Wall clock time and date at job start Thu Apr 9 2020 11:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47201 * 2 1 4 4 C 1.50702 * 109.47218 * 120.00362 * 2 1 3 5 5 N 1.29946 * 126.28406 * 299.97165 * 4 2 1 6 6 O 1.21301 * 110.24604 * 179.97438 * 5 4 2 7 7 C 1.33636 * 109.81535 * 0.02562 * 6 5 4 8 8 C 1.50698 * 126.55292 * 179.97438 * 7 6 5 9 9 S 1.80998 * 109.47116 * 270.02365 * 8 7 6 10 10 C 1.76199 * 100.00013 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00250 * 0.02562 * 10 9 8 12 12 C 1.38798 * 120.00102 * 179.72368 * 10 9 8 13 13 N 1.31634 * 120.00298 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99861 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47644 * 89.99884 * 14 12 10 16 16 H 1.48506 * 109.47143 * 209.99830 * 14 12 10 17 17 H 1.48501 * 109.47120 * 329.99545 * 14 12 10 18 18 N 1.31133 * 106.89915 * 0.22073 * 7 6 5 19 19 H 1.08997 * 109.47411 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.46915 * 299.99986 * 1 2 3 21 21 H 1.09004 * 109.47515 * 59.99517 * 1 2 3 22 22 H 1.09007 * 109.46848 * 240.00126 * 2 1 3 23 23 H 1.09004 * 109.46998 * 180.02562 * 3 2 1 24 24 H 1.09009 * 109.47057 * 300.00225 * 3 2 1 25 25 H 1.08998 * 109.47175 * 60.00174 * 3 2 1 26 26 H 1.09001 * 109.47434 * 150.02127 * 8 7 6 27 27 H 1.08999 * 109.47072 * 30.02606 * 8 7 6 28 28 H 0.96995 * 120.00138 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7953 -0.3745 2.4631 6 8 2.3414 -1.1479 3.2214 7 6 2.9989 -2.0786 2.5234 8 6 3.8056 -3.2200 3.0868 9 16 5.5220 -2.6919 3.3128 10 6 6.2154 -4.1754 3.9633 11 1 5.5923 -5.0461 4.1046 12 6 7.5638 -4.2269 4.2883 13 7 8.0818 -5.3350 4.7747 14 14 8.6433 -2.7233 4.0367 15 1 8.6328 -1.8945 5.2688 16 1 10.0334 -3.1555 3.7427 17 1 8.1221 -1.9246 2.8984 18 7 2.8125 -1.8058 1.2543 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 1.8933 -0.5139 -0.8901 23 1 3.1300 1.4424 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.7727 -4.0634 2.3972 27 1 3.3882 -3.5201 4.0480 28 1 9.0240 -5.3709 5.0022 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230957991.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:54 Heat of formation + Delta-G solvation = 28.430817 kcal Electronic energy + Delta-G solvation = -13217.569884 eV Core-core repulsion = 10782.894301 eV Total energy + Delta-G solvation = -2434.675583 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 228.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.66494 -37.90788 -35.95867 -34.69891 -33.60650 -30.00958 -28.16057 -27.89467 -25.62254 -24.30393 -21.31676 -19.84096 -19.25088 -18.52844 -17.15809 -16.34326 -16.12835 -16.01398 -15.17702 -14.92140 -14.68517 -14.43784 -13.53040 -13.46751 -13.20304 -13.11733 -13.02617 -12.66593 -12.59827 -12.28683 -12.13477 -11.89884 -11.87700 -11.19095 -11.08313 -10.59507 -9.10318 -8.52710 -6.27888 -0.18217 0.87629 1.25983 1.31837 1.46077 1.56114 1.76317 2.21772 2.46256 2.62759 2.85695 2.97801 3.72899 3.95559 4.04213 4.08088 4.25912 4.48505 4.69652 4.69924 4.73490 4.84065 4.91250 5.02945 5.22873 5.27793 5.69885 6.12864 6.90415 7.04621 8.59425 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.054076 B = 0.005978 C = 0.005670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.669227 B = 4682.352472 C = 4936.683317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.007 4.007 3 C -0.140 4.140 4 C 0.174 3.826 5 N -0.396 5.396 6 O 0.069 5.931 7 C 0.214 3.786 8 C 0.003 3.997 9 S -0.178 6.178 10 C -0.521 4.521 11 H 0.071 0.929 12 C 0.048 3.952 13 N -0.913 5.913 14 Si 0.913 3.087 15 H -0.261 1.261 16 H -0.261 1.261 17 H -0.234 1.234 18 N -0.492 5.492 19 H 0.052 0.948 20 H 0.054 0.946 21 H 0.100 0.900 22 H 0.110 0.890 23 H 0.046 0.954 24 H 0.101 0.899 25 H 0.054 0.946 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.392 10.956 -8.733 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 C -0.198 4.198 4 C -0.099 4.099 5 N -0.107 5.107 6 O 0.014 5.986 7 C -0.007 4.007 8 C -0.146 4.146 9 S 0.048 5.952 10 C -0.669 4.669 11 H 0.089 0.911 12 C -0.158 4.158 13 N -0.550 5.550 14 Si 0.735 3.265 15 H -0.185 1.185 16 H -0.185 1.185 17 H -0.158 1.158 18 N -0.228 5.228 19 H 0.071 0.929 20 H 0.073 0.927 21 H 0.118 0.882 22 H 0.128 0.872 23 H 0.066 0.934 24 H 0.120 0.880 25 H 0.073 0.927 26 H 0.144 0.856 27 H 0.146 0.854 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.191 12.460 -9.065 19.648 hybrid contribution 0.382 -1.384 0.770 1.629 sum -11.810 11.076 -8.295 18.192 Atomic orbital electron populations 1.21820 0.91305 1.02519 1.03891 1.19857 0.97594 0.95753 0.89541 1.21840 1.00856 0.93222 1.03922 1.26599 0.95477 0.92315 0.95532 1.74523 1.18827 1.14090 1.03278 1.85289 1.48104 1.29719 1.35457 1.27973 0.93629 0.93183 0.85903 1.21592 0.94364 0.92823 1.05808 1.84403 1.03641 1.22282 1.84903 1.22244 0.98305 0.97342 1.48970 0.91123 1.25548 0.98313 0.98947 0.93023 1.70001 1.14835 1.28104 1.42078 0.85896 0.79549 0.80008 0.81089 1.18519 1.18492 1.15765 1.71972 1.17566 1.15310 1.17919 0.92853 0.92692 0.88166 0.87171 0.93449 0.88031 0.92689 0.85579 0.85415 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.18 71.98 0.66 -1.62 15 2 C -0.01 -0.16 3.39 -11.54 -0.04 -0.20 15 3 C -0.14 -2.56 9.17 71.98 0.66 -1.90 15 4 C 0.17 5.29 6.72 138.46 0.93 6.22 15 5 N -0.40 -12.97 12.16 -60.34 -0.73 -13.71 15 6 O 0.07 2.38 11.31 74.90 0.85 3.23 15 7 C 0.21 7.48 7.77 88.38 0.69 8.17 15 8 C 0.00 0.10 6.30 71.24 0.45 0.55 15 9 S -0.18 -8.20 19.39 -56.49 -1.10 -9.29 15 10 C -0.52 -28.58 10.04 67.95 0.68 -27.90 15 11 H 0.07 4.11 8.03 -2.91 -0.02 4.08 15 12 C 0.05 2.67 5.50 84.86 0.47 3.14 15 13 N -0.91 -53.58 13.97 21.65 0.30 -53.27 15 14 Si 0.91 42.29 27.74 68.60 1.90 44.20 15 15 H -0.26 -11.77 7.11 99.48 0.71 -11.06 15 16 H -0.26 -11.48 7.11 99.48 0.71 -10.77 15 17 H -0.23 -10.60 6.74 99.48 0.67 -9.93 15 18 N -0.49 -17.10 11.55 -303.23 -3.50 -20.61 15 19 H 0.05 0.94 8.14 -2.39 -0.02 0.92 15 20 H 0.05 1.00 8.14 -2.39 -0.02 0.98 15 21 H 0.10 1.06 8.14 -2.39 -0.02 1.04 15 22 H 0.11 2.14 8.14 -2.38 -0.02 2.12 15 23 H 0.05 0.98 8.14 -2.38 -0.02 0.96 15 24 H 0.10 1.20 8.14 -2.38 -0.02 1.18 15 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 15 26 H 0.13 4.37 8.14 -2.39 -0.02 4.35 15 27 H 0.13 4.15 8.14 -2.40 -0.02 4.13 15 28 H 0.28 15.11 8.31 -92.71 -0.77 14.34 15 Total: -1.00 -62.90 264.76 3.33 -59.57 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: 1.12 Total: 3.42 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 4.50 Total: -13.54 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -3.93 Total: -87.59 kcal Atomic # 8 Polarization: 2.38 SS G_CDS: 0.85 Total: 3.23 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.90 Total: 44.20 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.10 Total: -9.29 kcal Total: -62.90 3.33 -59.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230957991.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.997 kcal (2) G-P(sol) polarization free energy of solvation -62.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds