Wall clock time and date at job start Thu Apr 9 2020 11:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.83012 * 2 1 4 4 C 1.54385 * 109.83244 * 239.10884 * 2 1 3 5 5 C 1.55299 * 102.25665 * 219.04266 * 4 2 1 6 6 H 1.09006 * 111.12408 * 276.17475 * 5 4 2 7 7 C 1.50697 * 111.12895 * 152.05113 * 5 4 2 8 8 O 1.20833 * 119.99747 * 0.02562 * 7 5 4 9 9 O 1.34230 * 120.00262 * 179.72117 * 7 5 4 10 10 C 1.45202 * 116.99836 * 180.27336 * 9 7 5 11 11 C 1.52994 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47473 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99561 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00335 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99823 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 120.00206 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46956 * 89.99708 * 16 14 12 18 18 H 1.48494 * 109.47327 * 209.99982 * 16 14 12 19 19 H 1.48501 * 109.47241 * 330.00070 * 16 14 12 20 20 C 1.54949 * 100.94175 * 34.13399 * 5 4 2 21 21 O 1.43247 * 109.90476 * 120.93475 * 2 1 3 22 22 H 1.08998 * 109.47695 * 180.88316 * 1 2 3 23 23 H 1.08995 * 109.47177 * 300.89188 * 1 2 3 24 24 H 1.09007 * 109.46980 * 60.88477 * 1 2 3 25 25 H 1.09004 * 110.84324 * 100.85252 * 4 2 1 26 26 H 1.08999 * 111.02100 * 337.31598 * 4 2 1 27 27 H 1.08998 * 109.47630 * 300.00638 * 10 9 7 28 28 H 1.09004 * 109.46770 * 60.01042 * 10 9 7 29 29 H 1.08997 * 109.47687 * 300.00275 * 11 10 9 30 30 H 1.09002 * 109.47633 * 60.00402 * 11 10 9 31 31 H 0.97002 * 119.99857 * 179.97438 * 15 14 12 32 32 H 1.08994 * 110.30875 * 82.47299 * 20 5 4 33 33 H 1.09000 * 110.30979 * 204.64367 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0537 -0.7456 -1.2463 5 6 3.2743 -1.5199 -0.6785 6 1 4.1628 -0.8888 -0.6535 7 6 3.5300 -2.7813 -1.4623 8 8 2.8196 -3.0659 -2.3974 9 8 4.5506 -3.5855 -1.1256 10 6 4.7410 -4.7802 -1.9286 11 6 5.9420 -5.5654 -1.3977 12 6 6.1400 -6.8051 -2.2314 13 1 5.4759 -7.0120 -3.0576 14 6 7.1690 -7.6751 -1.9395 15 7 7.3420 -8.7567 -2.6674 16 14 8.3180 -7.3170 -0.5110 17 1 7.7766 -7.9341 0.7265 18 1 9.6596 -7.8837 -0.8007 19 1 8.4312 -5.8483 -0.3229 20 6 2.7775 -1.8431 0.7532 21 8 2.0176 -0.6924 1.1553 22 1 -0.3634 -1.0275 0.0158 23 1 -0.3633 0.5276 0.8818 24 1 -0.3633 0.5001 -0.8979 25 1 2.3657 -0.0410 -2.0172 26 1 1.3033 -1.4347 -1.6338 27 1 3.8474 -5.4019 -1.8727 28 1 4.9217 -4.4962 -2.9653 29 1 6.8357 -4.9440 -1.4533 30 1 5.7610 -5.8495 -0.3611 31 1 8.0662 -9.3686 -2.4622 32 1 2.1440 -2.7300 0.7425 33 1 3.6245 -1.9902 1.4234 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784269374.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:13 Heat of formation + Delta-G solvation = -148.787260 kcal Electronic energy + Delta-G solvation = -15690.997615 eV Core-core repulsion = 12909.424752 eV Total energy + Delta-G solvation = -2781.572863 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.64883 -39.16707 -36.31694 -33.37752 -32.65016 -32.03015 -30.70398 -26.50943 -25.52186 -23.60326 -21.34750 -20.75320 -20.23590 -17.83340 -17.16383 -16.73204 -16.22312 -15.96834 -15.21550 -14.38245 -14.25956 -14.02275 -13.66238 -13.16649 -12.84731 -12.75229 -12.42422 -12.14742 -11.67462 -11.44924 -11.33109 -11.25318 -11.11694 -10.74462 -10.59874 -10.03547 -9.95496 -9.79410 -9.76367 -9.38587 -8.65416 -6.15907 -4.17536 2.32821 2.87567 3.25817 3.33358 3.37309 3.62017 4.06053 4.35893 4.53323 4.61673 4.79847 4.88984 5.00260 5.17605 5.17691 5.38874 5.44131 5.48207 5.60977 5.71343 5.83912 5.89757 5.90868 5.97989 6.39224 6.69378 6.73749 7.12635 7.17137 7.58581 8.00298 8.36205 8.85392 9.43448 10.96632 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.056902 B = 0.004860 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.954696 B = 5759.396904 C = 6083.707318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.075 3.925 3 H 0.084 0.916 4 C -0.137 4.137 5 C -0.123 4.123 6 H 0.122 0.878 7 C 0.468 3.532 8 O -0.509 6.509 9 O -0.358 6.358 10 C 0.081 3.919 11 C -0.009 4.009 12 C -0.529 4.529 13 H 0.075 0.925 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.882 3.118 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.263 1.263 20 C 0.068 3.932 21 O -0.375 6.375 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.024 0.976 31 H 0.266 0.734 32 H 0.067 0.933 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 17.477 6.217 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.018 3.982 3 H 0.102 0.898 4 C -0.175 4.175 5 C -0.142 4.142 6 H 0.140 0.860 7 C 0.310 3.690 8 O -0.398 6.398 9 O -0.274 6.274 10 C 0.009 3.991 11 C -0.047 4.047 12 C -0.567 4.567 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.708 3.292 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.188 1.188 20 C -0.009 4.009 21 O -0.294 6.294 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.605 17.239 6.106 20.657 hybrid contribution 0.699 -0.173 0.234 0.757 sum -8.906 17.066 6.340 20.267 Atomic orbital electron populations 1.22144 0.94613 1.02912 1.02370 1.22770 0.94689 0.96350 0.84385 0.89822 1.23194 0.96606 0.99598 0.98066 1.22724 1.01557 0.93561 0.96391 0.85962 1.22967 0.78571 0.84686 0.82810 1.90651 1.47176 1.73348 1.28586 1.86491 1.47360 1.35630 1.57950 1.23433 1.00926 0.80968 0.93762 1.19628 0.92313 0.95186 0.97543 1.20835 1.15491 1.04424 1.15950 0.90657 1.24936 0.97088 0.94548 0.96411 1.69894 1.31862 1.12183 1.39496 0.86744 0.80295 0.79346 0.82781 1.20008 1.21133 1.18769 1.23276 0.95708 0.89292 0.92618 1.88456 1.70639 1.40343 1.29980 0.91978 0.91819 0.91334 0.89200 0.88640 0.91615 0.91591 0.95351 0.95752 0.92389 0.91473 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.45 37.15 0.35 -0.98 16 2 C 0.08 0.71 4.15 -26.01 -0.11 0.60 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 4 C -0.14 -1.40 5.70 -24.79 -0.14 -1.54 16 5 C -0.12 -1.44 3.60 -89.53 -0.32 -1.76 16 6 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 7 C 0.47 7.56 7.28 36.00 0.26 7.82 16 8 O -0.51 -9.52 15.45 -18.76 -0.29 -9.81 16 9 O -0.36 -6.58 10.22 -39.26 -0.40 -6.98 16 10 C 0.08 1.72 5.40 37.15 0.20 1.92 16 11 C -0.01 -0.22 4.42 -27.89 -0.12 -0.34 16 12 C -0.53 -14.95 9.66 -34.44 -0.33 -15.28 16 13 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 14 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 16 Si 0.88 21.24 27.47 -169.99 -4.67 16.58 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 20 C 0.07 0.77 7.25 38.19 0.28 1.04 16 21 O -0.37 -4.35 11.02 -35.23 -0.39 -4.74 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 25 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.10 1.10 7.07 -51.93 -0.37 0.73 16 27 H 0.07 1.39 8.13 -51.93 -0.42 0.97 16 28 H 0.07 1.40 8.13 -51.93 -0.42 0.98 16 29 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 30 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 31 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.07 0.79 8.02 -51.93 -0.42 0.37 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 280.67 15.07 4.23 4.23 Total: -1.00 -31.39 280.67 -5.72 -37.11 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -4.94 Total: -3.40 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -0.03 Total: -6.54 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.77 Total: -26.44 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -1.08 Total: -21.53 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.39 -5.72 -37.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784269374.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.679 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds