Wall clock time and date at job start Thu Apr 9 2020 11:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35958 * 116.99807 * 2 1 4 4 C 1.38640 * 120.04696 * 0.02562 * 3 2 1 5 5 C 1.38384 * 119.94577 * 179.97438 * 4 3 2 6 6 F 1.35096 * 119.98153 * 180.02562 * 5 4 3 7 7 C 1.38478 * 120.04162 * 359.97438 * 5 4 3 8 8 C 1.50699 * 119.94779 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47030 * 85.00078 * 8 7 5 10 10 H 1.07997 * 119.99962 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99940 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99936 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99923 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47109 * 60.00177 * 13 11 9 15 15 H 1.48501 * 109.46901 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47259 * 300.00308 * 13 11 9 17 17 C 1.38246 * 120.09901 * 0.02562 * 7 5 4 18 18 C 1.38320 * 120.05431 * 359.74437 * 17 7 5 19 19 F 1.35097 * 120.02410 * 180.25650 * 18 17 7 20 20 H 1.09002 * 109.47382 * 59.99931 * 1 2 3 21 21 H 1.09001 * 109.46938 * 299.99917 * 1 2 3 22 22 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 23 23 H 1.08003 * 120.03347 * 359.95159 * 4 3 2 24 24 H 1.09003 * 109.46879 * 204.99984 * 8 7 5 25 25 H 1.08997 * 109.47484 * 324.99661 * 8 7 5 26 26 H 0.96999 * 120.00156 * 179.97438 * 12 11 9 27 27 H 1.08003 * 119.96808 * 180.02562 * 17 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2921 2.3747 0.0005 5 6 1.9224 3.6067 0.0011 6 9 1.1882 4.7407 0.0021 7 6 3.3054 3.6777 0.0016 8 6 3.9897 5.0204 0.0028 9 6 4.1070 5.5232 1.4186 10 1 3.7239 4.9300 2.2358 11 6 4.7033 6.7406 1.6707 12 7 5.1693 7.4631 0.6756 13 14 4.8480 7.3641 3.4256 14 1 5.6439 6.4015 4.2289 15 1 5.5225 8.6871 3.4267 16 1 3.4922 7.4996 4.0162 17 6 4.0592 2.5189 0.0011 18 6 3.4333 1.2854 0.0053 19 9 4.1705 0.1533 0.0101 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.2134 2.3197 0.0002 24 1 4.9847 4.9215 -0.4313 25 1 3.4049 5.7268 -0.5864 26 1 5.5886 8.3197 0.8528 27 1 5.1376 2.5768 0.0019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259128324.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:58 Heat of formation + Delta-G solvation = -113.062162 kcal Electronic energy + Delta-G solvation = -15347.912202 eV Core-core repulsion = 12320.967886 eV Total energy + Delta-G solvation = -3026.944317 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.070 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.44239 -48.27147 -39.68020 -37.23932 -33.32092 -31.03853 -29.91440 -27.95904 -26.35080 -23.36362 -22.46819 -20.80907 -18.26838 -17.16186 -16.69025 -16.43798 -15.98689 -15.46461 -14.87467 -14.74481 -14.60981 -14.27444 -14.04500 -13.54616 -12.49331 -12.32501 -12.15991 -11.89920 -11.53740 -11.38221 -11.15444 -10.67455 -10.60209 -10.55337 -9.72910 -9.48171 -8.50092 -8.47043 -7.60191 -6.09035 -4.13831 1.35868 1.57760 3.22206 3.30689 3.34585 3.37652 3.83048 4.41343 4.49746 4.65655 4.95383 5.06751 5.10296 5.26793 5.38159 5.38750 5.55936 5.82149 6.07117 6.38910 6.60677 6.63443 6.99118 7.39403 7.48425 7.56152 7.84692 8.20642 8.89270 9.50256 11.00772 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.035990 B = 0.007284 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.806976 B = 3842.987354 C = 4126.582702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.092 3.908 4 C -0.221 4.221 5 C 0.126 3.874 6 F -0.126 7.126 7 C -0.073 4.073 8 C 0.052 3.948 9 C -0.516 4.516 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.892 5.892 13 Si 0.898 3.102 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.094 4.094 18 C 0.057 3.943 19 F -0.137 7.137 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.099 0.901 23 H 0.141 0.859 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.264 0.736 27 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.560 -11.211 -1.955 13.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.047 3.953 4 C -0.241 4.241 5 C 0.106 3.894 6 F -0.105 7.105 7 C -0.075 4.075 8 C 0.016 3.984 9 C -0.554 4.554 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.530 5.530 13 Si 0.725 3.275 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.113 4.113 18 C 0.037 3.963 19 F -0.116 7.116 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.117 0.883 23 H 0.159 0.841 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.393 -11.227 -1.999 13.591 hybrid contribution -0.227 0.546 0.983 1.147 sum -7.620 -10.682 -1.016 13.160 Atomic orbital electron populations 1.23061 0.78467 1.03766 1.01527 1.86108 1.21310 1.25722 1.89335 1.18443 0.90432 0.84727 1.01742 1.20902 1.00584 0.90629 1.11959 1.17265 0.89131 0.81318 1.01679 1.91502 1.76638 1.48912 1.93408 1.20611 0.91370 0.98921 0.96564 1.18310 0.95766 0.85947 0.98422 1.20954 1.39117 1.03889 0.91475 0.92471 1.24981 0.95175 0.96504 0.97403 1.69935 1.39108 1.13001 1.31004 0.86561 0.78428 0.78006 0.84513 1.20066 1.21147 1.20103 1.20854 1.01412 0.88675 1.00378 1.16959 0.85685 0.82947 1.10728 1.91453 1.76519 1.49081 1.94554 0.92584 0.92546 0.88277 0.84112 0.94509 0.94480 0.92641 0.83283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 15 2 O -0.31 -4.62 10.36 -19.61 -0.20 -4.83 15 3 C 0.09 1.54 6.69 -39.19 -0.26 1.28 15 4 C -0.22 -3.62 9.01 -39.38 -0.35 -3.98 15 5 C 0.13 2.48 7.24 -39.44 -0.29 2.19 15 6 F -0.13 -2.65 16.56 2.25 0.04 -2.61 15 7 C -0.07 -1.56 5.08 -104.53 -0.53 -2.09 15 8 C 0.05 1.32 4.87 -29.03 -0.14 1.18 15 9 C -0.52 -14.28 9.09 -34.44 -0.31 -14.59 15 10 H 0.06 1.57 7.74 -52.49 -0.41 1.16 15 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 12 N -0.89 -26.01 13.29 55.43 0.74 -25.27 15 13 Si 0.90 21.39 29.54 -169.99 -5.02 16.36 15 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 17 C -0.09 -1.79 9.65 -39.55 -0.38 -2.17 15 18 C 0.06 1.02 7.31 -39.30 -0.29 0.73 15 19 F -0.14 -2.44 17.11 2.25 0.04 -2.40 15 20 H 0.06 0.49 7.66 -51.93 -0.40 0.10 15 21 H 0.06 0.52 7.66 -51.93 -0.40 0.12 15 22 H 0.10 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.14 1.87 6.30 -52.48 -0.33 1.54 15 24 H 0.04 0.95 8.05 -51.93 -0.42 0.53 15 25 H 0.04 1.00 7.79 -51.93 -0.40 0.59 15 26 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 27 H 0.15 2.63 8.06 -52.48 -0.42 2.21 15 LS Contribution 252.10 15.07 3.80 3.80 Total: -1.00 -29.87 252.10 -4.61 -34.48 By element: Atomic # 1 Polarization: -2.64 SS G_CDS: -2.33 Total: -4.97 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -1.66 Total: -14.56 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.74 Total: -25.27 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.20 Total: -4.83 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.08 Total: -5.01 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.87 -4.61 -34.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259128324.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.580 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds