Wall clock time and date at job start Thu Apr 9 2020 11:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86807 * 119.99241 * 2 1 4 4 H 1.48500 * 109.46896 * 240.00071 * 3 2 1 5 5 H 1.48498 * 109.47327 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46854 * 120.00430 * 3 2 1 7 7 C 1.38745 * 120.00515 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00256 * 179.97438 * 7 2 1 9 9 O 1.34925 * 120.00195 * 359.97438 * 7 2 1 10 10 C 1.34309 * 117.00165 * 179.97438 * 9 7 2 11 11 O 1.21213 * 120.00005 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00000 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.46959 * 305.00034 * 12 10 9 14 14 O 1.42898 * 109.46964 * 185.00063 * 12 10 9 15 15 C 1.52997 * 109.47078 * 64.99946 * 12 10 9 16 16 C 1.52992 * 109.47482 * 299.99990 * 15 12 10 17 17 C 1.52997 * 109.47482 * 179.97438 * 16 15 12 18 18 C 1.53002 * 109.47143 * 60.00181 * 17 16 15 19 19 C 1.53000 * 109.46911 * 299.99808 * 18 17 16 20 20 C 1.52999 * 109.47317 * 179.97438 * 15 12 10 21 21 H 0.96995 * 120.00867 * 359.97438 * 1 2 3 22 22 H 0.96698 * 113.99898 * 299.99550 * 14 12 10 23 23 H 1.09002 * 109.47153 * 60.00207 * 15 12 10 24 24 H 1.09002 * 109.47103 * 300.00247 * 16 15 12 25 25 H 1.09001 * 109.47066 * 60.00169 * 16 15 12 26 26 H 1.09002 * 109.47153 * 300.00216 * 17 16 15 27 27 H 1.09004 * 109.47261 * 180.02562 * 17 16 15 28 28 H 1.09004 * 109.47059 * 180.02562 * 18 17 16 29 29 H 1.08992 * 109.47060 * 59.99979 * 18 17 16 30 30 H 1.09002 * 109.47131 * 300.00452 * 19 18 17 31 31 H 1.09001 * 109.47194 * 179.97438 * 19 18 17 32 32 H 1.09001 * 109.47362 * 300.00732 * 20 15 12 33 33 H 1.09002 * 109.46716 * 60.00091 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6179 0.0000 4 1 3.1020 1.6967 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1020 1.6966 1.2124 7 6 2.0083 -1.2015 0.0005 8 1 3.0883 -1.2015 0.0001 9 8 1.3338 -2.3701 0.0016 10 6 2.0654 -3.4964 0.0015 11 8 3.2759 -3.4329 0.0010 12 6 1.3814 -4.8392 0.0021 13 1 0.6916 -4.8952 0.8442 14 8 2.3611 -5.8728 0.1193 15 6 0.6062 -5.0172 -1.3049 16 6 -0.4428 -3.9106 -1.4305 17 6 -1.2176 -4.0882 -2.7378 18 6 -1.9121 -5.4515 -2.7379 19 6 -0.8631 -6.5582 -2.6124 20 6 -0.0878 -6.3807 -1.3047 21 1 -0.4851 0.8399 0.0004 22 1 3.0096 -5.8832 -0.5979 23 1 1.2960 -4.9612 -2.1470 24 1 -1.1326 -3.9666 -0.5884 25 1 0.0519 -2.9393 -1.4309 26 1 -0.5275 -4.0319 -3.5797 27 1 -1.9647 -3.2995 -2.8274 28 1 -2.4637 -5.5782 -3.6694 29 1 -2.6021 -5.5078 -1.8961 30 1 -0.1730 -6.5018 -3.4542 31 1 -1.3578 -7.5295 -2.6120 32 1 0.6598 -7.1689 -1.2154 33 1 -0.7776 -6.4372 -0.4625 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782370208.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:07 Heat of formation + Delta-G solvation = -160.779486 kcal Electronic energy + Delta-G solvation = -16670.250755 eV Core-core repulsion = 13888.157869 eV Total energy + Delta-G solvation = -2782.092885 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.67568 -37.99631 -36.26319 -34.72264 -32.22384 -31.23680 -30.36068 -26.71703 -24.88208 -22.30105 -21.64930 -20.09330 -19.53910 -17.76750 -17.15897 -16.10995 -15.47820 -14.70347 -14.36133 -14.23953 -14.08659 -13.80818 -13.33335 -12.86103 -12.38089 -12.03097 -11.81962 -11.72858 -11.39423 -11.17892 -10.88188 -10.80778 -10.57131 -10.50182 -10.46174 -10.08640 -9.95089 -9.65747 -9.47434 -8.79571 -8.57983 -6.43135 -4.10653 3.10174 3.17785 3.21246 3.45483 3.90309 4.47287 4.66192 4.90666 5.00808 5.11469 5.15583 5.40833 5.52574 5.57930 5.74745 5.84268 5.87943 5.91725 5.97832 6.18587 6.28888 6.41208 6.43253 6.44346 6.58152 6.65576 6.85642 7.22609 7.37483 7.86523 7.93637 8.67406 9.05890 9.80861 10.73755 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.030497 B = 0.008566 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.891112 B = 3268.066334 C = 4007.167383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.387 4.387 8 H 0.093 0.907 9 O -0.203 6.203 10 C 0.367 3.633 11 O -0.553 6.553 12 C 0.130 3.870 13 H 0.121 0.879 14 O -0.541 6.541 15 C -0.107 4.107 16 C -0.124 4.124 17 C -0.114 4.114 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.107 4.107 21 H 0.270 0.730 22 H 0.378 0.622 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 -8.838 -4.780 10.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.159 4.159 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.463 4.463 8 H 0.111 0.889 9 O -0.110 6.110 10 C 0.213 3.787 11 O -0.451 6.451 12 C 0.069 3.931 13 H 0.139 0.861 14 O -0.347 6.347 15 C -0.126 4.126 16 C -0.162 4.162 17 C -0.152 4.152 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.145 4.145 21 H 0.080 0.920 22 H 0.227 0.773 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.986 -8.780 -4.239 10.533 hybrid contribution 0.762 1.010 -0.456 1.345 sum -3.223 -7.770 -4.695 9.634 Atomic orbital electron populations 1.69963 1.05845 1.27787 1.46219 1.25279 0.95793 0.98707 0.96136 0.85785 0.78702 0.79627 0.79333 1.19549 1.20365 1.19534 1.21180 0.92399 0.80100 1.52601 0.88929 1.83929 1.38956 1.13228 1.74896 1.24148 0.87268 0.88208 0.79093 1.90559 1.15740 1.87877 1.50912 1.21358 0.88978 0.82994 0.99758 0.86142 1.86518 1.43974 1.50953 1.53207 1.21715 0.97908 0.96498 0.96507 1.21742 0.97238 1.00109 0.97063 1.21482 0.99198 0.96292 0.98216 1.21574 0.97740 0.95353 1.01090 1.21530 0.97919 0.98101 0.97903 1.21509 0.99020 0.96340 0.97602 0.92024 0.77347 0.91098 0.91836 0.87866 0.92579 0.91956 0.92728 0.92123 0.92308 0.92448 0.91616 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.37 13.67 55.48 0.76 -23.61 16 2 C 0.05 1.25 5.49 -17.53 -0.10 1.15 16 3 Si 0.94 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.39 -11.24 9.65 30.92 0.30 -10.94 16 8 H 0.09 2.75 6.86 -52.49 -0.36 2.39 16 9 O -0.20 -5.57 6.97 -20.71 -0.14 -5.72 16 10 C 0.37 9.01 7.08 36.01 0.25 9.26 16 11 O -0.55 -15.05 15.56 -25.77 -0.40 -15.45 16 12 C 0.13 2.45 3.09 -27.88 -0.09 2.36 16 13 H 0.12 2.18 8.14 -51.93 -0.42 1.76 16 14 O -0.54 -9.57 12.32 -55.10 -0.68 -10.25 16 15 C -0.11 -1.74 1.95 -90.63 -0.18 -1.92 16 16 C -0.12 -2.22 4.68 -26.74 -0.13 -2.35 16 17 C -0.11 -1.72 5.92 -26.73 -0.16 -1.88 16 18 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 19 C -0.12 -1.39 5.92 -26.70 -0.16 -1.54 16 20 C -0.11 -1.43 5.06 -26.70 -0.14 -1.56 16 21 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 22 H 0.38 5.81 8.79 45.56 0.40 6.21 16 23 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.10 2.32 5.54 -51.93 -0.29 2.03 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 272.75 15.07 4.11 4.11 Total: -1.00 -31.40 272.75 -5.93 -37.33 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -4.01 Total: 6.55 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -0.54 Total: -9.07 kcal Atomic # 7 Polarization: -24.37 SS G_CDS: 0.76 Total: -23.61 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -1.22 Total: -31.41 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.40 -5.93 -37.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782370208.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.452 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds