Wall clock time and date at job start Thu Apr 9 2020 11:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00177 * 2 1 4 4 H 1.48505 * 109.46858 * 270.00709 * 3 2 1 5 5 H 1.48500 * 109.46971 * 30.00201 * 3 2 1 6 6 H 1.48495 * 109.46946 * 150.00605 * 3 2 1 7 7 C 1.37876 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99736 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00182 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47302 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46919 * 179.97438 * 10 9 7 12 12 O 1.45197 * 109.46746 * 180.02562 * 11 10 9 13 13 C 1.34231 * 116.99960 * 180.02562 * 12 11 10 14 14 O 1.20822 * 119.99767 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00010 * 179.97438 * 13 12 11 16 16 H 1.09005 * 109.47412 * 54.99602 * 15 13 12 17 17 O 1.42896 * 109.47193 * 174.99876 * 15 13 12 18 18 C 1.53003 * 109.47204 * 294.99961 * 15 13 12 19 19 C 1.53001 * 117.51964 * 111.28411 * 18 15 13 20 20 C 1.52999 * 60.00190 * 107.47982 * 19 18 15 21 21 H 0.97003 * 119.99376 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47521 * 59.99772 * 9 7 2 23 23 H 1.09003 * 109.46861 * 299.99979 * 9 7 2 24 24 H 1.08999 * 109.46900 * 59.99919 * 10 9 7 25 25 H 1.08996 * 109.46513 * 299.99816 * 10 9 7 26 26 H 1.08997 * 109.47228 * 59.99721 * 11 10 9 27 27 H 1.09003 * 109.47074 * 299.99498 * 11 10 9 28 28 H 0.96696 * 114.00050 * 59.99875 * 17 15 13 29 29 H 1.09002 * 115.54973 * 325.58194 * 18 15 13 30 30 H 1.09001 * 117.49733 * 214.97413 * 19 18 15 31 31 H 1.08995 * 117.49577 * 359.97438 * 19 18 15 32 32 H 1.09004 * 117.50150 * 252.51496 * 20 19 18 33 33 H 1.09004 * 117.49681 * 107.48417 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4801 -4.9871 0.0001 12 8 2.4236 -6.0908 0.0007 13 6 1.9105 -7.3312 0.0008 14 8 0.7127 -7.4894 0.0008 15 6 2.8284 -8.5263 0.0008 16 1 3.5174 -8.4554 0.8426 17 8 2.0542 -9.7216 0.1184 18 6 3.6226 -8.5595 -1.3065 19 6 5.1261 -8.2874 -1.2275 20 6 4.6185 -9.7049 -1.4993 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8902 23 1 0.6247 -2.5570 0.8897 24 1 2.8719 -3.6044 0.8894 25 1 2.8718 -3.6044 -0.8905 26 1 0.8531 -5.0451 -0.8896 27 1 0.8538 -5.0446 0.8904 28 1 1.4182 -9.8503 -0.5985 29 1 3.0918 -8.2004 -2.1883 30 1 5.5844 -7.7492 -2.0572 31 1 5.5497 -8.0842 -0.2440 32 1 4.7082 -10.4346 -0.6944 33 1 4.7429 -10.0993 -2.5078 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730879708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:14 Heat of formation + Delta-G solvation = -152.099484 kcal Electronic energy + Delta-G solvation = -15392.702409 eV Core-core repulsion = 12610.985917 eV Total energy + Delta-G solvation = -2781.716492 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.78814 -39.18780 -37.86516 -36.37952 -35.93136 -33.71423 -30.04752 -28.52622 -25.25168 -23.24152 -22.87133 -22.19832 -21.88779 -19.25250 -18.68842 -18.15811 -17.74359 -17.28909 -16.50332 -16.16991 -15.54554 -15.28620 -14.78170 -14.34312 -14.03793 -13.85387 -13.75529 -13.04897 -12.83523 -12.52697 -12.42513 -12.32735 -12.11422 -12.09828 -11.70659 -11.53237 -11.44953 -11.29336 -11.21256 -10.90370 -10.58176 -8.22623 -6.34418 0.96746 1.41283 1.43089 1.50882 1.55385 2.41016 2.66237 3.11472 3.28022 3.45088 3.65305 3.92036 3.96291 4.02096 4.03587 4.22117 4.37491 4.49721 4.77123 4.83259 4.85148 5.02120 5.05663 5.15447 5.30189 5.34899 5.48631 5.61670 5.78826 6.17557 6.35004 6.61348 6.81587 7.35419 8.89691 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.046806 B = 0.004393 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.073673 B = 6372.111088 C = 6854.657822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.092 4.092 11 C 0.075 3.925 12 O -0.348 6.348 13 C 0.430 3.570 14 O -0.539 6.539 15 C 0.163 3.837 16 H 0.153 0.847 17 O -0.536 6.536 18 C -0.209 4.209 19 C -0.162 4.162 20 C -0.144 4.144 21 H 0.265 0.735 22 H -0.004 1.004 23 H -0.004 1.004 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.395 0.605 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.330 -18.092 -2.619 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.130 4.130 11 C 0.002 3.998 12 O -0.264 6.264 13 C 0.274 3.726 14 O -0.429 6.429 15 C 0.102 3.898 16 H 0.170 0.830 17 O -0.344 6.344 18 C -0.228 4.228 19 C -0.198 4.198 20 C -0.181 4.181 21 H 0.073 0.927 22 H 0.015 0.985 23 H 0.014 0.986 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.246 0.754 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.170 -18.070 -2.083 20.840 hybrid contribution -0.883 1.266 -0.502 1.623 sum 9.287 -16.804 -2.585 19.373 Atomic orbital electron populations 1.70108 1.07938 1.27950 1.51465 1.26020 0.95774 1.03565 0.94537 0.85376 0.78654 0.78042 0.78554 1.19681 1.20863 1.18473 1.21623 0.93786 0.91812 1.50903 0.91566 1.18950 0.94308 0.92599 0.95413 1.21449 0.98682 0.90187 1.02681 1.23160 0.91071 0.83898 1.01679 1.86508 1.41800 1.15247 1.82869 1.25557 0.89519 0.86148 0.71424 1.90663 1.18511 1.86998 1.46722 1.21114 0.89345 0.78818 1.00539 0.83023 1.86605 1.55762 1.37964 1.54026 1.22665 0.93744 1.09118 0.97262 1.23121 0.92737 0.99330 1.04658 1.23009 0.99421 0.91300 1.04328 0.92677 0.98528 0.98592 0.91384 0.91277 0.91978 0.92148 0.75435 0.87773 0.87671 0.87342 0.87430 0.87143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 3 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.54 -30.65 9.11 25.60 0.23 -30.42 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.09 -3.81 5.53 30.60 0.17 -3.64 16 11 C 0.08 2.81 5.47 71.98 0.39 3.20 16 12 O -0.35 -11.18 10.21 -51.43 -0.53 -11.71 16 13 C 0.43 12.61 7.25 71.24 0.52 13.13 16 14 O -0.54 -19.27 16.07 28.40 0.46 -18.81 16 15 C 0.16 3.29 3.69 29.85 0.11 3.40 16 16 H 0.15 2.55 7.90 -2.38 -0.02 2.53 16 17 O -0.54 -10.93 12.90 -129.95 -1.68 -12.61 16 18 C -0.21 -3.47 5.34 -10.79 -0.06 -3.53 16 19 C -0.16 -2.22 10.18 30.59 0.31 -1.90 16 20 C -0.14 -1.72 10.16 30.60 0.31 -1.41 16 21 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 22 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 23 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 24 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 25 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.06 2.35 8.13 -2.39 -0.02 2.33 16 27 H 0.06 2.32 8.13 -2.39 -0.02 2.30 16 28 H 0.39 6.40 8.79 -74.06 -0.65 5.75 16 29 H 0.10 1.88 8.11 -2.39 -0.02 1.86 16 30 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.11 1.34 8.05 -2.39 -0.02 1.32 16 32 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -67.90 292.66 3.61 -64.29 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.44 Total: 8.99 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 2.60 Total: -19.33 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.28 Total: -56.62 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -1.75 Total: -43.13 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -67.90 3.61 -64.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730879708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.807 kcal (2) G-P(sol) polarization free energy of solvation -67.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds