99535 * 1 2 3 24 24 H 1.08002 * 126.19096 * 0.02772 * 3 2 1 25 25 H 1.07992 * 119.81397 * 0.02562 * 6 5 4 26 26 H 1.07993 * 119.80953 * 180.02562 * 7 6 5 27 27 H 1.07995 * 120.01016 * 180.02562 * 8 7 6 28 28 H 0.96999 * 120.00324 * 179.97438 * 13 12 10 29 29 H 1.07998 * 120.18330 * 359.71860 * 18 5 4 30 30 H 1.07992 * 125.95248 * 179.72096 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.0922 0.0000 4 6 3.5509 0.6642 -0.0006 5 6 4.7599 1.5264 -0.0013 6 6 4.6259 2.9169 -0.0021 7 6 5.7474 3.7281 -0.0033 8 6 7.0080 3.1736 -0.0033 9 6 7.1608 1.7743 -0.0025 10 6 8.4532 1.2002 -0.0020 11 1 8.6013 0.2030 -0.3893 12 6 9.5402 1.9242 0.5005 13 7 9.3354 2.9583 1.2752 14 14 11.2837 1.4140 0.0651 15 1 11.4634 1.4728 -1.4078 16 1 12.2470 2.3356 0.7191 17 1 11.5265 0.0274 0.5383 18 6 6.0217 0.9510 -0.0024 19 6 3.5330 -0.7441 -0.0066 20 7 2.2859 -1.1343 -0.0006 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5140 24 1 1.9234 2.1199 0.0004 25 1 3.6418 3.3615 -0.0017 26 1 5.6332 4.8020 -0.0035 27 1 7.8789 3.8121 -0.0038 28 1 10.0889 3.4599 1.6239 29 1 6.1285 -0.1236 0.0019 30 1 4.3991 -1.3891 -0.0127 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219034001.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:49 Heat of formation + Delta-G solvation = 72.553463 kcal Electronic energy + Delta-G solvation = -14498.069824 eV Core-core repulsion = 12065.696686 eV Total energy + Delta-G solvation = -2432.373138 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.04721 -39.11515 -35.63870 -34.20226 -32.39231 -31.64937 -29.69525 -27.15612 -27.08371 -23.34057 -22.94529 -21.14025 -21.11710 -19.03915 -17.73768 -17.01851 -16.30962 -16.29573 -15.67682 -15.22090 -14.90626 -14.32642 -13.95100 -13.77018 -13.73228 -13.34826 -13.20366 -12.86482 -12.71091 -12.46150 -12.12194 -11.86028 -11.38948 -11.14733 -11.00676 -10.36808 -10.15786 -9.32175 -8.59762 -8.37817 -6.29091 0.64602 1.06851 1.12425 1.40022 1.50989 1.55671 1.71243 2.17955 2.25103 2.87807 3.65695 3.88162 4.00717 4.33208 4.40388 4.48372 4.59635 4.71433 4.77030 4.82982 4.89714 5.13134 5.17769 5.34526 5.58595 5.61991 5.81745 6.09114 6.15104 6.16793 6.26975 6.46737 6.72756 6.77274 7.01310 7.10692 8.39137 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.050774 B = 0.005869 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.328802 B = 4769.748817 C = 5236.790832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.376 5.376 3 C 0.072 3.928 4 C -0.209 4.209 5 C 0.014 3.986 6 C -0.231 4.231 7 C -0.106 4.106 8 C -0.197 4.197 9 C 0.081 3.919 10 C -0.505 4.505 11 H 0.073 0.927 12 C 0.037 3.963 13 N -0.828 5.828 14 Si 0.980 3.020 15 H -0.261 1.261 16 H -0.267 1.267 17 H -0.261 1.261 18 C -0.234 4.234 19 C 0.048 3.952 20 N -0.327 5.327 21 H 0.089 0.911 22 H 0.093 0.907 23 H 0.116 0.884 24 H 0.208 0.792 25 H 0.124 0.876 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.287 0.713 29 H 0.094 0.906 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.948 -1.080 -1.773 12.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.158 5.158 3 C -0.076 4.076 4 C -0.220 4.220 5 C 0.013 3.987 6 C -0.250 4.250 7 C -0.124 4.124 8 C -0.217 4.217 9 C 0.079 3.921 10 C -0.535 4.535 11 H 0.091 0.909 12 C -0.178 4.178 13 N -0.454 5.454 14 Si 0.801 3.199 15 H -0.186 1.186 16 H -0.192 1.192 17 H -0.185 1.185 18 C -0.254 4.254 19 C -0.137 4.137 20 N -0.149 5.149 21 H 0.107 0.893 22 H 0.111 0.889 23 H 0.135 0.865 24 H 0.224 0.776 25 H 0.142 0.858 26 H 0.131 0.869 27 H 0.117 0.883 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -12.837 -1.928 -1.616 13.081 hybrid contribution 1.657 0.502 0.001 1.732 sum -11.180 -1.426 -1.614 11.385 Atomic orbital electron populations 1.22254 0.71419 1.06153 1.04825 1.48743 1.08078 1.02978 1.55989 1.22905 0.89841 0.94490 1.00329 1.19239 0.93162 0.93048 1.16560 1.17940 0.90363 0.92465 0.97941 1.20687 0.97692 0.92025 1.14642 1.20907 0.92846 0.98727 0.99966 1.21317 0.96329 0.95267 1.08771 1.17877 0.93160 0.92501 0.88566 1.19778 0.92958 1.02349 1.38421 0.90906 1.26709 1.05421 0.93850 0.91797 1.69884 1.35290 1.17058 1.23203 0.85294 0.75774 0.79257 0.79601 1.18577 1.19151 1.18492 1.21088 0.92023 0.97766 1.14528 1.24089 0.95244 0.95012 0.99396 1.77090 1.01891 1.09676 1.26237 0.89294 0.88867 0.86545 0.77563 0.85810 0.86864 0.88316 0.90280 0.88761 0.79886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 11.46 127.77 1.46 2.82 16 2 N -0.38 -10.20 4.00 -368.72 -1.48 -11.67 16 3 C 0.07 2.09 10.87 83.81 0.91 3.00 16 4 C -0.21 -7.91 6.04 -20.33 -0.12 -8.04 16 5 C 0.01 0.64 5.87 -20.08 -0.12 0.52 16 6 C -0.23 -9.86 9.57 22.66 0.22 -9.65 16 7 C -0.11 -4.94 10.01 22.19 0.22 -4.72 16 8 C -0.20 -10.66 8.69 22.76 0.20 -10.46 16 9 C 0.08 4.54 5.57 -21.32 -0.12 4.42 16 10 C -0.51 -28.24 9.05 23.46 0.21 -28.02 16 11 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 12 C 0.04 1.90 5.14 85.25 0.44 2.34 16 13 N -0.83 -44.53 10.96 21.82 0.24 -44.29 16 14 Si 0.98 39.31 29.60 68.60 2.03 41.34 16 15 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 16 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 17 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 18 C -0.23 -11.95 9.32 22.94 0.21 -11.74 16 19 C 0.05 1.75 11.41 85.50 0.98 2.73 16 20 N -0.33 -11.09 12.54 -56.47 -0.71 -11.79 16 21 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.21 4.41 7.27 -2.91 -0.02 4.39 16 25 H 0.12 4.23 6.99 -2.91 -0.02 4.21 16 26 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 27 H 0.10 5.57 6.15 -2.91 -0.02 5.55 16 28 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 29 H 0.09 4.60 7.03 -2.91 -0.02 4.58 16 30 H 0.18 6.35 7.34 -2.91 -0.02 6.33 16 Total: -1.00 -67.40 264.88 5.72 -61.68 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 1.15 Total: 21.54 kcal Atomic # 6 Polarization: -61.29 SS G_CDS: 4.49 Total: -56.80 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: -1.94 Total: -67.76 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -67.40 5.72 -61.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219034001.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.235 kcal (2) G-P(sol) polarization free energy of solvation -67.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds