Wall clock time and date at job start Thu Apr 9 2020 12:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99864 * 2 1 4 4 C 1.53004 * 109.46806 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46809 * 185.40553 * 4 3 2 6 6 C 1.50694 * 112.85319 * 58.69996 * 5 4 3 7 7 O 1.21210 * 120.00260 * 234.38364 * 6 5 4 8 8 O 1.34313 * 119.99903 * 54.37632 * 6 5 4 9 9 C 1.34920 * 116.99927 * 180.02562 * 8 6 5 10 10 H 1.07992 * 120.00049 * 359.72392 * 9 8 6 11 11 C 1.38756 * 119.99612 * 180.02562 * 9 8 6 12 12 N 1.31437 * 120.00431 * 359.71890 * 11 9 8 13 13 Si 1.86800 * 119.99690 * 179.72344 * 11 9 8 14 14 H 1.48502 * 109.47363 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47140 * 119.99604 * 13 11 9 16 16 H 1.48495 * 109.47096 * 239.99453 * 13 11 9 17 17 C 1.53783 * 113.68695 * 189.96834 * 5 4 3 18 18 C 1.53781 * 87.08090 * 89.12748 * 17 5 4 19 19 C 1.53775 * 87.08233 * 25.43128 * 18 17 5 20 20 H 1.09000 * 109.46803 * 299.99251 * 1 2 3 21 21 H 1.09002 * 109.47281 * 59.99540 * 1 2 3 22 22 H 1.08993 * 109.47270 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46834 * 60.00806 * 3 2 1 24 24 H 1.09001 * 109.47517 * 300.00299 * 3 2 1 25 25 H 1.09000 * 109.46944 * 65.40653 * 4 3 2 26 26 H 1.08999 * 109.47457 * 305.40240 * 4 3 2 27 27 H 0.96996 * 120.00428 * 180.02562 * 12 11 9 28 28 H 1.09001 * 113.60998 * 203.67492 * 17 5 4 29 29 H 1.08995 * 113.61436 * 334.57668 * 17 5 4 30 30 H 1.09000 * 113.61493 * 270.87800 * 18 17 5 31 31 H 1.09005 * 113.61564 * 139.97879 * 18 17 5 32 32 H 1.09001 * 113.61693 * 220.01807 * 19 18 17 33 33 H 1.09006 * 113.61914 * 89.11796 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1573 2.5760 0.1353 6 6 3.7276 3.2889 1.3915 7 8 3.2348 4.3941 1.3227 8 8 3.8907 2.6994 2.5873 9 6 3.4845 3.3917 3.6718 10 1 3.0552 4.3757 3.5547 11 6 3.6242 2.8418 4.9381 12 7 4.1470 1.6444 5.0807 13 14 3.0690 3.8034 6.4403 14 1 2.5195 5.1152 6.0130 15 1 2.0194 3.0369 7.1586 16 1 4.2272 4.0229 7.3434 17 6 5.6773 2.5986 -0.0967 18 6 5.3675 2.8244 -1.5860 19 6 4.0300 3.4343 -1.1344 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.6886 1.8462 0.8901 24 1 1.6885 1.8464 -0.8899 25 1 3.8634 0.7297 -0.9353 26 1 3.8510 0.5623 0.8367 27 1 4.2443 1.2599 5.9658 28 1 6.1788 3.4422 0.3777 29 1 6.1646 1.6454 0.1082 30 1 5.2566 1.9007 -2.1539 31 1 6.0337 3.5407 -2.0669 32 1 3.1873 3.1557 -1.7671 33 1 4.0810 4.5063 -0.9437 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761485607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:10 Heat of formation + Delta-G solvation = -137.661854 kcal Electronic energy + Delta-G solvation = -16480.644182 eV Core-core repulsion = 13699.553753 eV Total energy + Delta-G solvation = -2781.090429 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.74519 -39.62012 -38.62863 -37.01668 -34.32087 -32.55397 -28.53649 -27.42689 -26.70811 -26.13385 -23.84775 -22.47361 -19.91147 -19.61550 -18.31901 -17.52136 -17.34419 -16.80989 -16.35367 -16.27643 -16.00039 -15.63533 -14.99074 -14.33799 -13.85215 -13.63002 -13.38724 -13.33870 -13.08012 -12.60967 -12.44209 -12.32125 -12.21957 -12.14861 -12.02052 -11.95031 -11.41237 -11.20659 -10.76000 -10.71447 -10.67492 -8.55471 -6.35599 1.26565 1.30124 1.48646 1.62024 2.09465 2.61663 2.82655 2.94491 3.44939 3.62954 3.83447 3.91702 4.06534 4.17204 4.34745 4.46707 4.47218 4.58224 4.71850 4.76383 4.78615 4.81302 4.94199 4.99344 5.08306 5.12018 5.20226 5.26367 5.51748 5.81713 6.12676 6.65643 6.89374 7.78798 8.65239 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.021834 B = 0.009196 C = 0.007367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.100556 B = 3044.147972 C = 3800.067379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.068 3.932 4 C -0.080 4.080 5 C -0.079 4.079 6 C 0.408 3.592 7 O -0.587 6.587 8 O -0.239 6.239 9 C -0.423 4.423 10 H 0.077 0.923 11 C -0.003 4.003 12 N -0.900 5.900 13 Si 1.014 2.986 14 H -0.266 1.266 15 H -0.259 1.259 16 H -0.258 1.258 17 C -0.123 4.123 18 C -0.111 4.111 19 C -0.115 4.115 20 H 0.029 0.971 21 H 0.060 0.940 22 H 0.108 0.892 23 H 0.009 0.991 24 H 0.073 0.927 25 H 0.119 0.881 26 H 0.059 0.941 27 H 0.278 0.722 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 -2.218 -11.806 12.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C -0.009 4.009 4 C -0.117 4.117 5 C -0.080 4.080 6 C 0.256 3.744 7 O -0.485 6.485 8 O -0.147 6.147 9 C -0.499 4.499 10 H 0.094 0.906 11 C -0.204 4.204 12 N -0.537 5.537 13 Si 0.833 3.167 14 H -0.190 1.190 15 H -0.184 1.184 16 H -0.182 1.182 17 C -0.161 4.161 18 C -0.148 4.148 19 C -0.152 4.152 20 H 0.048 0.952 21 H 0.079 0.921 22 H 0.126 0.874 23 H 0.027 0.973 24 H 0.091 0.909 25 H 0.137 0.863 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.329 -2.271 -11.646 11.940 hybrid contribution -0.604 0.840 1.273 1.640 sum -1.933 -1.431 -10.373 10.648 Atomic orbital electron populations 1.22960 0.79571 1.04180 1.00471 1.87792 1.21558 1.27879 1.95497 1.22435 0.94475 0.84491 0.99461 1.21170 0.92662 0.93297 1.04613 1.21959 1.00103 0.96482 0.89473 1.24343 0.77935 0.85430 0.86710 1.90485 1.46604 1.23263 1.88166 1.83932 1.70022 1.46454 1.14307 1.21418 1.43356 1.01653 0.83495 0.90567 1.26511 0.95722 0.97282 1.00868 1.70084 1.41970 1.16262 1.25389 0.84627 0.78873 0.77706 0.75514 1.18987 1.18359 1.18185 1.22954 0.91335 1.03054 0.98734 1.22816 0.95397 1.02560 0.93994 1.22958 1.00404 0.98953 0.92869 0.95210 0.92134 0.87393 0.97287 0.90879 0.86261 0.92244 0.91235 0.91321 0.89375 0.86850 0.88907 0.89081 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 11.01 113.37 1.25 1.88 16 2 O -0.41 -13.98 10.70 -148.98 -1.59 -15.57 16 3 C 0.07 2.42 5.67 71.98 0.41 2.83 16 4 C -0.08 -2.76 4.90 30.60 0.15 -2.61 16 5 C -0.08 -2.96 0.91 -52.40 -0.05 -3.01 16 6 C 0.41 21.37 5.74 71.23 0.41 21.78 16 7 O -0.59 -33.50 15.19 20.78 0.32 -33.19 16 8 O -0.24 -14.68 9.68 14.84 0.14 -14.54 16 9 C -0.42 -26.72 9.65 67.94 0.66 -26.07 16 10 H 0.08 4.91 6.86 -2.91 -0.02 4.89 16 11 C 0.00 -0.20 5.49 84.88 0.47 0.26 16 12 N -0.90 -54.69 13.67 21.62 0.30 -54.40 16 13 Si 1.01 44.83 29.55 68.60 2.03 46.85 16 14 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 15 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 16 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 17 C -0.12 -3.85 7.22 31.12 0.22 -3.62 16 18 C -0.11 -2.44 7.73 31.12 0.24 -2.20 16 19 C -0.11 -3.37 6.83 31.12 0.21 -3.16 16 20 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 21 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.01 0.39 7.18 -2.39 -0.02 0.37 16 24 H 0.07 2.18 7.35 -2.39 -0.02 2.16 16 25 H 0.12 3.06 7.30 -2.39 -0.02 3.04 16 26 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 28 H 0.07 2.36 8.09 -2.39 -0.02 2.34 16 29 H 0.09 2.54 8.10 -2.39 -0.02 2.52 16 30 H 0.11 1.88 7.60 -2.39 -0.02 1.86 16 31 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.09 2.26 7.28 -2.39 -0.02 2.25 16 33 H 0.07 2.49 7.51 -2.38 -0.02 2.47 16 Total: -1.00 -76.96 281.54 6.24 -70.72 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 1.09 Total: 14.04 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 3.97 Total: -13.91 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.30 Total: -54.40 kcal Atomic # 8 Polarization: -62.16 SS G_CDS: -1.14 Total: -63.30 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -76.96 6.24 -70.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761485607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.945 kcal (2) G-P(sol) polarization free energy of solvation -76.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds