Wall clock time and date at job start Thu Apr 9 2020 11:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37683 * 126.50212 * 2 1 4 4 C 1.34382 * 106.95872 * 180.23211 * 3 2 1 5 5 N 1.34361 * 108.34466 * 359.76748 * 4 3 2 6 6 C 1.31261 * 109.30426 * 359.97438 * 5 4 3 7 7 S 1.76208 * 125.80185 * 179.97438 * 6 5 4 8 8 C 1.80998 * 99.99889 * 0.02562 * 7 6 5 9 9 C 1.52996 * 109.47161 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.47066 * 60.00373 * 9 8 7 11 11 O 1.42903 * 109.47446 * 300.00249 * 9 8 7 12 12 C 1.50702 * 109.47159 * 180.02562 * 9 8 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 9 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 9 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 9 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 H 1.08999 * 109.46976 * 270.16831 * 1 2 3 21 21 H 1.09000 * 109.47183 * 30.16840 * 1 2 3 22 22 H 1.08996 * 109.47016 * 150.17218 * 1 2 3 23 23 H 1.08000 * 126.51974 * 359.96059 * 3 2 1 24 24 H 1.08000 * 125.83071 * 179.73977 * 4 3 2 25 25 H 1.09004 * 109.46826 * 60.00137 * 8 7 6 26 26 H 1.09000 * 109.47766 * 300.00468 * 8 7 6 27 27 H 0.96697 * 113.99557 * 300.00558 * 11 9 8 28 28 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2840 1.1067 0.0000 4 6 3.5504 0.6572 -0.0052 5 7 3.5223 -0.6861 -0.0032 6 6 2.2747 -1.0940 0.0037 7 16 1.7391 -2.7727 0.0081 8 6 3.3417 -3.6139 0.0014 9 6 3.1229 -5.1282 0.0048 10 1 2.5580 -5.4156 -0.8820 11 8 2.3938 -5.5016 1.1758 12 6 4.4572 -5.8286 -0.0001 13 1 5.3701 -5.2514 -0.0048 14 6 4.5127 -7.2063 0.0076 15 7 3.4011 -7.9091 0.0136 16 14 6.1667 -8.0744 0.0092 17 1 7.2557 -7.0648 0.0019 18 1 6.2820 -8.9175 1.2263 19 1 6.2774 -8.9311 -1.1987 20 1 -0.3633 0.0030 1.0277 21 1 -0.3633 0.8885 -0.5164 22 1 -0.3633 -0.8915 -0.5111 23 1 1.9686 2.1397 -0.0006 24 1 4.4391 1.2709 -0.0106 25 1 3.9064 -3.3268 0.8885 26 1 3.8981 -3.3288 -0.8915 27 1 2.8381 -5.2756 2.0044 28 1 3.4402 -8.8783 0.0186 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253393434.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:55 Heat of formation + Delta-G solvation = -15.964485 kcal Electronic energy + Delta-G solvation = -13306.927729 eV Core-core repulsion = 10870.327021 eV Total energy + Delta-G solvation = -2436.600708 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 228.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.70050 -37.91918 -34.93943 -34.29445 -31.66210 -30.51847 -27.84762 -27.37483 -23.43478 -22.53446 -21.93787 -19.27550 -18.67692 -16.77545 -16.74740 -16.68458 -16.20277 -15.95863 -15.25169 -15.24360 -14.46437 -13.99028 -13.93257 -13.49532 -13.39342 -13.22947 -12.79273 -12.72959 -12.05346 -11.66701 -11.16188 -11.02313 -10.73345 -10.66236 -10.35259 -10.27515 -8.35797 -8.17270 -6.43848 0.35430 0.93970 1.29039 1.41173 1.43190 1.55624 2.04562 2.06889 2.39880 3.09022 3.89963 3.93961 4.09890 4.24670 4.29581 4.36125 4.45700 4.63972 4.66716 4.94113 5.21411 5.50776 5.65201 5.73116 5.97097 6.01251 6.64994 6.94483 7.27667 7.44812 8.87571 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.053050 B = 0.006154 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.675535 B = 4549.139887 C = 4983.924556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.451 5.451 3 C -0.033 4.033 4 C -0.054 4.054 5 N -0.532 5.532 6 C 0.161 3.839 7 S -0.024 6.024 8 C -0.090 4.090 9 C 0.247 3.753 10 H 0.035 0.965 11 O -0.570 6.570 12 C -0.584 4.584 13 H 0.060 0.940 14 C 0.030 3.970 15 N -0.895 5.895 16 Si 0.965 3.035 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.277 1.277 20 H 0.091 0.909 21 H 0.123 0.877 22 H 0.082 0.918 23 H 0.224 0.776 24 H 0.191 0.809 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.359 0.641 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.176 16.941 0.448 17.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.137 5.137 3 C -0.168 4.168 4 C -0.203 4.203 5 N -0.255 5.255 6 C -0.209 4.209 7 S 0.207 5.793 8 C -0.239 4.239 9 C 0.187 3.813 10 H 0.053 0.947 11 O -0.374 6.374 12 C -0.623 4.623 13 H 0.078 0.922 14 C -0.174 4.174 15 N -0.532 5.532 16 Si 0.789 3.211 17 H -0.190 1.190 18 H -0.202 1.202 19 H -0.202 1.202 20 H 0.110 0.890 21 H 0.141 0.859 22 H 0.101 0.899 23 H 0.240 0.760 24 H 0.208 0.792 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.205 0.795 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.305 15.596 -0.010 16.822 hybrid contribution 1.852 0.587 0.278 1.963 sum -4.453 16.183 0.267 16.786 Atomic orbital electron populations 1.22393 0.73904 1.06191 1.05165 1.45819 1.08847 1.04706 1.54293 1.23491 0.90104 0.93562 1.09647 1.22846 0.98654 0.90234 1.08601 1.70742 1.18507 1.14143 1.22101 1.25377 0.89015 0.95596 1.10887 1.85389 1.13105 0.87495 1.93345 1.24237 0.94800 0.99816 1.05070 1.18986 0.91669 0.84934 0.85701 0.94702 1.86516 1.49465 1.85525 1.15920 1.21895 0.93017 0.92367 1.55056 0.92162 1.25886 1.00204 0.98214 0.93058 1.70209 1.28624 1.06583 1.47769 0.85428 0.79386 0.78368 0.77908 1.18987 1.20170 1.20216 0.89011 0.85900 0.89880 0.75962 0.79246 0.90404 0.90384 0.79538 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.05 11.01 127.77 1.41 2.46 15 2 N -0.45 -11.68 3.20 -547.27 -1.75 -13.43 15 3 C -0.03 -0.71 11.60 82.89 0.96 0.25 15 4 C -0.05 -1.52 11.84 83.42 0.99 -0.53 15 5 N -0.53 -19.95 10.60 -196.47 -2.08 -22.03 15 6 C 0.16 5.68 7.96 179.70 1.43 7.11 15 7 S -0.02 -0.93 21.27 -56.49 -1.20 -2.14 15 8 C -0.09 -4.01 4.83 71.98 0.35 -3.66 15 9 C 0.25 12.89 2.88 29.85 0.09 12.97 15 10 H 0.04 2.02 8.14 -2.38 -0.02 2.00 15 11 O -0.57 -29.70 12.31 -148.98 -1.83 -31.53 15 12 C -0.58 -32.57 8.76 25.60 0.22 -32.35 15 13 H 0.06 3.30 7.74 -2.91 -0.02 3.27 15 14 C 0.03 1.66 5.40 84.66 0.46 2.12 15 15 N -0.90 -53.19 12.83 21.45 0.28 -52.91 15 16 Si 0.96 43.57 29.54 68.60 2.03 45.60 15 17 H -0.27 -11.65 7.11 99.48 0.71 -10.95 15 18 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 15 20 H 0.09 1.28 8.14 -2.39 -0.02 1.26 15 21 H 0.12 1.10 8.14 -2.39 -0.02 1.08 15 22 H 0.08 1.51 7.73 -2.39 -0.02 1.49 15 23 H 0.22 2.41 8.06 -2.91 -0.02 2.39 15 24 H 0.19 4.13 8.06 -2.91 -0.02 4.11 15 25 H 0.08 3.50 8.14 -2.39 -0.02 3.48 15 26 H 0.08 3.58 8.14 -2.39 -0.02 3.56 15 27 H 0.36 16.68 9.04 -74.06 -0.67 16.01 15 28 H 0.26 14.73 8.31 -92.70 -0.77 13.96 15 Total: -1.00 -71.13 265.00 1.83 -69.31 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.50 Total: 18.76 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 5.90 Total: -11.63 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -3.56 Total: -88.37 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -1.83 Total: -31.53 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -1.20 Total: -2.14 kcal Total: -71.13 1.83 -69.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253393434.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.341 kcal (2) G-P(sol) polarization free energy of solvation -71.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds