Wall clock time and date at job start Thu Apr 9 2020 11:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00177 * 2 1 4 4 H 1.48505 * 109.46858 * 270.00709 * 3 2 1 5 5 H 1.48500 * 109.46971 * 30.00201 * 3 2 1 6 6 H 1.48495 * 109.46946 * 150.00605 * 3 2 1 7 7 C 1.37876 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99736 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00182 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47302 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46919 * 179.97438 * 10 9 7 12 12 O 1.45197 * 109.46746 * 180.02562 * 11 10 9 13 13 C 1.34231 * 116.99960 * 180.02562 * 12 11 10 14 14 O 1.20822 * 119.99767 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00010 * 179.97438 * 13 12 11 16 16 H 1.09005 * 109.47412 * 54.99602 * 15 13 12 17 17 O 1.42896 * 109.47193 * 174.99876 * 15 13 12 18 18 C 1.53003 * 109.47204 * 294.99961 * 15 13 12 19 19 C 1.53001 * 117.51964 * 111.28411 * 18 15 13 20 20 C 1.52999 * 60.00190 * 107.47982 * 19 18 15 21 21 H 0.97003 * 119.99376 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47521 * 59.99772 * 9 7 2 23 23 H 1.09003 * 109.46861 * 299.99979 * 9 7 2 24 24 H 1.08999 * 109.46900 * 59.99919 * 10 9 7 25 25 H 1.08996 * 109.46513 * 299.99816 * 10 9 7 26 26 H 1.08997 * 109.47228 * 59.99721 * 11 10 9 27 27 H 1.09003 * 109.47074 * 299.99498 * 11 10 9 28 28 H 0.96696 * 114.00050 * 59.99875 * 17 15 13 29 29 H 1.09002 * 115.54973 * 325.58194 * 18 15 13 30 30 H 1.09001 * 117.49733 * 214.97413 * 19 18 15 31 31 H 1.08995 * 117.49577 * 359.97438 * 19 18 15 32 32 H 1.09004 * 117.50150 * 252.51496 * 20 19 18 33 33 H 1.09004 * 117.49681 * 107.48417 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4801 -4.9871 0.0001 12 8 2.4236 -6.0908 0.0007 13 6 1.9105 -7.3312 0.0008 14 8 0.7127 -7.4894 0.0008 15 6 2.8284 -8.5263 0.0008 16 1 3.5174 -8.4554 0.8426 17 8 2.0542 -9.7216 0.1184 18 6 3.6226 -8.5595 -1.3065 19 6 5.1261 -8.2874 -1.2275 20 6 4.6185 -9.7049 -1.4993 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8902 23 1 0.6247 -2.5570 0.8897 24 1 2.8719 -3.6044 0.8894 25 1 2.8718 -3.6044 -0.8905 26 1 0.8531 -5.0451 -0.8896 27 1 0.8538 -5.0446 0.8904 28 1 1.4182 -9.8503 -0.5985 29 1 3.0918 -8.2004 -2.1883 30 1 5.5844 -7.7492 -2.0572 31 1 5.5497 -8.0842 -0.2440 32 1 4.7082 -10.4346 -0.6944 33 1 4.7429 -10.0993 -2.5078 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730879708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:15 Heat of formation + Delta-G solvation = -131.930880 kcal Electronic energy + Delta-G solvation = -15391.827832 eV Core-core repulsion = 12610.985917 eV Total energy + Delta-G solvation = -2780.841916 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.56609 -38.27835 -36.63198 -35.47944 -34.01012 -31.75197 -28.86628 -26.80787 -23.43114 -22.61481 -21.88050 -20.91054 -20.36084 -18.05955 -17.32016 -16.62494 -16.39387 -16.05964 -15.16003 -14.54507 -14.43141 -13.95989 -13.70692 -13.16306 -12.33373 -12.19444 -12.00291 -11.87917 -11.75799 -11.16276 -10.98774 -10.90525 -10.66953 -10.63250 -10.54469 -10.42363 -10.05870 -9.75189 -9.48877 -9.18013 -8.40370 -6.05117 -4.08330 2.17094 2.73946 3.29906 3.34393 3.36167 3.39657 4.07528 4.29015 4.41866 4.54716 4.63775 4.84990 4.93405 5.23862 5.30893 5.39510 5.54075 5.58596 5.61891 5.79284 5.85793 5.97596 6.42999 6.51138 6.79341 6.95471 7.16002 7.58113 7.68885 7.82779 7.93062 8.33973 8.97917 9.56109 11.06353 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.046806 B = 0.004393 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.073673 B = 6372.111088 C = 6854.657822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.066 3.934 12 O -0.351 6.351 13 C 0.431 3.569 14 O -0.507 6.507 15 C 0.151 3.849 16 H 0.135 0.865 17 O -0.531 6.531 18 C -0.195 4.195 19 C -0.160 4.160 20 C -0.161 4.161 21 H 0.262 0.738 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.386 0.614 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.296 -17.581 -2.464 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.007 4.007 12 O -0.267 6.267 13 C 0.273 3.727 14 O -0.395 6.395 15 C 0.090 3.910 16 H 0.152 0.848 17 O -0.336 6.336 18 C -0.213 4.213 19 C -0.197 4.197 20 C -0.198 4.198 21 H 0.071 0.929 22 H 0.037 0.963 23 H 0.038 0.962 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.235 0.765 29 H 0.129 0.871 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.120 -17.533 -1.921 19.417 hybrid contribution -0.220 1.190 -0.542 1.326 sum 7.900 -16.343 -2.464 18.319 Atomic orbital electron populations 1.69972 1.06104 1.26780 1.50512 1.25034 0.94879 0.99381 0.95164 0.86539 0.79811 0.83198 0.78141 1.20604 1.21174 1.19793 1.21168 0.93123 0.90663 1.51058 0.92412 1.19060 0.93854 0.90777 0.97687 1.21762 0.99914 0.90908 1.01994 1.23541 0.91277 0.83692 1.02145 1.86517 1.42594 1.14983 1.82620 1.24540 0.89193 0.86012 0.72976 1.90675 1.16843 1.86798 1.45188 1.20980 0.90170 0.81012 0.98810 0.84780 1.86622 1.55373 1.38430 1.53213 1.22749 0.93263 1.06760 0.98544 1.22994 0.94017 0.98667 1.04028 1.22929 1.01817 0.91724 1.03363 0.92876 0.96252 0.96224 0.92100 0.92115 0.91544 0.91486 0.76487 0.87094 0.88055 0.88022 0.88047 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.24 5.53 -26.73 -0.15 -2.39 16 11 C 0.07 1.23 5.47 37.16 0.20 1.43 16 12 O -0.35 -5.78 10.21 -39.26 -0.40 -6.19 16 13 C 0.43 6.49 7.25 36.00 0.26 6.75 16 14 O -0.51 -9.07 16.07 -25.46 -0.41 -9.48 16 15 C 0.15 1.66 3.69 -27.88 -0.10 1.56 16 16 H 0.13 1.30 7.90 -51.93 -0.41 0.89 16 17 O -0.53 -5.84 12.90 -55.14 -0.71 -6.56 16 18 C -0.19 -1.80 5.34 -90.61 -0.48 -2.29 16 19 C -0.16 -1.30 10.18 -26.73 -0.27 -1.57 16 20 C -0.16 -1.19 10.16 -26.73 -0.27 -1.46 16 21 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 22 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 27 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 28 H 0.39 3.36 8.79 45.56 0.40 3.76 16 29 H 0.11 1.07 8.11 -51.93 -0.42 0.65 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 292.66 15.07 4.41 4.41 Total: -1.00 -31.90 292.66 -6.95 -38.86 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.19 Total: -0.45 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -1.36 Total: -10.98 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.74 Total: -26.10 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -1.52 Total: -22.22 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.90 -6.95 -38.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730879708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.073 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds