Wall clock time and date at job start Thu Apr 9 2020 11:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99942 * 2 1 4 4 H 1.48497 * 109.46905 * 239.99918 * 3 2 1 5 5 H 1.48494 * 109.47303 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46641 * 120.00003 * 3 2 1 7 7 C 1.37878 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99886 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47080 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47372 * 179.97438 * 10 9 7 12 12 C 1.34230 * 117.00173 * 180.02562 * 11 10 9 13 13 O 1.20818 * 119.99983 * 0.27497 * 12 11 10 14 14 C 1.50706 * 119.99763 * 179.97438 * 12 11 10 15 15 H 1.09000 * 115.55066 * 325.72207 * 14 12 11 16 16 C 1.53002 * 117.49721 * 111.39183 * 14 12 11 17 17 C 1.52999 * 59.99973 * 107.48483 * 16 14 12 18 18 H 1.08998 * 117.50011 * 252.50757 * 17 16 14 19 19 C 1.50704 * 117.49765 * 107.48802 * 17 16 14 20 20 O 1.20829 * 120.00108 * 291.37761 * 19 17 16 21 21 O 1.34227 * 119.99998 * 111.37609 * 19 17 16 22 22 H 0.96996 * 119.99888 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47617 * 59.99861 * 9 7 2 24 24 H 1.08998 * 109.47222 * 299.99682 * 9 7 2 25 25 H 1.09003 * 109.46945 * 60.00328 * 10 9 7 26 26 H 1.08998 * 109.47020 * 300.00034 * 10 9 7 27 27 H 1.08995 * 117.50025 * 214.97710 * 16 14 12 28 28 H 1.08998 * 117.49666 * 359.97438 * 16 14 12 29 29 H 0.96703 * 116.99923 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5193 -4.9196 0.0011 12 6 2.2503 -6.0453 0.0018 13 8 3.4568 -5.9821 0.0068 14 6 1.5661 -7.3881 0.0030 15 1 0.6288 -7.4376 0.5572 16 6 1.6860 -8.2432 -1.2601 17 6 2.4546 -8.6336 0.0039 18 1 3.5340 -8.4819 0.0036 19 6 1.9671 -9.8355 0.7714 20 8 0.9104 -9.7914 1.3557 21 8 2.7067 -10.9551 0.8058 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8719 -3.6044 0.8906 26 1 2.8719 -3.6044 -0.8894 27 1 0.8278 -8.8556 -1.5366 28 1 2.2594 -7.8344 -2.0920 29 1 2.3529 -11.6997 1.3112 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739072014.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:24 Heat of formation + Delta-G solvation = -163.526603 kcal Electronic energy + Delta-G solvation = -14940.156415 eV Core-core repulsion = 12022.111311 eV Total energy + Delta-G solvation = -2918.045103 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.088 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.93551 -39.95783 -37.33657 -36.32592 -35.63256 -33.36339 -30.36143 -26.71424 -25.26213 -24.04348 -21.46902 -20.88294 -19.95925 -18.70981 -17.79261 -16.79182 -16.21022 -16.00661 -15.98348 -15.78392 -14.55097 -14.31675 -13.56914 -13.35068 -12.64158 -12.40395 -12.36924 -11.92121 -11.33050 -11.20550 -11.10419 -11.03105 -10.87690 -10.76753 -10.70227 -10.31342 -9.69448 -9.65819 -9.33435 -8.45439 -6.11486 -4.16314 1.69981 2.21868 2.45943 3.16136 3.29403 3.33627 3.37014 3.46848 4.15687 4.36131 4.39308 4.76929 4.95839 5.12002 5.24877 5.28670 5.56145 5.65710 6.03086 6.04734 6.14428 6.59392 6.88908 7.53029 7.56923 7.60042 7.84081 8.10518 8.22199 8.88931 9.48090 10.99886 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.075447 B = 0.004099 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.031120 B = 6828.588317 C = 6975.454762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.348 6.348 12 C 0.487 3.513 13 O -0.515 6.515 14 C -0.129 4.129 15 H 0.151 0.849 16 C -0.111 4.111 17 C -0.143 4.143 18 H 0.152 0.848 19 C 0.514 3.486 20 O -0.510 6.510 21 O -0.509 6.509 22 H 0.264 0.736 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.250 -18.785 -1.244 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.002 3.998 11 O -0.263 6.263 12 C 0.330 3.670 13 O -0.404 6.404 14 C -0.149 4.149 15 H 0.169 0.831 16 C -0.148 4.148 17 C -0.161 4.161 18 H 0.169 0.831 19 C 0.356 3.644 20 O -0.398 6.398 21 O -0.321 6.321 22 H 0.074 0.926 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 3.304 -18.236 -1.301 18.579 hybrid contribution 0.347 0.488 0.473 0.763 sum 3.651 -17.749 -0.828 18.139 Atomic orbital electron populations 1.69966 1.06088 1.27140 1.49568 1.24991 0.94936 0.99408 0.94832 0.86514 0.79466 0.82429 0.78775 1.20062 1.21102 1.20070 1.20931 0.93140 0.90085 1.52467 0.92281 1.19179 0.94188 0.88919 0.98998 1.23727 0.96466 0.78456 1.01107 1.86516 1.42164 1.15560 1.82095 1.22144 0.85742 0.86271 0.72838 1.90639 1.15527 1.88188 1.46091 1.21803 1.01820 0.86305 1.04925 0.83145 1.23167 1.01726 0.99475 0.90467 1.21700 1.01723 0.90612 1.02113 0.83061 1.22126 0.81363 0.83132 0.77791 1.90756 1.23414 1.83046 1.42581 1.84498 1.52887 1.24330 1.70381 0.92621 0.95262 0.95260 0.92128 0.92109 0.86341 0.86089 0.72778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 15 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 15 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 15 10 C 0.07 1.65 5.40 37.16 0.20 1.85 15 11 O -0.35 -6.92 10.22 -39.26 -0.40 -7.32 15 12 C 0.49 8.31 7.74 36.01 0.28 8.59 15 13 O -0.51 -9.76 16.01 -18.74 -0.30 -10.06 15 14 C -0.13 -1.64 5.81 -91.77 -0.53 -2.17 15 15 H 0.15 1.87 7.67 -51.93 -0.40 1.47 15 16 C -0.11 -1.03 9.94 -26.73 -0.27 -1.30 15 17 C -0.14 -1.51 5.81 -91.77 -0.53 -2.04 15 18 H 0.15 1.60 7.67 -51.93 -0.40 1.20 15 19 C 0.51 5.36 8.11 36.01 0.29 5.65 15 20 O -0.51 -6.76 17.02 -18.75 -0.32 -7.08 15 21 O -0.51 -3.88 13.42 -39.25 -0.53 -4.40 15 22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 23 H 0.03 0.80 8.14 -51.93 -0.42 0.37 15 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.06 1.33 8.13 -51.93 -0.42 0.90 15 26 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 27 H 0.12 0.87 8.14 -51.93 -0.42 0.44 15 28 H 0.12 1.03 8.14 -51.93 -0.42 0.60 15 29 H 0.41 1.28 9.10 45.56 0.41 1.70 15 LS Contribution 272.88 15.07 4.11 4.11 Total: -1.00 -33.25 272.88 -5.30 -38.55 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -2.46 Total: -2.11 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -1.12 Total: -2.43 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.74 Total: -25.58 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -1.55 Total: -28.86 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -33.25 -5.30 -38.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739072014.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.977 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds