Wall clock time and date at job start Thu Apr 9 2020 11:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.86955 * 2 1 4 4 C 1.54098 * 109.87569 * 238.99326 * 2 1 3 5 5 C 1.54805 * 104.18730 * 238.39173 * 4 2 1 6 6 H 1.09007 * 110.90773 * 97.35831 * 5 4 2 7 7 C 1.50700 * 110.91046 * 220.92223 * 5 4 2 8 8 O 1.20822 * 119.99958 * 357.07356 * 7 5 4 9 9 O 1.34234 * 120.00068 * 177.07547 * 7 5 4 10 10 C 1.45196 * 116.99938 * 179.97438 * 9 7 5 11 11 C 1.52998 * 109.47070 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47221 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99956 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00171 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00377 * 179.97438 * 14 12 11 16 16 Si 1.86810 * 119.99898 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47093 * 90.00118 * 16 14 12 18 18 H 1.48500 * 109.46823 * 210.00246 * 16 14 12 19 19 H 1.48499 * 109.46973 * 329.99936 * 16 14 12 20 20 C 1.54994 * 102.12715 * 339.14028 * 5 4 2 21 21 O 1.43736 * 110.00402 * 121.08497 * 2 1 3 22 22 H 1.09000 * 109.47322 * 181.00864 * 1 2 3 23 23 H 1.09006 * 109.47073 * 301.00494 * 1 2 3 24 24 H 1.09000 * 109.47497 * 61.00360 * 1 2 3 25 25 H 1.09003 * 110.48614 * 119.71862 * 4 2 1 26 26 H 1.08991 * 110.60691 * 357.12910 * 4 2 1 27 27 H 1.08996 * 109.47465 * 299.99911 * 10 9 7 28 28 H 1.08999 * 109.47008 * 59.99921 * 10 9 7 29 29 H 1.08998 * 109.47592 * 300.00297 * 11 10 9 30 30 H 1.08999 * 109.47084 * 60.00195 * 11 10 9 31 31 H 0.96994 * 120.00157 * 180.02562 * 15 14 12 32 32 H 1.09001 * 110.62235 * 155.50479 * 20 5 4 33 33 H 1.08995 * 110.61725 * 278.50343 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0539 -0.7465 -1.2421 5 6 2.9226 -1.8881 -0.6603 6 1 2.3593 -2.8201 -0.6129 7 6 4.1851 -2.0662 -1.4637 8 8 4.3729 -1.3950 -2.4506 9 8 5.1010 -2.9706 -1.0829 10 6 6.2924 -3.0884 -1.9045 11 6 7.2127 -4.1605 -1.3176 12 6 8.4495 -4.2823 -2.1700 13 1 8.5671 -3.6579 -3.0432 14 6 9.4304 -5.1917 -1.8356 15 7 10.5095 -5.2985 -2.5797 16 14 9.2266 -6.2724 -0.3255 17 1 8.5375 -7.5312 -0.7070 18 1 10.5626 -6.5909 0.2391 19 1 8.4178 -5.5539 0.6918 20 6 3.2418 -1.3618 0.7622 21 8 2.0217 -0.6973 1.1567 22 1 -0.3634 -1.0275 0.0181 23 1 -0.3633 0.5294 0.8809 24 1 -0.3634 0.4982 -0.8988 25 1 2.6596 -0.0826 -1.8589 26 1 1.2261 -1.1546 -1.8219 27 1 6.0081 -3.3687 -2.9187 28 1 6.8156 -2.1324 -1.9250 29 1 7.4970 -3.8798 -0.3035 30 1 6.6897 -5.1166 -1.2968 31 1 11.1994 -5.9385 -2.3447 32 1 3.4647 -2.1887 1.4365 33 1 4.0711 -0.6551 0.7328 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784269377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:17 Heat of formation + Delta-G solvation = -148.329801 kcal Electronic energy + Delta-G solvation = -15683.981165 eV Core-core repulsion = 12902.428138 eV Total energy + Delta-G solvation = -2781.553026 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.64634 -39.12929 -36.31997 -33.37505 -32.64276 -32.04780 -30.69741 -26.39694 -25.44874 -23.63171 -21.56423 -20.73218 -20.15538 -17.92373 -16.97022 -16.58128 -16.21311 -15.69057 -15.48312 -14.89382 -14.23521 -13.96656 -13.39832 -13.16415 -12.77769 -12.63066 -12.48358 -12.24690 -11.63472 -11.54455 -11.27781 -11.20982 -11.01827 -10.74112 -10.57108 -10.02716 -9.95462 -9.94650 -9.76243 -9.38521 -8.65395 -6.15846 -4.17490 2.34626 2.89342 3.25815 3.33384 3.37341 3.67397 4.13471 4.35888 4.46953 4.69551 4.79408 4.90168 5.01318 5.17624 5.18832 5.39435 5.41992 5.51249 5.67364 5.73310 5.77715 5.90271 5.90520 5.91418 6.39438 6.62037 6.70934 7.12966 7.17245 7.58671 8.00983 8.36278 8.85475 9.43500 10.96692 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.057791 B = 0.004851 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.384521 B = 5770.093888 C = 6117.339313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.071 3.929 3 H 0.072 0.928 4 C -0.142 4.142 5 C -0.120 4.120 6 H 0.121 0.879 7 C 0.466 3.534 8 O -0.510 6.510 9 O -0.358 6.358 10 C 0.081 3.919 11 C -0.009 4.009 12 C -0.529 4.529 13 H 0.075 0.925 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.882 3.118 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.263 1.263 20 C 0.064 3.936 21 O -0.370 6.370 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.024 0.976 31 H 0.266 0.734 32 H 0.109 0.891 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.338 7.924 6.295 20.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.013 3.987 3 H 0.090 0.910 4 C -0.180 4.180 5 C -0.140 4.140 6 H 0.139 0.861 7 C 0.308 3.692 8 O -0.399 6.399 9 O -0.274 6.274 10 C 0.009 3.991 11 C -0.047 4.047 12 C -0.567 4.567 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.708 3.292 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.188 1.188 20 C -0.013 4.013 21 O -0.289 6.289 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.115 0.885 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.128 0.872 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.154 8.008 6.174 20.780 hybrid contribution 0.278 -0.639 0.261 0.744 sum -17.876 7.369 6.435 20.378 Atomic orbital electron populations 1.21938 0.93474 1.02945 1.02438 1.22782 0.95317 0.96026 0.84565 0.91037 1.23059 0.99835 0.96753 0.98347 1.22581 0.92743 1.02302 0.96347 0.86065 1.23062 0.84883 0.77515 0.83732 1.90638 1.77785 1.44944 1.26499 1.86490 1.30807 1.54709 1.55411 1.23429 0.80833 1.01417 0.93422 1.19628 0.93970 0.93310 0.97757 1.20835 1.01096 1.22542 1.12217 0.90660 1.24939 0.94749 0.96625 0.96670 1.69891 1.08627 1.36175 1.38752 0.86746 0.77667 0.81133 0.83631 1.20033 1.21127 1.18750 1.23471 0.87906 0.97104 0.92846 1.88908 1.39394 1.67608 1.33036 0.91756 0.91853 0.91136 0.88527 0.89472 0.91630 0.91604 0.95329 0.95778 0.92387 0.87247 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.37 37.16 0.35 -0.80 16 2 C 0.07 0.68 4.05 -26.16 -0.11 0.58 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.14 -1.48 6.04 -25.21 -0.15 -1.63 16 5 C -0.12 -1.43 3.63 -89.77 -0.33 -1.75 16 6 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 7 C 0.47 7.54 7.27 36.01 0.26 7.81 16 8 O -0.51 -9.54 15.22 -18.75 -0.29 -9.82 16 9 O -0.36 -6.57 10.22 -39.27 -0.40 -6.97 16 10 C 0.08 1.71 5.40 37.16 0.20 1.92 16 11 C -0.01 -0.22 4.42 -27.88 -0.12 -0.34 16 12 C -0.53 -14.94 9.66 -34.44 -0.33 -15.28 16 13 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 14 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 16 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 20 C 0.06 0.72 7.17 38.21 0.27 0.99 16 21 O -0.37 -4.32 11.19 -35.23 -0.39 -4.72 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.10 1.13 6.90 -51.93 -0.36 0.77 16 26 H 0.09 0.77 7.70 -51.93 -0.40 0.37 16 27 H 0.07 1.39 8.13 -51.93 -0.42 0.97 16 28 H 0.07 1.39 8.13 -51.93 -0.42 0.97 16 29 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 30 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 31 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.79 8.04 -51.93 -0.42 0.37 16 LS Contribution 280.13 15.07 4.22 4.22 Total: -1.00 -31.35 280.13 -5.72 -37.07 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -4.91 Total: -3.38 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -0.05 Total: -6.52 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.77 Total: -26.45 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -1.08 Total: -21.51 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.35 -5.72 -37.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784269377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.259 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds