Wall clock time and date at job start Thu Apr 9 2020 11:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35958 * 116.99807 * 2 1 4 4 C 1.38640 * 120.04696 * 0.02562 * 3 2 1 5 5 C 1.38384 * 119.94577 * 179.97438 * 4 3 2 6 6 F 1.35096 * 119.98153 * 180.02562 * 5 4 3 7 7 C 1.38478 * 120.04162 * 359.97438 * 5 4 3 8 8 C 1.50699 * 119.94779 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47030 * 85.00078 * 8 7 5 10 10 H 1.07997 * 119.99962 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99940 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99936 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99923 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47109 * 60.00177 * 13 11 9 15 15 H 1.48501 * 109.46901 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47259 * 300.00308 * 13 11 9 17 17 C 1.38246 * 120.09901 * 0.02562 * 7 5 4 18 18 C 1.38320 * 120.05431 * 359.74437 * 17 7 5 19 19 F 1.35097 * 120.02410 * 180.25650 * 18 17 7 20 20 H 1.09002 * 109.47382 * 59.99931 * 1 2 3 21 21 H 1.09001 * 109.46938 * 299.99917 * 1 2 3 22 22 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 23 23 H 1.08003 * 120.03347 * 359.95159 * 4 3 2 24 24 H 1.09003 * 109.46879 * 204.99984 * 8 7 5 25 25 H 1.08997 * 109.47484 * 324.99661 * 8 7 5 26 26 H 0.96999 * 120.00156 * 179.97438 * 12 11 9 27 27 H 1.08003 * 119.96808 * 180.02562 * 17 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2921 2.3747 0.0005 5 6 1.9224 3.6067 0.0011 6 9 1.1882 4.7407 0.0021 7 6 3.3054 3.6777 0.0016 8 6 3.9897 5.0204 0.0028 9 6 4.1070 5.5232 1.4186 10 1 3.7239 4.9300 2.2358 11 6 4.7033 6.7406 1.6707 12 7 5.1693 7.4631 0.6756 13 14 4.8480 7.3641 3.4256 14 1 5.6439 6.4015 4.2289 15 1 5.5225 8.6871 3.4267 16 1 3.4922 7.4996 4.0162 17 6 4.0592 2.5189 0.0011 18 6 3.4333 1.2854 0.0053 19 9 4.1705 0.1533 0.0101 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.2134 2.3197 0.0002 24 1 4.9847 4.9215 -0.4313 25 1 3.4049 5.7268 -0.5864 26 1 5.5886 8.3197 0.8528 27 1 5.1376 2.5768 0.0019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259128324.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:58 Heat of formation + Delta-G solvation = -130.656905 kcal Electronic energy + Delta-G solvation = -15348.675168 eV Core-core repulsion = 12320.967886 eV Total energy + Delta-G solvation = -3027.707282 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.070 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.86198 -49.85139 -40.95662 -38.62591 -35.31562 -32.75946 -31.33929 -29.30630 -27.80068 -25.20307 -23.86817 -22.41389 -19.55249 -18.59397 -18.55539 -18.12252 -17.26384 -16.94962 -16.43419 -16.33342 -16.05293 -15.62008 -15.30714 -15.03546 -14.42849 -14.12915 -13.63108 -13.18582 -13.07066 -12.90278 -12.54238 -12.49708 -12.37890 -12.03298 -11.62124 -11.37327 -10.61171 -9.93561 -9.09573 -8.20953 -6.34747 -0.08938 0.12793 1.40892 1.43392 1.51430 2.10696 2.31187 2.45934 3.09034 3.13479 3.22891 3.61413 3.86358 4.06839 4.34855 4.40866 4.42989 4.70255 4.74159 4.88029 4.97722 5.11886 5.28304 5.57803 5.62452 5.70380 6.10549 6.21210 6.75646 7.33665 8.87975 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.035990 B = 0.007284 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.806976 B = 3842.987354 C = 4126.582702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.320 6.320 3 C 0.110 3.890 4 C -0.203 4.203 5 C 0.112 3.888 6 F -0.139 7.139 7 C -0.103 4.103 8 C 0.061 3.939 9 C -0.533 4.533 10 H 0.055 0.945 11 C 0.008 3.992 12 N -0.927 5.927 13 Si 0.964 3.036 14 H -0.266 1.266 15 H -0.280 1.280 16 H -0.270 1.270 17 C -0.092 4.092 18 C 0.051 3.949 19 F -0.136 7.136 20 H 0.071 0.929 21 H 0.068 0.932 22 H 0.129 0.871 23 H 0.179 0.821 24 H 0.019 0.981 25 H 0.008 0.992 26 H 0.267 0.733 27 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.993 -12.794 -1.012 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.234 6.234 3 C 0.064 3.936 4 C -0.222 4.222 5 C 0.093 3.907 6 F -0.117 7.117 7 C -0.104 4.104 8 C 0.024 3.976 9 C -0.571 4.571 10 H 0.073 0.927 11 C -0.191 4.191 12 N -0.567 5.567 13 Si 0.789 3.211 14 H -0.191 1.191 15 H -0.205 1.205 16 H -0.195 1.195 17 C -0.110 4.110 18 C 0.031 3.969 19 F -0.114 7.114 20 H 0.089 0.911 21 H 0.086 0.914 22 H 0.147 0.853 23 H 0.196 0.804 24 H 0.037 0.963 25 H 0.027 0.973 26 H 0.075 0.925 27 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.840 -12.834 -1.058 15.620 hybrid contribution 0.132 0.887 0.635 1.099 sum -8.708 -11.947 -0.423 14.790 Atomic orbital electron populations 1.23518 0.75517 1.06316 1.02812 1.86132 1.24266 1.24370 1.88602 1.18465 0.90047 0.85675 0.99445 1.21091 1.02296 0.88782 1.10011 1.17457 0.88603 0.82156 1.02491 1.91466 1.76730 1.49884 1.93659 1.20246 0.92374 0.97535 1.00268 1.17998 0.94767 0.87900 0.96902 1.21302 1.38949 1.04232 0.92578 0.92654 1.25880 0.94734 0.96720 1.01726 1.70055 1.39929 1.13449 1.33238 0.85509 0.78676 0.77632 0.79330 1.19066 1.20510 1.19463 1.20776 1.01582 0.88620 1.00064 1.16946 0.86496 0.82471 1.10961 1.91456 1.76655 1.48775 1.94550 0.91081 0.91361 0.85340 0.80427 0.96271 0.97345 0.92451 0.82960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.30 15 2 O -0.32 -8.34 10.36 -93.08 -0.96 -9.31 15 3 C 0.11 3.39 6.69 22.53 0.15 3.54 15 4 C -0.20 -6.10 9.01 22.40 0.20 -5.90 15 5 C 0.11 4.38 7.24 22.36 0.16 4.54 15 6 F -0.14 -5.84 16.56 44.97 0.74 -5.10 15 7 C -0.10 -4.45 5.08 -19.81 -0.10 -4.55 15 8 C 0.06 3.23 4.87 29.10 0.14 3.37 15 9 C -0.53 -30.14 9.09 25.60 0.23 -29.91 15 10 H 0.06 3.07 7.74 -2.91 -0.02 3.05 15 11 C 0.01 0.46 5.46 84.66 0.46 0.92 15 12 N -0.93 -55.37 13.29 21.45 0.28 -55.08 15 13 Si 0.96 44.00 29.54 68.60 2.03 46.03 15 14 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 15 H -0.28 -12.40 7.11 99.48 0.71 -11.69 15 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 17 C -0.09 -3.47 9.65 22.29 0.22 -3.26 15 18 C 0.05 1.76 7.31 22.45 0.16 1.93 15 19 F -0.14 -4.59 17.11 44.97 0.77 -3.82 15 20 H 0.07 0.92 7.66 -2.39 -0.02 0.90 15 21 H 0.07 0.93 7.66 -2.39 -0.02 0.91 15 22 H 0.13 1.25 8.14 -2.38 -0.02 1.23 15 23 H 0.18 3.96 6.30 -2.91 -0.02 3.94 15 24 H 0.02 1.04 8.05 -2.39 -0.02 1.02 15 25 H 0.01 0.47 7.79 -2.39 -0.02 0.46 15 26 H 0.27 14.96 8.31 -92.71 -0.77 14.19 15 27 H 0.15 5.50 8.06 -2.91 -0.02 5.47 15 Total: -1.00 -64.83 252.10 6.80 -58.03 By element: Atomic # 1 Polarization: -3.91 SS G_CDS: 1.19 Total: -2.72 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 2.74 Total: -28.03 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.28 Total: -55.08 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.96 Total: -9.31 kcal Atomic # 9 Polarization: -10.43 SS G_CDS: 1.51 Total: -8.92 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -64.83 6.80 -58.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259128324.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.626 kcal (2) G-P(sol) polarization free energy of solvation -64.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds